Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR043670 Cardamine hirsuta HOM05D004150 ORTHO05D005087 4.6e-266 920.6 454 100.0
Sp1g39990 Schrenkiella parvula HOM05D004150 ORTHO05D005087 2.1e-234 815.5 462 88.1
Thhalv10011465m.g Eutrema salsugineum HOM05D004150 ORTHO05D005087 2.7e-229 798.5 461 85.9
AT1G53450 Arabidopsis thaliana HOM05D004150 ORTHO05D005087 1.3e-228 796.2 461 87.0
Carub.0001s4264 Capsella rubella HOM05D004150 ORTHO05D005087 9.5e-227 790.0 461 85.9
BcaB07g33329 Brassica carinata HOM05D004150 ORTHO05D005087 1.3e-212 743.0 459 80.0
Aa31LG8G2040 Aethionema arabicum HOM05D004150 ORTHO05D005087 9.5e-211 736.9 476 76.5
BcaC08g43529 Brassica carinata HOM05D004150 ORTHO05D005087 1.4e-209 733.0 465 79.8
BolC6t35999H Brassica oleracea HOM05D004150 ORTHO05D005087 1.4e-209 733.0 465 79.8
THA.LOC104815577 Tarenaya hassleriana HOM05D004150 ORTHO05D005087 2.3e-209 732.3 474 75.7
BraA06t23329Z Brassica rapa HOM05D004150 ORTHO05D005087 5.2e-209 731.1 465 79.8
A06p01010 Brassica napus HOM05D004150 ORTHO05D005087 8.9e-209 730.3 465 79.6
AL3G27140 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 2.0e-208 729.2 477 76.9
C06p09220 Brassica napus HOM05D004150 ORTHO05D005087 3.7e-207 724.9 465 79.6
AT3G14830 Arabidopsis thaliana HOM05D004150 ORTHO05D005087 4.1e-206 721.5 478 75.5
THA.LOC104810428 Tarenaya hassleriana HOM05D004150 ORTHO05D005087 7.8e-205 717.2 474 74.3
CARHR089770 Cardamine hirsuta HOM05D004150 ORTHO05D005087 4.3e-203 711.4 477 76.1
BolC5t33929H Brassica oleracea HOM05D004150 ORTHO05D005087 1.3e-199 699.9 472 74.8
BcaC05g29034 Brassica carinata HOM05D004150 ORTHO05D005087 1.9e-198 696.0 472 74.6
C05p52450 Brassica napus HOM05D004150 ORTHO05D005087 1.9e-198 696.0 472 74.6
Carub.0003s1449 Capsella rubella HOM05D004150 ORTHO05D005087 4.1e-198 694.9 480 74.0
BraA05t22282Z Brassica rapa HOM05D004150 ORTHO05D005087 1.6e-197 693.0 463 74.9
A05p34660 Brassica napus HOM05D004150 ORTHO05D005087 1.0e-196 690.3 464 75.0
BcaB06g25355 Brassica carinata HOM05D004150 ORTHO05D005087 7.6e-192 674.1 472 72.2
Gohir.A13G149900 Gossypium hirsutum HOM05D004150 ORTHO05D005087 8.1e-178 627.5 473 67.2
Cfa019528 Carpinus fangiana HOM05D004150 ORTHO05D005087 1.8e-177 626.3 475 66.7
COL.COLO4_17523 Corchorus olitorius HOM05D004150 ORTHO05D005087 9.0e-177 624.0 480 65.8
Thecc.07G119700 Theobroma cacao HOM05D004150 ORTHO05D005087 2.6e-176 622.5 477 65.2
MD03G1246300 Malus domestica HOM05D004150 ORTHO05D005087 1.7e-175 619.8 477 65.2
Atru.chr2.2029 Acer truncatum HOM05D004150 ORTHO05D005087 2.9e-175 619.0 473 66.4
Atru.chr2.2041 Acer truncatum HOM05D004150 ORTHO05D005087 2.9e-175 619.0 473 66.4
FvH4_3g17970 Fragaria vesca HOM05D004150 ORTHO05D005087 4.9e-175 618.2 474 66.7
RcHm_v2.0_Chr5g0030011 Rosa chinensis HOM05D004150 ORTHO05D005087 8.4e-175 617.5 473 66.8
FAN21G0088 Fragaria x ananassa HOM05D004150 ORTHO05D005087 4.2e-174 615.1 473 66.2
