Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR043350 Cardamine hirsuta HOM05D003240 ORTHO05D009426 2.3e-69 265.8 131 100.0
Thhalv10012399m.g Eutrema salsugineum HOM05D003240 ORTHO05D009426 4.7e-62 241.5 131 90.8
AT1G53130 Arabidopsis thaliana HOM05D003240 ORTHO05D009426 6.1e-62 241.1 131 87.8
Carub.0001s4229 Capsella rubella HOM05D003240 ORTHO05D009426 1.1e-60 236.9 132 87.1
BcaB07g33356 Brassica carinata HOM05D003240 ORTHO05D009426 3.3e-60 235.3 131 89.3
AL1G61490 Arabidopsis lyrata HOM05D003240 ORTHO05D009426 4.4e-60 235.0 131 85.5
Sp1g39680 Schrenkiella parvula HOM05D003240 ORTHO05D009426 6.3e-59 231.1 132 87.9
A06p01190 Brassica napus HOM05D003240 ORTHO05D009426 8.2e-59 230.7 131 87.8
BraA06t23346Z Brassica rapa HOM05D003240 ORTHO05D009426 1.1e-58 230.3 131 87.0
BcaC08g43498 Brassica carinata HOM05D003240 ORTHO05D009426 1.3e-56 223.4 131 85.5
C06p08830 Brassica napus HOM05D003240 ORTHO05D009426 1.3e-56 223.4 131 85.5
BolC6t35961H Brassica oleracea HOM05D003240 ORTHO05D017503 1.3e-56 223.4 131 85.5
Aa31LG10G2000 Aethionema arabicum HOM05D003240 ORTHO05D009426 2.5e-55 219.2 132 81.8
Thhalv10022293m.g Eutrema salsugineum HOM05D003240 ORTHO05D009426 3.3e-52 208.8 132 78.8
Sp3g13510 Schrenkiella parvula HOM05D003240 ORTHO05D009426 2.2e-51 206.1 132 78.8
AL3G27700 Arabidopsis lyrata HOM05D003240 ORTHO05D009426 1.4e-50 203.4 131 77.1
Carub.0003s1496 Capsella rubella HOM05D003240 ORTHO05D009426 1.2e-46 190.3 132 72.0
THA.LOC104818082 Tarenaya hassleriana HOM05D003240 ORTHO05D009426 2.7e-46 189.1 132 74.2
BcaB04g20937 Brassica carinata HOM05D000882 ORTHO05D009426 1.8e-42 176.4 118 73.7
BcaC09g48486 Brassica carinata HOM05D003240 ORTHO05D009426 2.4e-34 149.4 131 60.3
BcaNung07375 Brassica carinata HOM05D003240 ORTHO05D009426 6.6e-32 141.4 131 56.5
CiPaw.12G118800 Carya illinoinensis HOM05D003240 ORTHO05D009426 1.0e-24 117.5 124 54.0
PGR083G0779 Punica granatum HOM05D003240 ORTHO05D009426 5.0e-24 115.2 118 54.2
TWI38G1889 Tripterygium wilfordii HOM05D003240 ORTHO05D009426 1.1e-23 114.0 122 52.5
Duzib213G1023 Durio zibethinus HOM05D003240 ORTHO05D009426 1.6e-22 110.2 123 48.0
FvH4_3g19820 Fragaria vesca HOM05D003240 ORTHO05D009426 3.6e-22 109.0 123 46.3
Thecc.07G091300 Theobroma cacao HOM05D003240 ORTHO05D009426 4.7e-22 108.6 128 50.0
FAN25G3490 Fragaria x ananassa HOM05D003240 ORTHO05D009426 8.0e-22 107.8 123 45.5
CAN.G162.53 Capsicum annuum HOM05D003240 ORTHO05D009426 1.1e-21 107.5 122 47.5
Nitab4.5_0001336g0090 Nicotiana tabacum HOM05D003240 ORTHO05D009426 1.1e-21 107.5 122 48.4
FAN21G1097 Fragaria x ananassa HOM05D003240 ORTHO05D009426 1.8e-21 106.7 123 45.5
FAN16G0971 Fragaria x ananassa HOM05D003240 ORTHO05D009426 4.0e-21 105.5 123 44.7
CANSAT56G1752 Cannabis sativa HOM05D003240 ORTHO05D009426 8.9e-21 104.4 90 55.6
Nitab4.5_0001241g0070 Nicotiana tabacum HOM05D003240 ORTHO05D009426 8.9e-21 104.4 126 46.8
