Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR041910 Cardamine hirsuta HOM05D004764 ORTHO05D005580 2.3e-163 578.9 310 100.0
Sp1g38390 Schrenkiella parvula HOM05D004764 ORTHO05D005580 2.2e-150 535.8 310 91.6
Thhalv10011542m.g Eutrema salsugineum HOM05D004764 ORTHO05D005580 4.9e-150 534.6 310 91.9
AL1G59680 Arabidopsis lyrata HOM05D004764 ORTHO05D005580 7.1e-149 530.8 311 92.0
BcaB02g11053 Brassica carinata HOM05D004764 ORTHO05D005580 1.5e-146 523.1 312 89.7
AT1G51740 Arabidopsis thaliana HOM05D004764 ORTHO05D005580 1.9e-146 522.7 311 90.7
Carub.0001s4061 Capsella rubella HOM05D004764 ORTHO05D005580 3.6e-145 518.5 311 89.1
Aa31LG10G3070 Aethionema arabicum HOM05D004764 ORTHO05D005580 4.0e-144 515.0 310 87.7
BcaB07g33630 Brassica carinata HOM05D004764 ORTHO05D005580 2.7e-140 502.3 297 90.6
BraA06t23434Z Brassica rapa HOM05D004764 ORTHO05D005580 5.1e-139 498.0 294 89.8
BolC6t35797H Brassica oleracea HOM05D004764 ORTHO05D005580 1.5e-138 496.5 294 89.5
A06p02240 Brassica napus HOM05D004764 ORTHO05D005580 1.9e-138 496.1 294 89.8
BcaC08g43344 Brassica carinata HOM05D004764 ORTHO05D005580 3.2e-133 478.8 286 89.2
C06p07040 Brassica napus HOM05D004764 ORTHO05D005580 1.2e-132 476.9 286 88.1
THA.LOC104816565 Tarenaya hassleriana HOM05D004764 ORTHO05D005580 2.7e-132 475.7 310 81.9
Medtr6g084580 Medicago truncatula HOM05D004764 ORTHO05D005580 6.4e-126 454.5 310 77.1
Potri.010G194300 Populus trichocarpa HOM05D004764 ORTHO05D005580 2.1e-124 449.5 312 76.9
Psat1g037840 Pisum sativum HOM05D004764 ORTHO05D005580 6.0e-124 448.0 310 75.8
Cpa.g.sc19.234 Carica papaya HOM05D004764 ORTHO05D005580 3.9e-123 445.3 310 75.5
TWI73G0601 Tripterygium wilfordii HOM05D004764 ORTHO05D005580 5.1e-123 444.9 310 75.8
QL07p043722 Quercus lobata HOM05D004764 ORTHO05D005580 1.1e-122 443.7 309 76.1
TWI09G1390 Tripterygium wilfordii HOM05D004764 ORTHO05D005580 3.3e-122 442.2 310 75.2
Ca_25497_v3 Cicer arietinum L. HOM05D004764 ORTHO05D005580 4.3e-122 441.8 310 75.5
Manes.10G019100 Manihot esculenta HOM05D004764 ORTHO05D005580 4.3e-122 441.8 310 74.8
Ciclev10032191m.g Citrus clementina HOM05D004764 ORTHO05D005580 1.3e-121 440.3 310 75.8
Cfa017589 Carpinus fangiana HOM05D004764 ORTHO05D005580 3.7e-121 438.7 310 74.8
Glyma.09G184900 Glycine max HOM05D004764 ORTHO05D005580 3.7e-121 438.7 310 74.8
MD02G1196300 Malus domestica HOM05D004764 ORTHO05D005580 4.8e-121 438.3 310 74.5
Lj2g0017902 Lotus japonicus HOM05D004764 ORTHO05D005580 6.2e-121 438.0 310 74.8
Atru.chr12.324 Acer truncatum HOM05D004764 ORTHO05D005580 1.1e-120 437.2 310 75.2
Sed0006926 Sechium edule HOM05D004764 ORTHO05D005580 1.8e-120 436.4 311 74.9
CiPaw.10G131000 Carya illinoinensis HOM05D004764 ORTHO05D005580 2.4e-120 436.0 310 75.5