Manes.03G091700 Manihot esculenta HOM05D004150 ORTHO05D005087 4.2e-174 615.1 475 65.7
Potri.003G026500 Populus trichocarpa HOM05D004150 ORTHO05D005087 4.2e-174 615.1 475 65.3
Potri.011G106600 Populus trichocarpa HOM05D004150 ORTHO05D005087 1.2e-173 613.6 477 65.4
Gohir.A01G052900 Gossypium hirsutum HOM05D004150 ORTHO05D005087 1.6e-173 613.2 474 65.8
Gorai.002G053300 Gossypium raimondii HOM05D004150 ORTHO05D005087 2.7e-173 612.5 475 66.3
Cc05_g10890 Coffea canephora HOM05D004150 ORTHO05D005087 4.6e-173 611.7 474 64.1
CANSAT56G2087 Cannabis sativa HOM05D004150 ORTHO05D005087 6.0e-173 611.3 478 64.6
Hma1.2p1_2701F.1_g327060 Hydrangea macrophylla HOM05D004150 ORTHO05D005087 1.0e-172 610.5 473 63.8
PGR083G0816 Punica granatum HOM05D004150 ORTHO05D005087 1.3e-172 610.1 479 64.5
VMungo1080G1533 Vigna mungo HOM05D004150 ORTHO05D005087 1.8e-172 609.8 479 64.5
Glyma.13G266400 Glycine max HOM05D004150 ORTHO05D005087 3.0e-172 609.0 475 64.8
Gohir.D01G042500 Gossypium hirsutum HOM05D004150 ORTHO05D005087 3.0e-172 609.0 475 66.1
CSS0042666 Camellia sinensis var. sinensis HOM05D004150 ORTHO05D005087 3.9e-172 608.6 475 64.0
Phvul.005G079200 Phaseolus vulgaris HOM05D004150 ORTHO05D005087 5.1e-172 608.2 479 64.3
GSVIVG01014152001 Vitis vinifera HOM05D004150 ORTHO05D005087 8.7e-172 607.4 473 64.3
TWI38G0344 Tripterygium wilfordii HOM05D004150 ORTHO05D005087 1.1e-171 607.1 478 64.2
Psat5g234480 Pisum sativum HOM05D004150 ORTHO05D005087 1.5e-171 606.7 474 63.7
Glyma.12G231700 Glycine max HOM05D004150 ORTHO05D005087 5.6e-171 604.7 479 64.1
MD11G1267300 Malus domestica HOM05D004150 ORTHO05D005087 5.6e-171 604.7 477 64.6
CiPaw.11G157600 Carya illinoinensis HOM05D004150 ORTHO05D005087 7.4e-171 604.4 476 63.9
CsaV3_4G032910 Cucumis sativus L. HOM05D004150 ORTHO05D005087 6.2e-170 601.3 469 64.8
Lsat_1_v5_gn_9_100501 Lactuca sativa HOM05D004150 ORTHO05D005087 6.2e-170 601.3 479 62.2
MBI06_g16571_MAGBIO Magnolia biondii HOM05D004150 ORTHO05D005087 1.1e-169 600.5 474 63.7
TWI39G0561 Tripterygium wilfordii HOM05D004150 ORTHO05D005087 3.1e-169 599.0 479 63.3
Manes.15G097400 Manihot esculenta HOM05D004150 ORTHO05D005087 3.4e-168 595.5 474 63.9
CSS0001873 Camellia sinensis var. sinensis HOM05D004150 ORTHO05D005087 5.8e-168 594.7 476 61.8
Ciclev10019972m.g Citrus clementina HOM05D004150 ORTHO05D005087 5.8e-168 594.7 478 63.8
Medtr2g075340 Medicago truncatula HOM05D004150 ORTHO05D005087 6.4e-167 591.3 468 62.0
Ca_03941_v3 Cicer arietinum L. HOM05D004150 ORTHO05D005087 1.4e-166 590.1 475 62.3
FAN25G1025 Fragaria x ananassa HOM05D004150 ORTHO05D005087 2.4e-166 589.3 512 60.5
FAN11G2611 Fragaria x ananassa HOM05D004150 ORTHO05D005087 3.2e-166 589.0 493 62.9
FAN16G0401 Fragaria x ananassa HOM05D004150 ORTHO05D005087 7.1e-166 587.8 510 61.0
Eucgr.F01300 Eucalyptus grandis HOM05D004150 ORTHO05D005087 9.3e-166 587.4 481 62.0
