Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR044010 Cardamine hirsuta HOM05D006671 ORTHO05D008637 6.3e-307 1056.6 525 100.0
Thhalv10011378m.g Eutrema salsugineum HOM05D006671 ORTHO05D008637 2.0e-273 945.3 535 86.9
Carub.0001s4299 Capsella rubella HOM05D006671 ORTHO05D008637 2.5e-271 938.3 531 86.4
Sp1g40250 Schrenkiella parvula HOM05D006671 ORTHO05D008637 3.2e-271 937.9 529 86.2
AL1G62410 Arabidopsis lyrata HOM05D006671 ORTHO05D008637 2.8e-267 924.9 530 86.0
AT1G53710 Arabidopsis thaliana HOM05D006671 ORTHO05D008637 1.7e-264 915.6 527 85.6
BolC3t21495H Brassica oleracea HOM05D006671 ORTHO05D008637 1.2e-257 892.9 528 82.8
BcaB04g17063 Brassica carinata HOM05D006671 ORTHO05D008637 2.7e-257 891.7 524 83.2
BraA08t32194Z Brassica rapa HOM05D006671 ORTHO05D008637 8.6e-256 886.7 529 82.4
A08p01430 Brassica napus HOM05D006671 ORTHO05D008637 9.5e-255 883.2 529 82.2
BcaC01g01410 Brassica carinata HOM05D006671 ORTHO05D008637 3.6e-254 881.3 525 81.7
C03p91740 Brassica napus HOM05D006671 ORTHO05D008637 1.4e-253 879.4 525 81.5
Aa31LG10G1550 Aethionema arabicum HOM05D006671 ORTHO05D008637 6.8e-245 850.5 530 78.1
Thecc.06G048900 Theobroma cacao HOM05D006671 ORTHO05D008637 9.7e-183 644.0 540 58.3
Manes.11G010600 Manihot esculenta HOM05D006671 ORTHO05D008637 5.3e-181 638.3 540 58.9
Potri.001G161100 Populus trichocarpa HOM05D006671 ORTHO05D008637 6.9e-181 637.9 533 57.8
Gohir.D13G119900 Gossypium hirsutum HOM05D006671 ORTHO05D008637 1.2e-180 637.1 539 59.2
COL.COLO4_26801 Corchorus olitorius HOM05D006671 ORTHO05D008637 2.6e-180 636.0 537 57.9
Gorai.013G134300 Gossypium raimondii HOM05D006671 ORTHO05D008637 3.8e-179 632.1 543 58.9
Atru.chr1.4182 Acer truncatum HOM05D006671 ORTHO05D008637 2.5e-178 629.4 533 58.5
CiPaw.03G010100 Carya illinoinensis HOM05D006671 ORTHO05D008637 1.6e-177 626.7 543 57.5
Duzib160G0342 Durio zibethinus HOM05D006671 ORTHO05D008637 1.4e-176 623.6 540 57.0
Glyma.16G015100 Glycine max HOM05D006671 ORTHO05D008637 8.8e-176 620.9 547 56.5
TPR.G26443 Trifolium pratense HOM05D006671 ORTHO05D008637 3.3e-175 619.0 537 58.1
Lalb_Chr10g0101031 Lupinus albus HOM05D006671 ORTHO05D008637 4.4e-175 618.6 541 57.5
Ciclev10025368m.g Citrus clementina HOM05D006671 ORTHO05D008637 3.7e-174 615.5 525 56.8
Phvul.010G121800 Phaseolus vulgaris HOM05D006671 ORTHO05D008637 3.7e-174 615.5 544 57.9
Prupe.3G029600 Prunus persica HOM05D006671 ORTHO05D008637 6.3e-174 614.8 529 57.5
CSS0038482 Camellia sinensis var. sinensis HOM05D006671 ORTHO05D008637 4.1e-173 612.1 530 56.2
Glyma.07G047100 Glycine max HOM05D006671 ORTHO05D008637 7.0e-173 611.3 539 55.5
MD09G1171100 Malus domestica HOM05D006671 ORTHO05D008637 7.0e-173 611.3 532 57.7
RcHm_v2.0_Chr2g0148251 Rosa chinensis HOM05D006671 ORTHO05D008637 3.5e-172 609.0 519 59.5
