Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR043340 Cardamine hirsuta HOM05D002373 ORTHO05D008661 5.7e-209 730.7 378 100.0
AL1G61480 Arabidopsis lyrata HOM05D002373 ORTHO05D008661 6.8e-162 574.3 323 91.6
Sp1g39670 Schrenkiella parvula HOM05D002373 ORTHO05D008661 7.0e-159 564.3 323 89.8
Thhalv10011660m.g Eutrema salsugineum HOM05D002373 ORTHO05D008661 1.6e-158 563.1 323 90.4
Carub.0001s4228 Capsella rubella HOM05D002373 ORTHO05D008661 8.6e-157 557.4 323 89.5
AT1G53120 Arabidopsis thaliana HOM05D002373 ORTHO05D008661 1.9e-156 556.2 323 89.5
BcaC08g44045 Brassica carinata HOM05D002373 ORTHO05D008661 1.5e-153 546.6 324 86.7
BolC6t36626H Brassica oleracea HOM05D002373 ORTHO05D008661 5.8e-153 544.7 324 86.4
A05p18620 Brassica napus HOM05D002373 ORTHO05D008661 1.3e-152 543.5 324 87.3
C06p14460 Brassica napus HOM05D002373 ORTHO05D008661 1.7e-152 543.1 324 86.1
BcaB02g10929 Brassica carinata HOM05D002373 ORTHO05D005805 9.2e-151 537.3 322 86.3
Aa31LG10G2010 Aethionema arabicum HOM05D002373 ORTHO05D008661 8.9e-146 520.8 326 81.3
THA.LOC104810464 Tarenaya hassleriana HOM05D002373 ORTHO05D008661 1.2e-142 510.4 325 81.2
BraA05t20753Z Brassica rapa HOM05D002373 ORTHO05D008661 8.1e-139 497.7 277 91.0
Thecc.07G090300 Theobroma cacao HOM05D002373 ORTHO05D008661 2.0e-129 466.5 323 73.7
Cpa.g.sc80.70 Carica papaya HOM05D002373 ORTHO05D008661 1.7e-128 463.4 326 73.3
Gohir.A13G146100 Gossypium hirsutum HOM05D002373 ORTHO05D008661 2.7e-126 456.1 323 71.2
Gohir.D13G151000 Gossypium hirsutum HOM05D002373 ORTHO05D008661 2.7e-126 456.1 324 72.2
COL.COLO4_27178 Corchorus olitorius HOM05D002373 ORTHO05D008661 1.5e-124 450.3 323 70.6
Ciclev10008924m.g Citrus clementina HOM05D002373 ORTHO05D008661 4.3e-124 448.7 325 69.2
GSVIVG01014327001 Vitis vinifera HOM05D002373 ORTHO05D008661 1.7e-120 436.8 329 69.3
Potri.011G119800 Populus trichocarpa HOM05D002373 ORTHO05D008661 3.8e-120 435.6 325 70.8
CSS0006904 Camellia sinensis var. sinensis HOM05D002373 ORTHO05D008661 1.9e-119 433.3 328 68.3
Actinidia35249 Actinidia chinensis HOM05D002373 ORTHO05D008661 1.2e-118 430.6 323 69.3
CANSAT56G3654 Cannabis sativa HOM05D002373 ORTHO05D008661 3.5e-118 429.1 324 68.8
TAR624G1149 Trochodendron aralioides HOM05D002373 ORTHO05D008661 7.9e-118 427.9 284 75.4
RcHm_v2.0_Chr5g0033281 Rosa chinensis HOM05D002373 ORTHO05D008661 1.0e-117 427.6 323 65.9
CsaV3_3G019460 Cucumis sativus L. HOM05D002373 ORTHO05D008661 2.3e-117 426.4 328 66.8
DCAR_019560 Daucus carota HOM05D002373 ORTHO05D008661 2.3e-117 426.4 278 74.1
HanXRQChr12g0364201 Helianthus annuus HOM05D002373 ORTHO05D008661 2.3e-117 426.4 292 71.9