CAN.G375.32 Capsicum annuum HOM05D004150 ORTHO05D005087 6.0e-165 584.7 518 57.1
HanXRQChr17g0556791 Helianthus annuus HOM05D004150 ORTHO05D005087 1.8e-164 583.2 467 61.9
Sc03g0010640 Simmondsia chinensis HOM05D004150 ORTHO05D005087 3.9e-164 582.0 478 61.5
Aqoxy1G01964 Aquilegia oxysepala HOM05D004150 ORTHO05D005087 1.9e-163 579.7 472 60.2
Solyc07g062250.3 Solanum lycopersicum HOM05D004150 ORTHO05D005087 5.6e-163 578.2 517 57.1
Sopen07g030520 Solanum pennellii HOM05D004150 ORTHO05D005087 5.6e-163 578.2 516 57.2
PGSC0003DMG400007094 Solanum tuberosum HOM05D004150 ORTHO05D005087 2.1e-162 576.2 517 57.1
AL1G61960 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 3.7e-162 575.5 332 86.4
HanXRQChr10g0305531 Helianthus annuus HOM05D004150 ORTHO05D005087 4.8e-162 575.1 482 60.0
MELO3C025660.2 Cucumis melo HOM05D004150 ORTHO05D005087 8.2e-162 574.3 486 61.5
Oeu058459.1 Olea europaea HOM05D004150 ORTHO05D005087 1.4e-161 573.5 475 60.0
Lj3g0004524 Lotus japonicus HOM05D004150 ORTHO05D005087 1.8e-161 573.2 485 62.5
PSO170G1443 Papaver somniferum HOM05D004150 ORTHO05D005087 6.9e-161 571.2 481 58.8
Lalb_Chr19g0133751 Lupinus albus HOM05D004150 ORTHO05D005087 1.2e-160 570.5 479 60.5
EL10Ac4g08396 Beta vulgaris HOM05D004150 ORTHO05D005087 2.0e-160 569.7 476 59.2
Gohir.D13G154200 Gossypium hirsutum HOM05D004150 ORTHO05D005087 2.0e-160 569.7 430 66.7
Sabra16G0254300 Salix brachista HOM05D004150 ORTHO05D005087 2.0e-160 569.7 524 58.4
Nn6g34456 Nelumbo nucifera HOM05D004150 ORTHO05D005087 5.8e-160 568.2 473 60.3
ClCG11G017260 Citrullus lanatus HOM05D004150 ORTHO05D005087 1.7e-159 566.6 542 56.3
Oeu010027.3 Olea europaea HOM05D004150 ORTHO05D005087 1.7e-159 566.6 499 57.3
PSO782G0021 Papaver somniferum HOM05D004150 ORTHO05D005087 1.7e-159 566.6 481 58.6
Lalb_Chr25g0285681 Lupinus albus HOM05D004150 ORTHO05D005087 2.9e-159 565.8 474 62.4
Lj1A826G61 Lonicera japonica HOM05D004150 ORTHO05D005087 4.9e-159 565.1 484 60.1
Rhsim04G0036400 Rhododendron simsii HOM05D004150 ORTHO05D005087 5.5e-158 561.6 478 60.3
Rhsim04G0035400 Rhododendron simsii HOM05D004150 ORTHO05D005087 1.2e-157 560.5 478 60.3
MSTRG.14976 Avicennia marina HOM05D004150 ORTHO05D005087 2.7e-157 559.3 476 61.6
Nitab4.5_0000347g0180 Nicotiana tabacum HOM05D004150 ORTHO05D005087 1.8e-156 556.6 518 55.6
SGA_v2.0_scaffold130G34274 Striga asiatica HOM05D004150 ORTHO05D005087 6.7e-156 554.7 499 58.7
vmacro09408 Vaccinium macrocarpon HOM05D004150 ORTHO05D005087 1.1e-155 553.9 482 60.0
Actinidia12595 Actinidia chinensis HOM05D004150 ORTHO05D005087 2.5e-155 552.7 525 54.3
Peaxi162Scf00111g01477 Petunia axillaris HOM05D004150 ORTHO05D005087 5.7e-155 551.6 518 55.2
ECA234G0958 Erigeron canadensis HOM05D004150 ORTHO05D005087 4.8e-154 548.5 481 58.6
TAR629G2423 Trochodendron aralioides HOM05D004150 ORTHO05D005087 6.3e-154 548.1 431 63.1
