Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR041100 Cardamine hirsuta HOM05D007702 ORTHO05D009736 1.4e-122 443.4 290 100.0
Carub.0001s3998 Capsella rubella HOM05D007702 ORTHO05D009736 1.9e-108 396.4 290 80.3
AL1G58880 Arabidopsis lyrata HOM05D007702 ORTHO05D009736 4.3e-108 395.2 293 82.3
AT1G51080 Arabidopsis thaliana HOM05D007702 ORTHO05D009736 2.4e-106 389.4 290 82.1
Thhalv10012117m.g Eutrema salsugineum HOM05D007702 ORTHO05D009736 7.2e-103 377.9 295 74.9
Sp1g37800 Schrenkiella parvula HOM05D007702 ORTHO05D009736 2.8e-99 365.9 300 77.7
A06p02690 Brassica napus HOM05D007702 ORTHO05D009736 6.9e-90 334.7 294 65.6
BcaC08g43279 Brassica carinata HOM05D007702 ORTHO05D009736 5.9e-89 331.6 294 67.3
C06p06290 Brassica napus HOM05D007702 ORTHO05D009736 5.9e-89 331.6 294 67.3
BolC6t35738H Brassica oleracea HOM05D007702 ORTHO05D009736 5.9e-89 331.6 294 67.3
BraA06t23478Z Brassica rapa HOM05D007702 ORTHO05D009736 1.7e-88 330.1 294 60.9
BcaB07g33554 Brassica carinata HOM05D007702 ORTHO05D009736 9.4e-87 324.3 297 61.6
Aa31LG10G3400 Aethionema arabicum HOM05D007702 ORTHO05D009736 1.6e-81 307.0 249 72.7
THA.LOC104817895 Tarenaya hassleriana HOM05D007702 ORTHO05D009736 1.7e-64 250.4 248 62.5
Thecc.06G057000 Theobroma cacao HOM05D007702 ORTHO05D009736 4.4e-52 209.1 227 49.8
Duzib235G0870 Durio zibethinus HOM05D007702 ORTHO05D009736 2.9e-51 206.5 227 49.8
Cpa.g.sc155.12 Carica papaya HOM05D007702 ORTHO05D009736 3.2e-50 203.0 227 49.8
Manes.06G177600 Manihot esculenta HOM05D007702 ORTHO05D009736 2.7e-49 199.9 253 44.3
Cc03_g07590 Coffea canephora HOM05D007702 ORTHO05D009736 4.3e-47 192.6 247 45.7
Haze_08173 Corylus avellana HOM05D007702 ORTHO05D009736 4.3e-47 192.6 242 47.5
DCAR_007958 Daucus carota HOM05D007702 ORTHO05D009736 5.6e-47 192.2 246 45.5
CiPaw.11G097300 Carya illinoinensis HOM05D007702 ORTHO05D009736 7.3e-47 191.8 271 43.2
Sabra08G0002400 Salix brachista HOM05D007702 ORTHO05D009736 1.2e-46 191.0 240 45.4
Potri.008G004800 Populus trichocarpa HOM05D007702 ORTHO05D009736 4.7e-46 189.1 241 49.0
Actinidia21887 Actinidia chinensis HOM05D007702 ORTHO05D009736 6.2e-46 188.7 148 63.5
Gohir.A10G002000 Gossypium hirsutum HOM05D007702 ORTHO05D009736 6.2e-46 188.7 235 46.8
Gohir.D10G002100 Gossypium hirsutum HOM05D007702 ORTHO05D009736 8.0e-46 188.3 131 68.7
Gorai.011G002500 Gossypium raimondii HOM05D007702 ORTHO05D009736 8.0e-46 188.3 131 68.7
Prupe.3G023000 Prunus persica HOM05D007702 ORTHO05D009736 1.4e-45 187.6 235 50.6
Cfa012496 Carpinus fangiana HOM05D007702 ORTHO05D009736 1.8e-45 187.2 236 46.2
MD09G1165300 Malus domestica HOM05D007702 ORTHO05D009736 1.8e-45 187.2 246 44.3
Aa31LG6G10000 Aethionema arabicum HOM05D007702 ORTHO05D009736 2.3e-45 186.8 129 72.1
AUR62001339 Chenopodium quinoa HOM05D007702 ORTHO05D009736 4.0e-45 186.0 237 43.9
Ciclev10032212m.g Citrus clementina HOM05D007702 ORTHO05D009736 5.2e-45 185.7 231 50.2