Sed0026190 Sechium edule HOM05D002373 ORTHO05D008661 2.3e-117 426.4 330 66.4
Sabra11G0104200 Salix brachista HOM05D002373 ORTHO05D008661 3.0e-117 426.0 271 77.5
MD11G1252400 Malus domestica HOM05D002373 ORTHO05D008661 3.9e-117 425.6 332 66.3
CSS0005109 Camellia sinensis var. sinensis HOM05D002373 ORTHO05D008661 1.5e-116 423.7 328 67.1
MELO3C019408.2 Cucumis melo HOM05D002373 ORTHO05D008661 3.3e-116 422.5 280 73.9
FvH4_3g19840 Fragaria vesca HOM05D002373 ORTHO05D008661 3.3e-116 422.5 322 65.2
FAN11G3740 Fragaria x ananassa HOM05D002373 ORTHO05D008661 2.1e-115 419.9 322 65.2
Lalb_Chr25g0286331 Lupinus albus HOM05D002373 ORTHO05D008661 1.1e-114 417.5 307 67.4
Prupe.4G180500 Prunus persica HOM05D002373 ORTHO05D008661 1.4e-114 417.2 328 66.2
Ca_03504_v3 Cicer arietinum L. HOM05D002373 ORTHO05D008661 1.8e-114 416.8 322 64.9
Lj3g0019501 Lotus japonicus HOM05D002373 ORTHO05D008661 2.4e-114 416.4 329 65.0
Atru.BG.257.p Acer truncatum HOM05D002373 ORTHO05D008661 3.1e-114 416.0 254 78.7
FAN25G2634 Fragaria x ananassa HOM05D002373 ORTHO05D008661 5.3e-114 415.2 326 64.4
Glyma.12G224900 Glycine max HOM05D002373 ORTHO05D008661 5.3e-114 415.2 326 64.1
arahy.Tifrunner.gnm1.ann1.CVL1T8 Arachis hypogaea HOM05D002373 ORTHO05D008661 1.2e-113 414.1 333 64.6
Atru.BG.152.p Acer truncatum HOM05D002373 ORTHO05D008661 1.5e-113 413.7 254 78.3
arahy.Tifrunner.gnm1.ann1.D1WMTZ Arachis hypogaea HOM05D002373 ORTHO05D008661 2.0e-113 413.3 333 64.6
Dinv20179 Davidia involucrata HOM05D002373 ORTHO05D008661 2.0e-113 413.3 330 66.1
Nn1g04122 Nelumbo nucifera HOM05D002373 ORTHO05D008661 2.0e-113 413.3 270 76.7
VMungo1080G1315 Vigna mungo HOM05D002373 ORTHO05D008661 2.6e-113 412.9 323 65.0
ClCG05G009320 Citrullus lanatus HOM05D002373 ORTHO05D008661 3.4e-113 412.5 334 63.8
ECA240G3063 Erigeron canadensis HOM05D002373 ORTHO05D008661 3.4e-113 412.5 279 71.3
QL08p022081 Quercus lobata HOM05D002373 ORTHO05D008661 7.6e-113 411.4 332 63.6
Eucgr.F01146 Eucalyptus grandis HOM05D002373 ORTHO05D008661 9.9e-113 411.0 283 72.4
Psat5g243920 Pisum sativum HOM05D002373 ORTHO05D008661 1.7e-112 410.2 265 72.8
TPR.G39017 Trifolium pratense HOM05D002373 ORTHO05D008661 2.9e-112 409.5 265 72.8
PGSC0003DMG400015321 Solanum tuberosum HOM05D002373 ORTHO05D008661 3.8e-112 409.1 308 66.9
Medtr2g085340 Medicago truncatula HOM05D002373 ORTHO05D008661 4.9e-112 408.7 265 73.2
MBI06_g23077_MAGBIO Magnolia biondii HOM05D002373 ORTHO05D008661 8.4e-112 407.9 328 64.6
Solyc12g013870.3 Solanum lycopersicum HOM05D002373 ORTHO05D008661 2.4e-111 406.4 326 63.2
Lsat_1_v5_gn_9_97941 Lactuca sativa HOM05D002373 ORTHO05D008661 4.2e-111 405.6 293 69.3