Gorai.013G174200 Gossypium raimondii HOM05D004150 ORTHO05D005087 4.1e-153 545.4 482 59.5
Lalb_Chr03g0031251 Lupinus albus HOM05D004150 ORTHO05D005087 2.6e-152 542.7 478 57.3
Sed0003063 Sechium edule HOM05D004150 ORTHO05D005087 5.9e-152 541.6 437 63.4
Actinidia21439 Actinidia chinensis HOM05D004150 ORTHO05D005087 1.0e-151 540.8 475 59.2
TPR.G13030 Trifolium pratense HOM05D004150 ORTHO05D005087 1.3e-151 540.4 477 58.3
ATR0127G006 Amborella trichopoda HOM05D004150 ORTHO05D005087 2.8e-146 522.7 480 57.5
Migut.H02018 Erythranthe guttata HOM05D004150 ORTHO05D005087 4.8e-146 521.9 435 60.5
Ah.04g164080 Amaranthus hybridus HOM05D004150 ORTHO05D005087 4.5e-144 515.4 477 56.6
SalBow7G0391 Salvia bowleyana HOM05D004150 ORTHO05D005087 5.0e-143 511.9 474 56.8
Os01g0729900 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 7.9e-141 504.6 490 52.4
AUR62019617 Chenopodium quinoa HOM05D004150 ORTHO05D005087 3.9e-140 502.3 478 54.6
AUR62039606 Chenopodium quinoa HOM05D004150 ORTHO05D005087 1.5e-139 500.4 478 54.6
Dinv15009 Davidia involucrata HOM05D004150 ORTHO05D005087 2.0e-139 500.0 385 64.9
Prupe.4G158300 Prunus persica HOM05D004150 ORTHO05D005087 2.6e-139 499.6 397 65.2
Potri.001G386700 Populus trichocarpa HOM05D004150 ORTHO05D005087 2.9e-135 486.1 387 64.3
ECA240G3777 Erigeron canadensis HOM05D004150 ORTHO05D005087 1.4e-134 483.8 395 61.0
Zm00001eb154220 Zea mays HOM05D004150 ORTHO05D005087 4.7e-133 478.8 493 49.5
TAR627G0919 Trochodendron aralioides HOM05D004150 ORTHO05D005087 2.6e-131 473.0 389 62.5
Cpa.g.sc77.46 Carica papaya HOM05D004150 ORTHO05D005087 7.4e-131 471.5 284 77.1
Duzib213G1096 Durio zibethinus HOM05D004150 ORTHO05D005087 8.2e-130 468.0 433 58.2
Dinv18386 Davidia involucrata HOM05D004150 ORTHO05D005087 3.1e-129 466.1 375 62.4
QL08p025853 Quercus lobata HOM05D004150 ORTHO05D005087 4.1e-129 465.7 291 74.9
Os05g0530300 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 2.7e-125 453.0 508 47.2
HPP92_005189 Vanilla planifolia HOM05D004150 ORTHO05D005087 4.7e-125 452.2 392 56.9
Sabra11G0094900 Salix brachista HOM05D004150 ORTHO05D005087 1.8e-124 450.3 434 56.9
Zm00001eb361900 Zea mays HOM05D004150 ORTHO05D005087 3.0e-124 449.5 457 50.8
Hund10457 Selenicereus undatus HOM05D004150 ORTHO05D005087 6.7e-124 448.4 435 55.2
Nitab4.5_0024430g0010 Nicotiana tabacum HOM05D004150 ORTHO05D005087 7.2e-118 428.3 288 67.7
CDE06G0863 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 1.6e-117 427.2 457 51.4
CiPaw.12G111300 Carya illinoinensis HOM05D004150 ORTHO05D005087 1.4e-116 424.1 347 63.7
unitig_21.g20061 Utricularia gibba HOM05D004150 ORTHO05D005087 1.7e-114 417.2 474 48.1
Nn3g21055 Nelumbo nucifera HOM05D004150 ORTHO05D005087 1.1e-113 414.5 394 57.1
DCAR_013267 Daucus carota HOM05D004150 ORTHO05D005087 1.4e-105 387.5 330 56.4
Os06g0152800 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 1.5e-102 377.5 389 50.1