TAR383G0542 Trochodendron aralioides HOM05D007702 ORTHO05D009736 1.5e-44 184.1 137 66.4
RcHm_v2.0_Chr2g0149381 Rosa chinensis HOM05D007702 ORTHO05D009736 2.0e-44 183.7 222 50.9
EL10Ac7g18156 Beta vulgaris HOM05D007702 ORTHO05D009736 2.6e-44 183.3 259 40.5
Aqoxy7G02739 Aquilegia oxysepala HOM05D007702 ORTHO05D009736 4.4e-44 182.6 229 48.0
COL.COLO4_31154 Corchorus olitorius HOM05D007702 ORTHO05D009736 1.7e-43 180.6 209 48.3
Migut.I01200 Erythranthe guttata HOM05D007702 ORTHO05D009736 1.7e-43 180.6 147 60.5
Nn2g12749 Nelumbo nucifera HOM05D007702 ORTHO05D009736 1.7e-43 180.6 136 66.2
PGR042G2668 Punica granatum HOM05D007702 ORTHO05D009736 2.9e-43 179.9 141 63.1
CSS0020400 Camellia sinensis var. sinensis HOM05D007702 ORTHO05D009736 3.7e-43 179.5 232 46.1
Eucgr.J03180 Eucalyptus grandis HOM05D007702 ORTHO05D009736 6.4e-43 178.7 221 44.3
Ah.08g217790 Amaranthus hybridus HOM05D007702 ORTHO05D009736 1.1e-42 177.9 243 42.8
FAN05G4144 Fragaria x ananassa HOM05D007715 ORTHO05D009760 1.4e-42 177.6 231 56.7
MBI07_g12934_MAGBIO Magnolia biondii HOM05D007702 ORTHO05D009736 1.4e-42 177.6 127 70.9
Nitab4.5_0006053g0030 Nicotiana tabacum HOM05D007702 ORTHO05D009736 1.4e-42 177.6 129 67.4
CANSAT54G1387 Cannabis sativa HOM05D007702 ORTHO05D009736 1.9e-42 177.2 131 64.1
Peaxi162Scf00051g00198 Petunia axillaris HOM05D007702 ORTHO05D009736 2.4e-42 176.8 219 53.4
Sopen01g045260 Solanum pennellii HOM05D007702 ORTHO05D009736 2.4e-42 176.8 228 45.2
FvH4_6g36940 Fragaria vesca HOM05D007702 ORTHO05D009736 3.2e-42 176.4 221 57.5
Solyc01g102860.2 Solanum lycopersicum HOM05D007702 ORTHO05D009736 3.2e-42 176.4 238 44.1
AUR62025666 Chenopodium quinoa HOM05D007702 ORTHO05D009736 4.1e-42 176.0 233 43.8
CDE05G1247 Ceratophyllum demersum HOM05D007702 ORTHO05D009736 5.4e-42 175.6 161 59.0
Nitab4.5_0010634g0010 Nicotiana tabacum HOM05D007702 ORTHO05D009736 5.4e-42 175.6 233 49.8
CANSAT54G2309 Cannabis sativa HOM05D007702 ORTHO05D009736 7.0e-42 175.3 131 63.4
FAN14G5785 Fragaria x ananassa HOM05D007715 ORTHO05D009760 7.0e-42 175.3 232 55.6
Atru.chr1.2666 Acer truncatum HOM05D007702 ORTHO05D009736 2.7e-41 173.3 234 54.7
FAN02G3529 Fragaria x ananassa HOM05D007715 ORTHO05D009760 2.7e-41 173.3 231 54.1
Sc12g0011180 Simmondsia chinensis HOM05D007715 ORTHO05D009760 4.6e-41 172.6 132 63.6
unitig_748.g7485 Utricularia gibba HOM05D007702 ORTHO05D009736 4.6e-41 172.6 217 45.6
PGSC0003DMG400018255 Solanum tuberosum HOM05D007702 ORTHO05D009736 1.7e-40 170.6 131 63.4
Medtr2g101430 Medicago truncatula HOM05D007702 ORTHO05D009736 3.0e-40 169.9 236 53.4
QL12p001257 Quercus lobata HOM05D007702 ORTHO05D009736 5.6e-39 165.6 217 44.2
Ca_00991_v3 Cicer arietinum L. HOM05D007702 ORTHO05D009736 7.3e-39 165.2 131 60.3
Oeu049633.1 Olea europaea HOM05D007702 ORTHO05D009736 9.5e-39 164.9 215 51.2
Psat5g305320 Pisum sativum HOM05D007702 ORTHO05D009736 9.5e-39 164.9 219 42.5