CAN.G213.9 Capsicum annuum HOM05D002373 ORTHO05D008661 7.1e-111 404.8 324 63.9
Sopen12g007190 Solanum pennellii HOM05D002373 ORTHO05D008661 7.1e-111 404.8 278 71.2
Cfa020577 Carpinus fangiana HOM05D002373 ORTHO05D008661 9.3e-111 404.4 328 62.8
CiPaw.11G170200 Carya illinoinensis HOM05D002373 ORTHO05D008661 9.3e-111 404.4 343 62.4
Phvul.002G286700 Phaseolus vulgaris HOM05D002373 ORTHO05D008661 2.1e-110 403.3 329 63.5
Lj1C842T3 Lonicera japonica HOM05D002373 ORTHO05D008661 3.5e-110 402.5 332 63.9
PGR083G2563 Punica granatum HOM05D002373 ORTHO05D008661 6.0e-110 401.7 334 62.9
Migut.H01944 Erythranthe guttata HOM05D002373 ORTHO05D008661 3.9e-109 399.1 332 63.6
MSTRG.12905 Avicennia marina HOM05D002373 ORTHO05D008661 6.7e-109 398.3 328 62.8
vmacro09529 Vaccinium macrocarpon HOM05D002373 ORTHO05D008661 2.5e-108 396.4 270 74.4
Manes.03G109500 Manihot esculenta HOM05D002373 ORTHO05D008661 1.4e-106 390.6 237 79.3
Aqoxy1G02390 Aquilegia oxysepala HOM05D002373 ORTHO05D008661 1.2e-105 387.5 328 62.8
EL10Ac4g08187 Beta vulgaris HOM05D002373 ORTHO05D008661 4.5e-105 385.6 328 61.3
SGA_v2.0_scaffold70G23676 Striga asiatica HOM05D002373 ORTHO05D008661 4.5e-105 385.6 347 59.1
Nitab4.5_0009292g0020 Nicotiana tabacum HOM05D002373 ORTHO05D008661 5.8e-105 385.2 310 65.2
Peaxi162Scf00000g03511 Petunia axillaris HOM05D002373 ORTHO05D008661 2.9e-104 382.9 308 64.9
Hund20000 Selenicereus undatus HOM05D002373 ORTHO05D008661 7.1e-103 378.3 322 61.8
TWI38G1988 Tripterygium wilfordii HOM05D002373 ORTHO05D008661 7.9e-102 374.8 276 68.8
AUR62019433 Chenopodium quinoa HOM05D002373 ORTHO05D008661 1.3e-101 374.0 272 68.4
AUR62039201 Chenopodium quinoa HOM05D002373 ORTHO05D008661 6.7e-101 371.7 272 68.0
CDE02G2303 Ceratophyllum demersum HOM05D002373 ORTHO05D008661 8.7e-101 371.3 234 76.1
Zm00001eb153060 Zea mays HOM05D002373 ORTHO05D008661 8.7e-101 371.3 270 68.5
Os01g0747700 Oryza sativa ssp. japonica HOM05D002373 ORTHO05D008661 4.3e-100 369.0 286 64.7
Ah.06g184370 Amaranthus hybridus HOM05D002373 ORTHO05D008661 5.7e-100 368.6 269 66.9
FAN16G2188 Fragaria x ananassa HOM05D002373 ORTHO05D008661 1.3e-99 367.5 236 72.9
HPP92_024439 Vanilla planifolia HOM05D002373 ORTHO05D008661 9.0e-98 361.3 251 68.9
ATR0737G132 Amborella trichopoda HOM05D002373 ORTHO05D008661 2.2e-96 356.7 246 69.5
Phvul.005G072600 Phaseolus vulgaris HOM05D002373 ORTHO05D008661 1.4e-95 354.0 237 72.6
unitig_26.g9527 Utricularia gibba HOM05D002373 ORTHO05D008661 3.6e-94 349.4 264 67.0
Gorai.013G170800 Gossypium raimondii HOM05D002373 ORTHO05D008661 5.1e-93 345.5 210 80.5
Haze_09434 Corylus avellana HOM05D002373 ORTHO05D008661 7.4e-92 341.7 325 55.4
