Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR040810 Cardamine hirsuta HOM05D005555 ORTHO05D006923 2.0e-234 815.5 424 100.0
Carub.0001s3974 Capsella rubella HOM05D005555 ORTHO05D006923 1.1e-221 773.1 422 94.3
AL1G58400 Arabidopsis lyrata HOM05D005555 ORTHO05D006923 4.2e-221 771.2 422 94.3
AT1G50710 Arabidopsis thaliana HOM05D005555 ORTHO05D006923 3.6e-220 768.1 422 93.8
Sp1g37550 Schrenkiella parvula HOM05D005555 ORTHO05D006923 1.3e-217 759.6 425 93.4
A06p02920 Brassica napus HOM05D005555 ORTHO05D006923 5.9e-215 750.7 424 92.5
BraA06t23497Z Brassica rapa HOM05D005555 ORTHO05D006923 5.9e-215 750.7 424 92.5
BcaC08g43248 Brassica carinata HOM05D005555 ORTHO05D006923 1.0e-214 750.0 424 92.2
C06p05960 Brassica napus HOM05D005555 ORTHO05D006923 1.0e-214 750.0 424 92.2
BolC6t35709H Brassica oleracea HOM05D005555 ORTHO05D006923 1.0e-214 750.0 424 92.2
Thhalv10011513m.g Eutrema salsugineum HOM05D005555 ORTHO05D006923 5.6e-213 744.2 424 91.5
BcaC08g43250 Brassica carinata HOM05D005555 ORTHO05D006923 9.5e-213 743.4 424 91.0
BcaB02g11175 Brassica carinata HOM05D005555 ORTHO05D006923 5.9e-207 724.2 424 89.4
Aa31LG10G3630 Aethionema arabicum HOM05D005555 ORTHO05D006923 1.3e-201 706.4 420 87.6
BraA05t20906Z Brassica rapa HOM05D005555 ORTHO05D006923 4.9e-201 704.5 425 87.8
A05p19990 Brassica napus HOM05D005555 ORTHO05D006923 6.0e-199 697.6 425 87.8
THA.LOC104817858 Tarenaya hassleriana HOM05D005555 ORTHO05D006923 1.9e-197 692.6 422 85.8
BcaB07g33510 Brassica carinata HOM05D005555 ORTHO05D006923 2.7e-191 672.2 438 83.1
Duzib268G1179 Durio zibethinus HOM05D005555 ORTHO05D006923 3.4e-186 655.2 412 82.5
Gorai.009G438400 Gossypium raimondii HOM05D005555 ORTHO05D006923 1.3e-185 653.3 412 82.5
Eucgr.F03470 Eucalyptus grandis HOM05D005555 ORTHO05D006923 2.4e-184 649.0 428 80.4
TWI39G0347 Tripterygium wilfordii HOM05D005555 ORTHO05D006923 5.4e-184 647.9 427 80.8
GSVIVG01037655001 Vitis vinifera HOM05D005555 ORTHO05D006923 2.7e-183 645.6 429 81.1
CSS0046165 Camellia sinensis var. sinensis HOM05D005555 ORTHO05D006923 3.6e-180 635.2 427 79.9
TAR627G0887 Trochodendron aralioides HOM05D005555 ORTHO05D006923 1.8e-179 632.9 428 79.0
Cpa.g.sc12.303 Carica papaya HOM05D005555 ORTHO05D006923 5.8e-178 627.9 422 78.2
Ciclev10008353m.g Citrus clementina HOM05D005555 ORTHO05D006923 5.8e-178 627.9 423 79.2
Gohir.D05G369700 Gossypium hirsutum HOM05D005555 ORTHO05D006923 7.6e-178 627.5 412 79.9
Dinv22259 Davidia involucrata HOM05D005555 ORTHO05D006923 9.9e-178 627.1 428 79.4
Gohir.A04G016500 Gossypium hirsutum HOM05D005555 ORTHO05D006923 1.3e-177 626.7 412 79.6