Ciclev10016032m.g Citrus clementina HOM05D004764 ORTHO05D005580 2.4e-120 436.0 313 75.1
Atru.chr12.285 Acer truncatum HOM05D004764 ORTHO05D005580 3.1e-120 435.6 310 74.8
Prupe.2G152400 Prunus persica HOM05D004764 ORTHO05D005580 4.0e-120 435.3 310 74.2
Phvul.004G157700 Phaseolus vulgaris HOM05D004764 ORTHO05D005580 5.3e-120 434.9 310 74.2
VMungo0464G2049 Vigna mungo HOM05D004764 ORTHO05D005580 5.3e-120 434.9 310 74.2
COL.COLO4_25609 Corchorus olitorius HOM05D004764 ORTHO05D005580 6.9e-120 434.5 310 74.5
Lj1g0004796 Lotus japonicus HOM05D004764 ORTHO05D005580 6.9e-120 434.5 310 74.5
Lalb_Chr14g0371191 Lupinus albus HOM05D004764 ORTHO05D005580 2.0e-119 433.0 310 74.8
Thecc.10G137500 Theobroma cacao HOM05D004764 ORTHO05D005580 2.0e-119 433.0 310 75.5
Gorai.011G278800 Gossypium raimondii HOM05D004764 ORTHO05D005580 3.4e-119 432.2 310 74.2
GSVIVG01016388001 Vitis vinifera HOM05D004764 ORTHO05D005580 3.4e-119 432.2 310 72.9
Gohir.A10G228400 Gossypium hirsutum HOM05D004764 ORTHO05D005580 4.5e-119 431.8 310 74.2
CANSAT21G1253 Cannabis sativa HOM05D004764 ORTHO05D005580 9.9e-119 430.6 310 73.2
Duzib106G0320 Durio zibethinus HOM05D004764 ORTHO05D005580 9.9e-119 430.6 310 73.9
vmacro01597 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 1.3e-118 430.3 318 72.3
HanXRQChr12g0369401 Helianthus annuus HOM05D004764 ORTHO05D005580 1.7e-118 429.9 316 73.4
Lalb_Chr22g0353041 Lupinus albus HOM05D004764 ORTHO05D005580 1.7e-118 429.9 310 74.2
Hund16007 Selenicereus undatus HOM05D004764 ORTHO05D005580 6.4e-118 427.9 310 72.9
Migut.F01566 Erythranthe guttata HOM05D004764 ORTHO05D005580 8.4e-118 427.6 319 70.2
RcHm_v2.0_Chr1g0351821 Rosa chinensis HOM05D004764 ORTHO05D005580 8.4e-118 427.6 310 72.6
CSS0016003 Camellia sinensis var. sinensis HOM05D004764 ORTHO05D005580 1.4e-117 426.8 318 71.4
TAR623G1788 Trochodendron aralioides HOM05D004764 ORTHO05D005580 1.4e-117 426.8 310 73.2
EL10Ac2g04766 Beta vulgaris HOM05D004764 ORTHO05D005580 2.4e-117 426.0 310 71.6
Nitab4.5_0012769g0010 Nicotiana tabacum HOM05D004764 ORTHO05D005580 2.4e-117 426.0 318 71.4
Sopen03g006610 Solanum pennellii HOM05D004764 ORTHO05D005580 4.2e-117 425.2 318 71.4
CSS0010099 Camellia sinensis var. sinensis HOM05D004764 ORTHO05D005580 5.5e-117 424.9 318 71.1
Dinv20933 Davidia involucrata HOM05D004764 ORTHO05D005580 7.1e-117 424.5 317 71.3
Dinv21011 Davidia involucrata HOM05D004764 ORTHO05D005580 7.1e-117 424.5 317 71.3
DCAR_011775 Daucus carota HOM05D004764 ORTHO05D005580 1.2e-116 423.7 318 70.4
Nitab4.5_0000344g0160 Nicotiana tabacum HOM05D004764 ORTHO05D005580 1.6e-116 423.3 318 71.1