Nitab4.5_0000332g0080 Nicotiana tabacum HOM05D002373 ORTHO05D008661 6.3e-91 338.6 307 59.6
Rhsim04G0021500 Rhododendron simsii HOM05D002373 ORTHO05D008661 1.1e-90 337.8 267 67.8
Sc03g0010080 Simmondsia chinensis HOM05D002373 ORTHO05D008661 1.1e-90 337.8 259 66.0
FAN21G4050 Fragaria x ananassa HOM05D002373 ORTHO05D008661 2.2e-88 330.1 209 74.2
PSO541G6350 Papaver somniferum HOM05D002373 ORTHO05D008661 9.4e-87 324.7 231 69.3
Oeu060559.2 Olea europaea HOM05D002373 ORTHO05D008661 3.3e-84 316.2 387 48.3
Pp3c20_21790 Physcomitrium patens HOM05D002373 ORTHO05D008661 1.4e-77 294.3 338 47.3
AagrBONN_evm.TU.Sc2ySwM_344.3401 Anthoceros agrestis HOM05D002373 ORTHO05D008661 1.1e-74 284.6 278 50.0
Gorai.013G169000 Gossypium raimondii HOM05D002373 ORTHO05D008661 9.1e-74 281.6 221 65.2
Mapoly0051s0038 Marchantia polymorpha HOM05D002373 ORTHO05D008661 1.4e-69 267.7 284 51.1
SMO367G1013 Selaginella moellendorffii HOM05D002373 ORTHO05D008661 3.0e-69 266.5 243 55.1
Glyma.13G276400 Glycine max HOM05D002373 ORTHO05D008661 4.8e-67 259.2 241 56.4
CDE08G0691 Ceratophyllum demersum HOM05D002373 ORTHO05D008661 2.1e-62 243.8 148 79.7
Cre12.g502950 Chlamydomonas reinhardtii HOM05D002373 ORTHO05D008661 4.7e-62 242.7 251 51.8
MCO14G219 Micromonas commoda HOM05D002373 ORTHO05D008661 2.0e-52 210.7 292 43.5
CSS0025404 Camellia sinensis var. sinensis HOM05D002373 ORTHO05D008661 7.0e-50 202.2 129 74.4
Thecc.07G090900 Theobroma cacao HOM05D002373 ORTHO05D008661 1.2e-41 174.9 105 79.0
Gohir.D13G152082 Gossypium hirsutum HOM05D002373 ORTHO05D008661 4.6e-33 146.4 88 84.1
Gorai.013G170900 Gossypium raimondii HOM05D002373 ORTHO05D008661 1.3e-32 144.8 88 84.1
Gohir.A13G147066 Gossypium hirsutum HOM05D002373 ORTHO05D008661 1.2e-28 131.7 81 82.7
A01p26780 Brassica napus HOM05D002373 ORTHO05D008661 2.3e-24 117.5 76 80.3
CSS0007754 Camellia sinensis var. sinensis HOM05D002373 ORTHO05D008661 9.9e-20 102.1 65 73.8
PRCOL_00005720 Prasinoderma coloniale HOM05D002373 ORTHO05D008661 2.2e-19 100.9 271 31.7
CSS0007182 Camellia sinensis var. sinensis HOM05D002373 ORTHO05D008661 3.8e-19 100.1 64 75.0
Aa31LG8G11430 Aethionema arabicum HOM05D002105 ORTHO05D001271 1.1e-13 82.0 117 44.4
BcaC05g28656 Brassica carinata HOM05D022203 ORTHO05D024331 1.1e-10 72.0 36 97.2
Atru.chr2.2601 Acer truncatum HOM05D002373 ORTHO05D013107 1.9e-07 61.2 35 80.0
MD11G1248800 Malus domestica HOM05D002373 ORTHO05D008661 2.8e-06 57.4 95 42.1
C05p47850 Brassica napus HOM05D022203 ORTHO05D024331 8.1e-06 55.8 28 92.9


User provided reference genes

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