CsaV3_7G021840 Cucumis sativus L. HOM05D005555 ORTHO05D006923 1.7e-177 626.3 425 77.6
QL08p010014 Quercus lobata HOM05D005555 ORTHO05D006923 2.9e-177 625.5 424 78.1
Thecc.07G035900 Theobroma cacao HOM05D005555 ORTHO05D006923 4.2e-176 621.7 413 80.1
Sed0005603 Sechium edule HOM05D005555 ORTHO05D006923 9.6e-173 610.5 425 76.0
Manes.15G071400 Manihot esculenta HOM05D005555 ORTHO05D006923 6.2e-172 607.8 425 77.2
Rhsim06G0217300 Rhododendron simsii HOM05D005555 ORTHO05D006923 5.3e-171 604.7 444 74.8
Actinidia35345 Actinidia chinensis HOM05D005555 ORTHO05D006923 1.2e-170 603.6 429 76.0
ECA240G0357 Erigeron canadensis HOM05D005555 ORTHO05D006923 2.9e-169 599.0 413 76.5
CSS0038584 Camellia sinensis var. sinensis HOM05D005555 ORTHO05D006923 3.8e-169 598.6 424 77.1
Nn1g07133 Nelumbo nucifera HOM05D005555 ORTHO05D006923 4.9e-169 598.2 428 75.2
RcHm_v2.0_Chr2g0139231 Rosa chinensis HOM05D005555 ORTHO05D006923 6.4e-169 597.8 426 75.6
Lj6g0008930 Lotus japonicus HOM05D005555 ORTHO05D006923 7.1e-168 594.3 424 74.1
PSO541G4760 Papaver somniferum HOM05D005555 ORTHO05D006923 7.1e-168 594.3 416 75.7
arahy.Tifrunner.gnm1.ann1.P3VUIG Arachis hypogaea HOM05D005555 ORTHO05D006923 1.2e-167 593.6 425 74.1
CiPaw.12G130100 Carya illinoinensis HOM05D005555 ORTHO05D006923 2.1e-167 592.8 422 75.4
arahy.Tifrunner.gnm1.ann1.UR7PB1 Arachis hypogaea HOM05D005555 ORTHO05D006923 2.7e-167 592.4 425 74.1
CANSAT11G1088 Cannabis sativa HOM05D005555 ORTHO05D006923 3.5e-167 592.0 424 76.4
Gorai.009G438500 Gossypium raimondii HOM05D005555 ORTHO05D006923 3.5e-167 592.0 412 76.7
MSTRG.6923 Avicennia marina HOM05D005555 ORTHO05D006923 6.0e-167 591.3 422 75.1
arahy.Tifrunner.gnm1.ann1.QY89IE Arachis hypogaea HOM05D005555 ORTHO05D006923 7.9e-167 590.9 425 73.9
Aqoxy1G02148 Aquilegia oxysepala HOM05D005555 ORTHO05D006923 3.9e-166 588.6 419 75.7
CiPaw.11G190000 Carya illinoinensis HOM05D005555 ORTHO05D006923 5.6e-165 584.7 423 74.7
Hund15555 Selenicereus undatus HOM05D005555 ORTHO05D006923 5.6e-165 584.7 424 73.6
Lj8C169T24 Lonicera japonica HOM05D005555 ORTHO05D006923 7.4e-165 584.3 453 71.5
Solyc12g005050.2 Solanum lycopersicum HOM05D005555 ORTHO05D006923 9.6e-165 583.9 412 74.0
Migut.M01757 Erythranthe guttata HOM05D005555 ORTHO05D006923 2.1e-164 582.8 421 73.4
ClCG09G010820 Citrullus lanatus HOM05D005555 ORTHO05D006923 3.7e-164 582.0 469 68.7
Prupe.3G065100 Prunus persica HOM05D005555 ORTHO05D006923 1.1e-163 580.5 428 74.3
FAN14G2902 Fragaria x ananassa HOM05D005555 ORTHO05D006923 1.8e-163 579.7 426 73.2
Lalb_Chr20g0113831 Lupinus albus HOM05D005555 ORTHO05D006923 2.4e-163 579.3 425 72.7