TAR369G1012 Trochodendron aralioides HOM05D004764 ORTHO05D005580 1.6e-116 423.3 310 72.3
Ah.02g115950 Amaranthus hybridus HOM05D004764 ORTHO05D005580 2.7e-116 422.5 310 71.0
MELO3C008270.2 Cucumis melo HOM05D004764 ORTHO05D005580 2.7e-116 422.5 310 72.6
ECA233G3311 Erigeron canadensis HOM05D004764 ORTHO05D005580 2.7e-116 422.5 319 71.8
Solyc04g071730.3 Solanum lycopersicum HOM05D004764 ORTHO05D005580 3.5e-116 422.2 318 70.4
CAN.G308.66 Capsicum annuum HOM05D004764 ORTHO05D005580 4.6e-116 421.8 318 69.8
MD07G1124900 Malus domestica HOM05D004764 ORTHO05D005580 6.0e-116 421.4 310 71.9
PGSC0003DMG400006372 Solanum tuberosum HOM05D004764 ORTHO05D005580 6.0e-116 421.4 318 70.4
CAN.G2159.1 Capsicum annuum HOM05D004764 ORTHO05D005580 1.3e-115 420.2 318 69.5
Ah.16g104720 Amaranthus hybridus HOM05D004764 ORTHO05D005580 2.3e-115 419.5 310 71.0
Sopen04g027710 Solanum pennellii HOM05D004764 ORTHO05D005580 2.3e-115 419.5 318 69.8
Cc02_g20660 Coffea canephora HOM05D004764 ORTHO05D005580 3.0e-115 419.1 318 69.8
FvH4_7g12790 Fragaria vesca HOM05D004764 ORTHO05D005580 6.7e-115 417.9 310 70.3
SalBow6G7043 Salvia bowleyana HOM05D004764 ORTHO05D005580 8.7e-115 417.5 318 69.8
ClCG11G006420 Citrullus lanatus HOM05D004764 ORTHO05D005580 1.1e-114 417.2 311 72.7
Lj1A432T27 Lonicera japonica HOM05D004764 ORTHO05D005580 1.1e-114 417.2 318 70.4
FAN10G3109 Fragaria x ananassa HOM05D004764 ORTHO05D005580 1.5e-114 416.8 310 70.0
Eucgr.G03020 Eucalyptus grandis HOM05D004764 ORTHO05D005580 1.9e-114 416.4 310 73.9
MSTRG.8305 Avicennia marina HOM05D004764 ORTHO05D005580 3.3e-114 415.6 318 69.2
SGA_v2.0_scaffold130G34221 Striga asiatica HOM05D004764 ORTHO05D005580 3.3e-114 415.6 318 68.6
arahy.Tifrunner.gnm1.ann1.BR1H5V Arachis hypogaea HOM05D004764 ORTHO05D005580 7.4e-114 414.5 310 72.3
PGR142G0534 Punica granatum HOM05D004764 ORTHO05D005580 1.6e-113 413.3 311 71.7
FAN10G1216 Fragaria x ananassa HOM05D004764 ORTHO05D005580 2.1e-113 412.9 309 69.3
Lj1C949T1 Lonicera japonica HOM05D004764 ORTHO05D005580 1.4e-112 410.2 318 71.1
Lsat_1_v5_gn_8_14200 Lactuca sativa HOM05D004764 ORTHO05D005580 1.8e-112 409.8 307 70.4
Rhsim09G0171300 Rhododendron simsii HOM05D004764 ORTHO05D005580 1.8e-112 409.8 362 64.1
Aqoxy1G00756 Aquilegia oxysepala HOM05D004764 ORTHO05D005580 2.9e-110 402.5 310 68.7
arahy.Tifrunner.gnm1.ann1.V0Z2W7 Arachis hypogaea HOM05D004764 ORTHO05D005580 8.4e-110 401.0 310 70.6
Aqoxy7G01280 Aquilegia oxysepala HOM05D004764 ORTHO05D005580 3.2e-109 399.1 312 68.6
Peaxi162Scf00064g00126 Petunia axillaris HOM05D004764 ORTHO05D005580 7.1e-109 397.9 310 68.1
FAN01G0026 Fragaria x ananassa HOM05D004764 ORTHO05D005580 1.2e-108 397.1 345 62.9
PSO585G0029 Papaver somniferum HOM05D004764 ORTHO05D005580 1.2e-108 397.1 310 67.7