RcHm_v2.0_Chr5g0033251 Rosa chinensis HOM05D003240 ORTHO05D009426 1.2e-20 104.0 122 45.9
Prupe.4G180300 Prunus persica HOM05D003240 ORTHO05D009426 2.0e-20 103.2 121 45.5
Ciclev10010456m.g Citrus clementina HOM05D003240 ORTHO05D009426 3.4e-20 102.4 117 51.3
Potri.011G118600 Populus trichocarpa HOM05D003240 ORTHO05D009426 4.4e-20 102.1 124 44.4
Nn1g06519 Nelumbo nucifera HOM05D003240 ORTHO05D009426 5.8e-20 101.7 127 40.2
Haze_09435 Corylus avellana HOM05D003240 ORTHO05D009426 1.3e-19 100.5 119 47.9
Cpa.g.sc80.73 Carica papaya HOM05D003240 ORTHO05D009426 1.7e-19 100.1 71 64.8
Sabra16G0261800 Salix brachista HOM05D003240 ORTHO05D009426 1.7e-19 100.1 119 44.5
Migut.M00801 Erythranthe guttata HOM05D003240 ORTHO05D009426 2.2e-19 99.8 128 46.9
Potri.001G399200 Populus trichocarpa HOM05D003240 ORTHO05D009426 2.2e-19 99.8 124 46.8
Eucgr.F01147 Eucalyptus grandis HOM05D003240 ORTHO05D009426 2.9e-19 99.4 124 46.8
MBI06_g23076_MAGBIO Magnolia biondii HOM05D003240 ORTHO05D009426 4.9e-19 98.6 118 47.5
Hma1.2p1_0458F.1_g157060 Hydrangea macrophylla HOM05D003240 ORTHO05D009426 6.4e-19 98.2 126 44.4
Oeu019313.1 Olea europaea HOM05D003240 ORTHO05D009426 6.4e-19 98.2 122 45.1
SGA_v2.0_scaffold73G24260 Striga asiatica HOM05D003240 ORTHO05D009426 6.4e-19 98.2 72 62.5
Haze_09433 Corylus avellana HOM05D003240 ORTHO05D009426 8.3e-19 97.8 119 47.1
Gorai.009G384600 Gossypium raimondii HOM05D003240 ORTHO05D009426 8.3e-19 97.8 123 41.5
COL.COLO4_27180 Corchorus olitorius HOM05D003240 ORTHO05D009426 1.1e-18 97.4 128 43.0
Gohir.D05G352500 Gossypium hirsutum HOM05D003240 ORTHO05D009426 1.9e-18 96.7 123 41.5
Gorai.009G385100 Gossypium raimondii HOM05D003240 ORTHO05D009426 1.9e-18 96.7 119 45.4
Aqoxy1G02389 Aquilegia oxysepala HOM05D003240 ORTHO05D009426 2.4e-18 96.3 126 46.0
Gohir.A04G031760 Gossypium hirsutum HOM05D003240 ORTHO05D009426 3.2e-18 95.9 119 45.4
Gohir.A04G031920 Gossypium hirsutum HOM05D003240 ORTHO05D009426 3.2e-18 95.9 119 45.4
Gohir.A04G032100 Gossypium hirsutum HOM05D003240 ORTHO05D009426 3.2e-18 95.9 123 41.5
Gohir.D05G352600 Gossypium hirsutum HOM05D003240 ORTHO05D009426 3.2e-18 95.9 119 45.4
Gorai.009G384700 Gossypium raimondii HOM05D003240 ORTHO05D009426 4.1e-18 95.5 119 45.4
DCAR_013111 Daucus carota HOM05D003240 ORTHO05D009426 7.0e-18 94.7 84 54.8
Gohir.D05G352700 Gossypium hirsutum HOM05D003240 ORTHO05D009426 7.0e-18 94.7 119 44.5
Gorai.009G384900 Gossypium raimondii HOM05D003240 ORTHO05D009426 9.2e-18 94.4 119 45.4
Manes.15G087500 Manihot esculenta HOM05D003240 ORTHO05D009426 9.2e-18 94.4 121 46.3
Atru.chr2.2486 Acer truncatum HOM05D003240 ORTHO05D009426 1.2e-17 94.0 128 46.1
MBI07_g30192_MAGBIO Magnolia biondii HOM05D003240 ORTHO05D009426 1.6e-17 93.6 122 41.8
MD03G1228400 Malus domestica HOM05D003240 ORTHO05D009426 2.1e-17 93.2 122 42.6
Sabra11G0103500 Salix brachista HOM05D003240 ORTHO05D009426 2.1e-17 93.2 124 40.3