SMO169G0186 Selaginella moellendorffii HOM05D004150 ORTHO05D005087 2.6e-99 366.7 288 59.4
Zm00001eb271010 Zea mays HOM05D004150 ORTHO05D005087 1.0e-95 354.8 302 55.6
AagrBONN_evm.TU.Sc2ySwM_362.2802 Anthoceros agrestis HOM05D004150 ORTHO05D005087 3.9e-95 352.8 529 40.1
Mapoly0001s0101 Marchantia polymorpha HOM05D004150 ORTHO05D005087 5.8e-91 339.0 304 55.6
SEGI_28417 Sequoiadendron giganteum HOM05D004150 ORTHO05D005087 1.9e-86 323.9 382 43.7
Pp3c9_8060 Physcomitrium patens HOM05D004150 ORTHO05D005087 1.7e-79 300.8 310 50.3
CDE02G2021 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 3.9e-79 299.7 294 55.4
Zm00001eb293260 Zea mays HOM05D004150 ORTHO05D005087 5.6e-78 295.8 372 47.0
Hma1.2p1_1650F.1_g295710 Hydrangea macrophylla HOM05D004150 ORTHO05D005087 3.0e-63 246.9 295 50.2
AL1G62010 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 2.5e-62 243.8 130 88.5
Haze_09270 Corylus avellana HOM05D004150 ORTHO05D005087 2.1e-56 224.2 206 54.9
Mapoly0030s0045 Marchantia polymorpha HOM05D004150 ORTHO05D005087 1.1e-52 211.8 202 54.0
Gorai.010G164000 Gossypium raimondii HOM05D004150 ORTHO05D005087 9.9e-51 205.3 180 61.7
Haze_09266 Corylus avellana HOM05D004150 ORTHO05D005087 5.5e-41 172.9 185 55.7
Gohir.D04G018433 Gossypium hirsutum HOM05D004150 ORTHO05D005087 2.1e-40 171.0 95 84.2
Gorai.001G168800 Gossypium raimondii HOM05D004150 ORTHO05D005087 7.9e-40 169.1 92 85.9
Gohir.A11G228702 Gossypium hirsutum HOM05D004150 ORTHO05D005087 2.5e-38 164.1 92 82.6
BolC5t30531H Brassica oleracea HOM05D004150 ORTHO05D032065 3.3e-38 163.7 186 53.8
Gohir.A02G079101 Gossypium hirsutum HOM05D004150 ORTHO05D005087 1.2e-35 155.2 136 60.3
CDE09G0238 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 4.5e-35 153.3 126 51.6
QL08p025867 Quercus lobata HOM05D004150 ORTHO05D005087 2.3e-31 141.0 190 45.8
Haze_09267 Corylus avellana HOM05D004150 ORTHO05D005087 3.9e-31 140.2 144 48.6
Haze_09268 Corylus avellana HOM05D004150 ORTHO05D005087 3.9e-31 140.2 144 48.6
EL10Ac9g22809 Beta vulgaris HOM05D004150 ORTHO05D005087 3.3e-30 137.1 170 47.6
VMungo1309G1261 Vigna mungo HOM05D004150 ORTHO05D005087 4.1e-28 130.2 108 63.0
Actinidia33318 Actinidia chinensis HOM05D004150 ORTHO05D005087 3.8e-26 123.6 178 41.6
arahy.Tifrunner.gnm1.ann1.H8RDCT Arachis hypogaea HOM05D004150 ORTHO05D005087 3.6e-24 117.1 88 59.1
arahy.Tifrunner.gnm1.ann1.R67SZW Arachis hypogaea HOM05D004150 ORTHO05D005087 3.6e-24 117.1 88 59.1
Aqoxy1G01962 Aquilegia oxysepala HOM05D004150 ORTHO05D005087 4.8e-21 106.7 106 52.8
Haze_11864 Corylus avellana HOM05D004150 ORTHO05D005087 2.7e-16 90.9 137 46.7
ECA240G1314 Erigeron canadensis HOM05D000062 ORTHO05D000043 9.7e-14 82.4 45 82.2
VMungo0251G3124 Vigna mungo HOM05D004150 ORTHO05D005087 5.9e-11 73.2 66 57.6


User provided reference genes

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