Psat4g165440 Pisum sativum HOM05D006671 ORTHO05D008637 1.7e-171 606.7 537 57.4
Lj3g0013980 Lotus japonicus HOM05D006671 ORTHO05D008637 2.9e-171 605.9 551 55.5
Cpa.g.sc229.10 Carica papaya HOM05D006671 ORTHO05D008637 3.8e-171 605.5 539 55.8
Rhsim08G0246200 Rhododendron simsii HOM05D006671 ORTHO05D008637 5.5e-170 601.7 546 54.6
Medtr8g023620 Medicago truncatula HOM05D006671 ORTHO05D008637 1.6e-169 600.1 542 56.8
vmacro18708 Vaccinium macrocarpon HOM05D006671 ORTHO05D008637 1.6e-169 600.1 535 55.9
FvH4_6g36250 Fragaria vesca HOM05D006671 ORTHO05D008637 2.3e-168 596.3 517 58.8
TAR623G0926 Trochodendron aralioides HOM05D006671 ORTHO05D008637 2.3e-168 596.3 534 54.9
FAN14G1234 Fragaria x ananassa HOM05D006671 ORTHO05D008637 1.1e-167 594.0 517 58.6
CANSAT56G3116 Cannabis sativa HOM05D006671 ORTHO05D008637 2.4e-165 586.3 538 56.1
TWI59G0357 Tripterygium wilfordii HOM05D006671 ORTHO05D008637 2.4e-165 586.3 536 56.0
Eucgr.I02172 Eucalyptus grandis HOM05D006671 ORTHO05D008637 7.0e-165 584.7 534 53.6
Sc12g0010960 Simmondsia chinensis HOM05D006671 ORTHO05D008637 3.2e-162 575.9 534 53.7
EL10Ac7g18235 Beta vulgaris HOM05D006671 ORTHO05D008637 7.2e-162 574.7 526 54.2
PSO017G0187 Papaver somniferum HOM05D006671 ORTHO05D008637 1.4e-160 570.5 535 54.0
FAN09G2187 Fragaria x ananassa HOM05D006671 ORTHO05D008637 2.3e-160 569.7 517 56.9
Aqoxy2G04033 Aquilegia oxysepala HOM05D006671 ORTHO05D008637 3.0e-160 569.3 535 52.3
PGR119G0898 Punica granatum HOM05D006671 ORTHO05D008637 3.0e-160 569.3 542 53.5
Sabra01G0131200 Salix brachista HOM05D006671 ORTHO05D008637 6.8e-160 568.2 571 51.3
PGSC0003DMG402028844 Solanum tuberosum HOM05D006671 ORTHO05D008637 1.2e-159 567.4 531 53.5
Sopen12g024210 Solanum pennellii HOM05D006671 ORTHO05D008637 1.5e-159 567.0 531 52.9
Cc04_g00530 Coffea canephora HOM05D006671 ORTHO05D008637 7.5e-159 564.7 537 52.1
arahy.Tifrunner.gnm1.ann1.NMV212 Arachis hypogaea HOM05D006671 ORTHO05D008637 2.2e-158 563.1 541 52.5
Solyc12g055740.2 Solanum lycopersicum HOM05D006671 ORTHO05D008637 2.2e-158 563.1 531 52.7
arahy.Tifrunner.gnm1.ann1.YS0GDU Arachis hypogaea HOM05D006671 ORTHO05D008637 6.3e-158 561.6 541 52.7
CAN.G390.42 Capsicum annuum HOM05D006671 ORTHO05D008637 1.2e-156 557.4 533 51.4
Nn8g41287 Nelumbo nucifera HOM05D006671 ORTHO05D008637 1.2e-156 557.4 533 50.8
Haze_14039 Corylus avellana HOM05D006671 ORTHO05D008637 2.7e-156 556.2 637 47.7
DCAR_007665 Daucus carota HOM05D006671 ORTHO05D008637 1.0e-155 554.3 552 50.4
Actinidia24409 Actinidia chinensis HOM05D006671 ORTHO05D008637 1.3e-155 553.9 494 55.1
ECA234G0268 Erigeron canadensis HOM05D006671 ORTHO05D008637 1.3e-155 553.9 523 50.9
SalBow7G2314 Salvia bowleyana HOM05D006671 ORTHO05D008637 1.3e-155 553.9 533 52.7
Migut.D00903 Erythranthe guttata HOM05D006671 ORTHO05D008637 8.5e-155 551.2 531 51.4