Hma1.2p1_0458F.1_g157080 Hydrangea macrophylla HOM05D003240 ORTHO05D009426 3.5e-17 92.4 118 47.5
DCAR_017136 Daucus carota HOM05D003240 ORTHO05D009426 4.6e-17 92.0 125 42.4
Gohir.A04G032000 Gossypium hirsutum HOM05D003240 ORTHO05D009426 7.8e-17 91.3 120 44.2
Lj3g0021284 Lotus japonicus HOM05D003240 ORTHO05D009426 7.8e-17 91.3 128 43.0
Hma1.2p1_0458F.1_g157090 Hydrangea macrophylla HOM05D003240 ORTHO05D009426 1.3e-16 90.5 90 53.3
Phvul.005G072700 Phaseolus vulgaris HOM05D003240 ORTHO05D009426 1.3e-16 90.5 128 39.8
Dinv14922 Davidia involucrata HOM05D003240 ORTHO05D009426 1.7e-16 90.1 123 39.0
Glyma.12G225100 Glycine max HOM05D003240 ORTHO05D009426 1.7e-16 90.1 130 42.3
Gorai.009G385000 Gossypium raimondii HOM05D003240 ORTHO05D009426 1.7e-16 90.1 86 50.0
Medtr2g085370 Medicago truncatula HOM05D003240 ORTHO05D009426 1.7e-16 90.1 126 42.1
Nn4g25258 Nelumbo nucifera HOM05D003240 ORTHO05D009426 1.7e-16 90.1 125 40.0
Hma1.2p1_0898F.1_g234470 Hydrangea macrophylla HOM05D003240 ORTHO05D009426 2.3e-16 89.7 120 39.2
TAR627G0347 Trochodendron aralioides HOM05D003240 ORTHO05D009426 2.3e-16 89.7 56 66.1
VMungo1080G0324 Vigna mungo HOM05D003240 ORTHO05D009426 3.0e-16 89.4 127 40.9
Cfa020576 Carpinus fangiana HOM05D003240 ORTHO05D009426 6.6e-16 88.2 118 46.6
Sopen07g031280 Solanum pennellii HOM05D003240 ORTHO05D009426 8.6e-16 87.8 114 45.6
Prupe.4G180400 Prunus persica HOM05D003240 ORTHO05D009426 2.5e-15 86.3 122 45.1
PGSC0003DMG400012465 Solanum tuberosum HOM05D003240 ORTHO05D009426 5.6e-15 85.1 119 44.5
CSS0038111 Camellia sinensis var. sinensis HOM05D003240 ORTHO05D009426 2.1e-14 83.2 123 42.3
CSS0044584 Camellia sinensis var. sinensis HOM05D003240 ORTHO05D009426 2.8e-14 82.8 123 42.3
Cfa020578 Carpinus fangiana HOM05D003240 ORTHO05D009426 2.8e-14 82.8 116 45.7
Cc05_g11970 Coffea canephora HOM05D003240 ORTHO05D009426 6.2e-14 81.6 120 44.2
Lj3g0010365 Lotus japonicus HOM05D003240 ORTHO05D009426 1.8e-13 80.1 129 39.5
PSO675G7736 Papaver somniferum HOM05D003240 ORTHO05D009426 2.3e-13 79.7 58 56.9
PSO541G3864 Papaver somniferum HOM05D003240 ORTHO05D009426 6.8e-13 78.2 58 55.2
ATR0737G149 Amborella trichopoda HOM05D003240 ORTHO05D009426 2.0e-12 76.6 56 58.9
Nn1g04123 Nelumbo nucifera HOM05D003240 ORTHO05D009426 4.4e-12 75.5 41 70.7
Glyma.13G276200 Glycine max HOM05D003240 ORTHO05D009426 5.8e-12 75.1 121 37.2
TPR.G38961 Trifolium pratense HOM05D003240 ORTHO05D009426 9.9e-12 74.3 120 41.7
Medtr2g085360 Medicago truncatula HOM05D003240 ORTHO05D009426 1.7e-11 73.6 121 35.5
TPR.G39028 Trifolium pratense HOM05D003240 ORTHO05D009426 4.9e-11 72.0 89 44.9
Lalb_Chr03g0042631 Lupinus albus HOM05D003240 ORTHO05D009426 4.1e-10 68.9 125 39.2
unitig_37.g12571 Utricularia gibba HOM05D003240 ORTHO05D009426 4.6e-09 65.5 63 44.4
Rhsim06G0199500 Rhododendron simsii HOM05D003240 ORTHO05D009426 1.5e-07 60.5 46 60.9


User provided reference genes

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