GSVIVG01029550001 Vitis vinifera HOM05D007702 ORTHO05D009736 3.6e-38 162.9 220 45.9
TPR.G39495 Trifolium pratense HOM05D007702 ORTHO05D009736 8.1e-38 161.8 128 63.3
CsaV3_7G033690 Cucumis sativus L. HOM05D007702 ORTHO05D009736 1.1e-37 161.4 219 49.3
arahy.Tifrunner.gnm1.ann1.TT2UX9 Arachis hypogaea HOM05D007702 ORTHO05D009736 2.3e-37 160.2 128 58.6
SGA_v2.0_scaffold71G23985 Striga asiatica HOM05D007702 ORTHO05D009736 5.2e-37 159.1 129 56.6
ClCG09G001650 Citrullus lanatus HOM05D007702 ORTHO05D009736 6.8e-37 158.7 219 42.0
MELO3C024282.2 Cucumis melo HOM05D007702 ORTHO05D009736 2.6e-36 156.8 128 60.2
CAN.G2401.1 Capsicum annuum HOM05D000005 ORTHO05D000012 1.7e-35 154.1 125 60.8
Lsat_1_v5_gn_1_39381 Lactuca sativa HOM05D007702 ORTHO05D009736 2.2e-35 153.7 138 52.9
Aa31LG3G5120 Aethionema arabicum HOM05D007702 ORTHO05D009736 3.7e-35 152.9 113 69.0
ATR1126G014 Amborella trichopoda HOM05D007702 ORTHO05D009736 7.1e-34 148.7 130 57.7
PSO144G0036 Papaver somniferum HOM05D007702 ORTHO05D009736 6.0e-33 145.6 243 43.2
SalBow6G4959 Salvia bowleyana HOM05D007702 ORTHO05D009736 4.3e-31 139.4 112 63.4
PSO423G0097 Papaver somniferum HOM05D007702 ORTHO05D009736 2.1e-30 137.1 240 36.2
ECA236G1927 Erigeron canadensis HOM05D007702 ORTHO05D009736 1.8e-29 134.0 127 52.8
Rhsim08G0250300 Rhododendron simsii HOM05D007702 ORTHO05D009736 2.3e-29 133.7 248 38.7
Os03g0138900 Oryza sativa ssp. japonica HOM05D007702 ORTHO05D009736 6.8e-29 132.1 126 53.2
vmacro18744 Vaccinium macrocarpon HOM05D007702 ORTHO05D009736 2.0e-28 130.6 128 50.0
Mapoly0020s0094 Marchantia polymorpha HOM05D007702 ORTHO05D009736 5.8e-28 129.0 223 37.7
Gorai.011G091300 Gossypium raimondii HOM05D007702 ORTHO05D009736 8.4e-27 125.2 125 55.2
Pp3c5_18880 Physcomitrium patens HOM05D007702 ORTHO05D009736 6.0e-25 119.0 129 46.5
AagrBONN_evm.TU.Sc2ySwM_228.5746 Anthoceros agrestis HOM05D007702 ORTHO05D009736 1.0e-24 118.2 143 44.8
FAN09G0474 Fragaria x ananassa HOM05D007715 ORTHO05D009760 2.3e-24 117.1 98 59.2
SEGI_14624 Sequoiadendron giganteum HOM05D007702 ORTHO05D009736 3.1e-21 106.7 139 43.2
Zm00001eb230260 Zea mays HOM05D007702 ORTHO05D009736 1.2e-20 104.8 112 48.2
EL10Ac3g06847 Beta vulgaris HOM05D000495 ORTHO05D009736 4.4e-20 102.8 129 45.7
AL3G14490 Arabidopsis lyrata HOM05D007702 ORTHO05D009736 9.3e-18 95.1 67 74.6
Aa31sc1417G10 Aethionema arabicum HOM05D007702 ORTHO05D009736 7.3e-15 85.5 81 60.5
FAN07G0391 Fragaria x ananassa HOM05D007702 ORTHO05D009736 1.3e-11 74.7 48 66.7
FAN10G3703 Fragaria x ananassa HOM05D007702 ORTHO05D009736 1.3e-11 74.7 155 44.5
Dinv37777 Davidia involucrata HOM05D000532 ORTHO05D002745 4.9e-11 72.8 35 88.6
FAN02G1843 Fragaria x ananassa HOM05D007702 ORTHO05D009736 5.1e-08 62.8 150 42.7
Actinidia21654 Actinidia chinensis HOM05D007715 ORTHO05D009760 8.7e-08 62.0 44 68.2


User provided reference genes

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