Peaxi162Scf00010g01114 Petunia axillaris HOM05D004764 ORTHO05D005580 6.0e-108 394.8 310 67.7
Os04g0530400 Oryza sativa ssp. japonica HOM05D004764 ORTHO05D005580 1.8e-107 393.3 315 68.9
Os12g0154400 Oryza sativa ssp. japonica HOM05D004764 ORTHO05D005580 1.8e-107 393.3 315 68.6
PSO384G2817 Papaver somniferum HOM05D004764 ORTHO05D005580 1.5e-106 390.2 310 67.1
Zm00001eb429110 Zea mays HOM05D004764 ORTHO05D005580 5.7e-106 388.3 316 66.5
CsaV3_6G001590 Cucumis sativus L. HOM05D004764 ORTHO05D005580 1.4e-104 383.6 285 72.6
Gohir.D10G242400 Gossypium hirsutum HOM05D004764 ORTHO05D005580 1.5e-103 380.2 278 73.7
Lsat_1_v5_gn_9_12660 Lactuca sativa HOM05D004764 ORTHO05D005580 3.2e-101 372.5 310 64.8
Solyc03g033850.3 Solanum lycopersicum HOM05D004764 ORTHO05D005580 5.5e-101 371.7 281 70.5
Actinidia00927 Actinidia chinensis HOM05D004764 ORTHO05D005580 3.0e-99 365.9 319 65.5
AUR62041843 Chenopodium quinoa HOM05D004764 ORTHO05D005580 5.1e-99 365.2 310 63.2
unitig_0.g2163 Utricularia gibba HOM05D004764 ORTHO05D005580 8.7e-99 364.4 321 62.9
Haze_20561 Corylus avellana HOM05D004764 ORTHO05D005580 1.9e-98 363.2 262 72.9
Sc11g0007530 Simmondsia chinensis HOM05D004764 ORTHO05D005580 5.7e-98 361.7 262 72.1
Sabra10G0149400 Salix brachista HOM05D004764 ORTHO05D005580 3.7e-97 359.0 279 68.1
ATR0736G027 Amborella trichopoda HOM05D004764 ORTHO05D005580 6.9e-96 354.8 312 61.5
Oeu013001.1 Olea europaea HOM05D004764 ORTHO05D005580 1.2e-95 354.0 276 67.4
AUR62032348 Chenopodium quinoa HOM05D004764 ORTHO05D005580 2.9e-94 349.4 262 67.2
Glyma.07G091000 Glycine max HOM05D004764 ORTHO05D005580 6.5e-94 348.2 310 63.9
SHI03532 Sapria himalayana HOM05D004764 ORTHO05D005580 7.2e-93 344.7 314 61.8
FAN06G0806 Fragaria x ananassa HOM05D004764 ORTHO05D005580 9.4e-93 344.4 256 71.5
SEGI_31890 Sequoiadendron giganteum HOM05D004764 ORTHO05D005580 9.7e-90 334.3 315 57.5
Nn5g27977 Nelumbo nucifera HOM05D004764 ORTHO05D005580 5.3e-88 328.6 310 60.6
Lj1C433T7 Lonicera japonica HOM05D004764 ORTHO05D005580 7.2e-85 318.2 256 65.6
Nitab4.5_0011923g0010 Nicotiana tabacum HOM05D004764 ORTHO05D005580 8.0e-84 314.7 310 56.1
vmacro10073 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 2.0e-79 300.1 228 71.5
HPP92_027811 Vanilla planifolia HOM05D004764 ORTHO05D005580 4.5e-79 298.9 310 54.5
Potri.008G063100 Populus trichocarpa HOM05D004764 ORTHO05D005580 2.3e-75 286.6 221 68.3
Lj1C435T9 Lonicera japonica HOM05D004764 ORTHO05D005580 6.7e-75 285.0 242 62.8
TPR.G27934 Trifolium pratense HOM05D004764 ORTHO05D005580 2.0e-74 283.5 740 32.2
Nitab4.5_0002828g0150 Nicotiana tabacum HOM05D004764 ORTHO05D005580 5.0e-70 268.9 391 46.8