HanXRQChr10g0311581 Helianthus annuus HOM05D006671 ORTHO05D008637 1.1e-154 550.8 527 52.2
PGSC0003DMG401028844 Solanum tuberosum HOM05D006671 ORTHO05D008637 1.6e-153 547.0 533 52.0
MSTRG.9549 Avicennia marina HOM05D006671 ORTHO05D008637 6.1e-153 545.0 527 51.6
FAN14G2634 Fragaria x ananassa HOM05D006671 ORTHO05D008637 5.2e-152 542.0 517 55.9
Lj5C27T5 Lonicera japonica HOM05D006671 ORTHO05D008637 5.2e-152 542.0 488 55.5
Zm00001eb392730 Zea mays HOM05D006671 ORTHO05D008637 1.2e-148 530.8 529 50.7
Os03g0397300 Oryza sativa ssp. japonica HOM05D006671 ORTHO05D008637 1.0e-147 527.7 536 49.6
MBI13_g05970_MAGBIO Magnolia biondii HOM05D006671 ORTHO05D008637 3.8e-147 525.8 506 53.2
SGA_v2.0_scaffold4G02101 Striga asiatica HOM05D006671 ORTHO05D008637 3.6e-145 519.2 532 50.6
HPP92_002242 Vanilla planifolia HOM05D006671 ORTHO05D008637 6.1e-145 518.5 536 49.4
THA.LOC104822767 Tarenaya hassleriana HOM05D006671 ORTHO05D008637 2.3e-144 516.5 369 71.0
AUR62001377 Chenopodium quinoa HOM05D006671 ORTHO05D008637 8.9e-144 514.6 481 52.8
Ah.08g217540 Amaranthus hybridus HOM05D006671 ORTHO05D008637 4.4e-143 512.3 526 50.6
GSVIVG01026409001 Vitis vinifera HOM05D006671 ORTHO05D008637 2.2e-142 510.0 756 38.9
PSO170G0973 Papaver somniferum HOM05D006671 ORTHO05D008637 6.4e-142 508.4 474 54.0
AUR62044064 Chenopodium quinoa HOM05D006671 ORTHO05D008637 1.8e-141 506.9 468 53.0
Lsat_1_v5_gn_5_137600 Lactuca sativa HOM05D006671 ORTHO05D008637 9.5e-138 494.6 511 48.3
CDE06G0010 Ceratophyllum demersum HOM05D006671 ORTHO05D008637 1.5e-135 487.3 515 49.5
BcaNung02916 Brassica carinata HOM05D006671 ORTHO05D008637 1.9e-133 480.3 497 55.7
Actinidia33812 Actinidia chinensis HOM05D006671 ORTHO05D008637 4.3e-130 469.2 535 48.2
Nitab4.5_0000357g0220 Nicotiana tabacum HOM05D006671 ORTHO05D008637 1.1e-128 464.5 533 46.0
Nitab4.5_0003469g0010 Nicotiana tabacum HOM05D006671 ORTHO05D008637 2.0e-127 460.3 537 46.0
unitig_699.g19656 Utricularia gibba HOM05D006671 ORTHO05D001254 7.5e-127 458.4 525 45.5
Dinv20369 Davidia involucrata HOM05D006671 ORTHO05D008637 2.1e-124 450.3 364 57.7
SEGI_35568 Sequoiadendron giganteum HOM05D006671 ORTHO05D008637 2.6e-119 433.3 434 49.3
Pp3c21_8010 Physcomitrium patens HOM05D006671 ORTHO05D008637 1.5e-111 407.5 532 41.2
SMO347G0345 Selaginella moellendorffii HOM05D006671 ORTHO05D008637 9.9e-111 404.8 525 42.1
Peaxi162Scf00177g00616 Petunia axillaris HOM05D006671 ORTHO05D008637 9.3e-109 398.3 527 42.1
AagrBONN_evm.TU.Sc2ySwM_362.1979 Anthoceros agrestis HOM05D006671 ORTHO05D008637 2.3e-107 393.7 535 41.9
Ca_23471_v3 Cicer arietinum L. HOM05D006671 ORTHO05D008637 1.3e-102 377.9 468 45.9
VMungo0331G0057 Vigna mungo HOM05D006671 ORTHO05D008637 5.4e-101 372.5 299 59.2