FAN05G3309 Fragaria x ananassa HOM05D005555 ORTHO05D006923 5.3e-163 578.2 425 72.7
Sopen12g001050 Solanum pennellii HOM05D005555 ORTHO05D006923 5.3e-163 578.2 412 73.3
Nitab4.5_0008473g0010 Nicotiana tabacum HOM05D005555 ORTHO05D006923 4.5e-162 575.1 419 72.8
PGSC0003DMG400027869 Solanum tuberosum HOM05D005555 ORTHO05D006923 4.5e-162 575.1 418 72.5
MELO3C013162.2 Cucumis melo HOM05D005555 ORTHO05D006923 5.8e-162 574.7 436 72.2
Atru.chr2.3417 Acer truncatum HOM05D005555 ORTHO05D006923 9.9e-162 573.9 424 73.3
TPR.G33802 Trifolium pratense HOM05D005555 ORTHO05D006923 9.9e-162 573.9 434 72.1
Glyma.08G316800 Glycine max HOM05D005555 ORTHO05D006923 1.3e-161 573.5 425 72.9
PGR031G0129 Punica granatum HOM05D005555 ORTHO05D006923 1.3e-161 573.5 429 73.9
Psat5g178680 Pisum sativum HOM05D005555 ORTHO05D006923 1.7e-161 573.2 425 71.8
PSO675G4173 Papaver somniferum HOM05D005555 ORTHO05D006923 4.9e-161 571.6 416 73.3
VMungo0540G1244 Vigna mungo HOM05D005555 ORTHO05D006923 8.4e-161 570.9 427 71.7
Medtr3g052180 Medicago truncatula HOM05D005555 ORTHO05D006923 1.1e-160 570.5 425 72.2
SGA_v2.0_scaffold172G39000 Striga asiatica HOM05D005555 ORTHO05D006923 1.1e-160 570.5 425 72.9
DCAR_016709 Daucus carota HOM05D005555 ORTHO05D006923 4.2e-160 568.5 418 73.9
EL10Ac2g03146 Beta vulgaris HOM05D005555 ORTHO05D006923 5.5e-160 568.2 441 71.2
Cc05_g13620 Coffea canephora HOM05D005555 ORTHO05D006923 5.5e-160 568.2 420 72.6
MD17G1190200 Malus domestica HOM05D005555 ORTHO05D006923 2.1e-159 566.2 427 72.8
CSS0007038 Camellia sinensis var. sinensis HOM05D005555 ORTHO05D006923 4.6e-159 565.1 443 71.8
Lsat_1_v5_gn_2_47780 Lactuca sativa HOM05D005555 ORTHO05D006923 4.6e-159 565.1 414 73.4
Glyma.18G096300 Glycine max HOM05D005555 ORTHO05D006923 7.9e-159 564.3 426 71.6
HanXRQChr03g0076481 Helianthus annuus HOM05D005555 ORTHO05D006923 7.9e-159 564.3 401 75.6
Cc07_g19690 Coffea canephora HOM05D005555 ORTHO05D006923 1.0e-158 563.9 419 72.6
Potri.011G090800 Populus trichocarpa HOM05D005555 ORTHO05D006923 2.3e-158 562.8 426 73.0
Medtr5g049170 Medicago truncatula HOM05D005555 ORTHO05D006923 6.7e-158 561.2 425 71.3
CAN.G542.3 Capsicum annuum HOM05D005555 ORTHO05D006923 2.5e-157 559.3 412 71.4
Phvul.006G044000 Phaseolus vulgaris HOM05D005555 ORTHO05D006923 3.3e-157 558.9 426 70.9
Nn1g03520 Nelumbo nucifera HOM05D005555 ORTHO05D006923 3.7e-156 555.4 427 70.0
Ah.10g032310 Amaranthus hybridus HOM05D005555 ORTHO05D006923 2.4e-155 552.7 424 72.6
arahy.Tifrunner.gnm1.ann1.GVQ212 Arachis hypogaea HOM05D005555 ORTHO05D006923 2.6e-154 549.3 460 66.5