Mapoly0024s0083 Marchantia polymorpha HOM05D004764 ORTHO05D005580 8.5e-70 268.1 314 47.5
Pp3c6_24680 Physcomitrium patens HOM05D004764 ORTHO05D005580 2.3e-67 260.0 315 47.0
SMO356G0668 Selaginella moellendorffii HOM05D004764 ORTHO05D005580 5.7e-66 255.4 310 50.3
C06p13300 Brassica napus HOM05D001194 ORTHO05D005580 2.8e-57 226.5 258 58.5
Oeu032670.1 Olea europaea HOM05D004764 ORTHO05D005580 7.0e-56 221.9 178 70.8
AagrBONN_evm.TU.Sc2ySwM_368.928 Anthoceros agrestis HOM05D004764 ORTHO05D005580 1.5e-53 214.2 292 44.2
CDE09G0086 Ceratophyllum demersum HOM05D004764 ORTHO05D005580 8.0e-52 208.4 184 63.0
Zm00001eb427200 Zea mays HOM05D004764 ORTHO05D005580 1.7e-46 190.7 155 71.0
Actinidia27825 Actinidia chinensis HOM05D004764 ORTHO05D005580 3.6e-44 183.0 150 70.7
BolC6t36490H Brassica oleracea HOM05D001194 ORTHO05D000015 1.1e-43 181.4 250 53.2
PGSC0003DMG400022548 Solanum tuberosum HOM05D004764 ORTHO05D005580 5.2e-43 179.1 120 80.8
Glyma.17G199500 Glycine max HOM05D004764 ORTHO05D005580 3.7e-41 172.9 120 80.0
PSO339G3467 Papaver somniferum HOM05D004764 ORTHO05D005580 4.6e-39 166.0 143 65.7
BcaC08g43937 Brassica carinata HOM05D001194 ORTHO05D004786 1.2e-36 157.9 127 74.0
Sabra08G0046500 Salix brachista HOM05D004764 ORTHO05D005580 1.2e-34 151.4 244 40.2
MCO05G144 Micromonas commoda HOM05D004764 ORTHO05D005580 5.8e-34 149.1 315 34.3
HPP92_004405 Vanilla planifolia HOM05D004764 ORTHO05D005580 7.5e-34 148.7 115 64.3
Eucgr.L03566 Eucalyptus grandis HOM05D004764 ORTHO05D005580 1.5e-29 134.4 91 74.7
BcaC08g43936 Brassica carinata HOM05D004764 ORTHO05D005580 9.5e-29 131.7 99 74.7
vmacro10891 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 4.9e-25 119.4 141 56.0
CBR_g29687 Chara braunii HOM05D004764 ORTHO05D005580 7.1e-24 115.5 93 63.4
vmacro10074 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 7.1e-24 115.5 110 55.5
Actinidia13909 Actinidia chinensis HOM05D004764 ORTHO05D005580 2.8e-20 103.6 97 60.8
SEGI_41058 Sequoiadendron giganteum HOM05D004764 ORTHO05D005580 8.1e-20 102.1 89 57.3
Ah.16g102910 Amaranthus hybridus HOM05D004764 ORTHO05D005580 1.7e-14 84.3 57 75.4
Actinidia13908 Actinidia chinensis HOM05D004764 ORTHO05D005580 5.1e-14 82.8 58 67.2
Sc11g0007520 Simmondsia chinensis HOM05D004764 ORTHO05D005580 1.3e-12 78.2 84 53.6
Cre17.g711450 Chlamydomonas reinhardtii HOM05D004764 ORTHO05D005580 4.8e-12 76.3 397 23.9
BraA05t20843Z Brassica rapa HOM05D000051 ORTHO05D000015 2.9e-09 67.0 42 81.0
PRCOL_00004763 Prasinoderma coloniale HOM05D001748 ORTHO05D001759 6.7e-06 55.8 120 33.3
Actinidia13923 Actinidia chinensis HOM05D002250 ORTHO05D002393 8.7e-06 55.5 338 24.6


User provided reference genes

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