QL03p047059 Quercus lobata HOM05D006671 ORTHO05D008637 4.3e-90 336.3 263 59.3
Hma1.2p1_1104F.1_g257490 Hydrangea macrophylla HOM05D006671 ORTHO05D008637 8.4e-86 322.0 256 58.2
THA.LOC104803433 Tarenaya hassleriana HOM05D006671 ORTHO05D008637 4.3e-82 309.7 185 76.2
Mapoly0048s0109 Marchantia polymorpha HOM05D006671 ORTHO05D008637 1.5e-79 301.2 528 33.7
QL03p047068 Quercus lobata HOM05D006671 ORTHO05D008637 6.5e-78 295.8 276 55.8
Hma1.2p1_1104F.1_g257500 Hydrangea macrophylla HOM05D006671 ORTHO05D008637 2.7e-76 290.4 268 56.0
FAN02G1271 Fragaria x ananassa HOM05D006671 ORTHO05D008637 1.0e-75 288.5 316 50.6
Gohir.A13G116750 Gossypium hirsutum HOM05D006671 ORTHO05D008637 7.7e-71 272.3 206 60.2
Oeu006761.2 Olea europaea HOM05D006671 ORTHO05D008637 1.4e-69 268.1 282 48.6
Gohir.A13G116801 Gossypium hirsutum HOM05D006671 ORTHO05D008637 2.2e-65 254.2 248 56.0
MD17G1156100 Malus domestica HOM05D006671 ORTHO05D008637 8.5e-62 242.3 439 36.4
ATR0006G018 Amborella trichopoda HOM05D006671 ORTHO05D008637 2.3e-59 234.2 262 47.3
SEGI_04788 Sequoiadendron giganteum HOM05D006671 ORTHO05D008637 1.1e-53 215.3 278 43.2
Actinidia21851 Actinidia chinensis HOM05D006671 ORTHO05D008637 1.0e-46 192.2 201 51.2
MCO09G741 Micromonas commoda HOM05D006671 ORTHO05D008637 6.3e-41 172.9 425 31.1
C01p50010 Brassica napus HOM05D010519 ORTHO05D027459 2.6e-34 151.0 139 61.2
BolC1t04958H Brassica oleracea HOM05D010519 ORTHO05D027459 2.6e-34 151.0 139 61.2
HPP92_002174 Vanilla planifolia HOM05D000872 ORTHO05D007886 1.1e-32 145.6 302 31.1
Hund05690 Selenicereus undatus HOM05D006671 ORTHO05D008637 4.1e-32 143.7 125 57.6
BcaC09g48416 Brassica carinata HOM05D006671 ORTHO05D027459 1.0e-30 139.0 101 72.3
Actinidia21852 Actinidia chinensis HOM05D006671 ORTHO05D008637 6.1e-28 129.8 120 51.7
Cfa022026 Carpinus fangiana HOM05D002393 ORTHO05D123579 1.1e-24 119.0 485 26.4
FAN05G4676 Fragaria x ananassa HOM05D006671 ORTHO05D008637 1.1e-21 109.0 108 56.5
Lsat_1_v5_gn_2_122021 Lactuca sativa HOM05D006671 ORTHO05D008637 1.2e-15 89.0 141 36.2
Lsat_1_v5_gn_2_91241 Lactuca sativa HOM05D006671 ORTHO05D011576 9.9e-10 69.3 69 49.3
BcaB07g33306 Brassica carinata HOM05D000305 ORTHO05D000065 6.4e-09 66.6 33 84.8
Lsat_1_v5_gn_1_119700 Lactuca sativa HOM05D006671 ORTHO05D011576 8.3e-09 66.2 69 47.8
AUR62027724 Chenopodium quinoa HOM05D008167 ORTHO05D010296 1.1e-08 65.9 332 21.7
EL10Ac1g01257 Beta vulgaris HOM05D008167 ORTHO05D010296 1.2e-07 62.4 355 21.7
TAR628G0982 Trochodendron aralioides HOM05D008167 ORTHO05D010296 2.1e-07 61.6 376 19.9
CSS0027715 Camellia sinensis var. sinensis HOM05D006671 ORTHO05D008637 6.0e-07 60.1 38 65.8
HanXRQChr04g0111501 Helianthus annuus HOM05D008167 ORTHO05D010296 2.3e-06 58.2 385 21.8


User provided reference genes

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