DCAR_001508 Daucus carota HOM05D005555 ORTHO05D006923 7.6e-154 547.7 418 72.2
Sc03g0008570 Simmondsia chinensis HOM05D005555 ORTHO05D006923 1.1e-152 543.9 375 77.3
CDE04G3207 Ceratophyllum demersum HOM05D005555 ORTHO05D006923 1.9e-152 543.1 423 68.6
FAN02G4472 Fragaria x ananassa HOM05D005555 ORTHO05D006923 4.6e-151 538.5 425 68.9
Nitab4.5_0000981g0050 Nicotiana tabacum HOM05D005555 ORTHO05D006923 3.3e-149 532.3 458 65.7
MD09G1208700 Malus domestica HOM05D005555 ORTHO05D006923 8.2e-148 527.7 419 69.2
unitig_744.g24404 Utricularia gibba HOM05D005555 ORTHO05D006923 1.2e-146 523.9 414 68.4
MBI05_g12021_MAGBIO Magnolia biondii HOM05D005555 ORTHO05D006923 2.2e-145 519.6 425 68.9
ATR0752G192 Amborella trichopoda HOM05D005555 ORTHO05D006923 2.5e-144 516.2 427 65.3
Peaxi162Scf00660g00816 Petunia axillaris HOM05D005555 ORTHO05D006923 2.5e-144 516.2 381 71.9
Ca_14731_v3 Cicer arietinum L. HOM05D005555 ORTHO05D006923 7.2e-144 514.6 508 58.7
AUR62018195 Chenopodium quinoa HOM05D005555 ORTHO05D006923 9.4e-144 514.2 425 69.9
Sabra11G0086200 Salix brachista HOM05D005555 ORTHO05D006923 1.0e-142 510.8 426 68.5
vmacro11723 Vaccinium macrocarpon HOM05D005555 ORTHO05D006923 5.1e-142 508.4 511 60.7
MD03G1200100 Malus domestica HOM05D005555 ORTHO05D006923 3.3e-141 505.8 429 65.5
HanXRQChr05g0134351 Helianthus annuus HOM05D005555 ORTHO05D006923 6.3e-140 501.5 423 67.6
Gohir.D05G369900 Gossypium hirsutum HOM05D005555 ORTHO05D006923 2.0e-138 496.5 411 68.1
Haze_09680 Corylus avellana HOM05D005555 ORTHO05D006923 1.6e-135 486.9 488 61.5
Cfa020338 Carpinus fangiana HOM05D005555 ORTHO05D006923 7.9e-135 484.6 385 72.2
HPP92_010410 Vanilla planifolia HOM05D005555 ORTHO05D006923 3.3e-133 479.2 414 65.0
Dinv40759 Davidia involucrata HOM05D005555 ORTHO05D006923 7.4e-133 478.0 379 73.1
Gohir.D05G370300 Gossypium hirsutum HOM05D005555 ORTHO05D006923 1.3e-132 477.2 369 71.5
RcHm_v2.0_Chr5g0039771 Rosa chinensis HOM05D005555 ORTHO05D006923 2.0e-130 469.9 427 62.1
FvH4_3g22760 Fragaria vesca HOM05D005555 ORTHO05D006923 6.7e-126 454.9 427 61.4
SMO352G0045 Selaginella moellendorffii HOM05D005555 ORTHO05D006923 4.8e-124 448.7 403 61.0
Mapoly0032s0110 Marchantia polymorpha HOM05D005555 ORTHO05D006923 1.6e-122 443.7 442 56.3
Prupe.4G214200 Prunus persica HOM05D005555 ORTHO05D006923 8.5e-121 438.0 361 66.5
Zm00001eb230170 Zea mays HOM05D005555 ORTHO05D006923 3.3e-117 426.0 431 58.0
Sed0020027 Sechium edule HOM05D005555 ORTHO05D006923 1.8e-115 420.2 391 62.7
FAN16G3656 Fragaria x ananassa HOM05D005555 ORTHO05D006923 1.0e-113 414.5 411 59.1
FvH4_6g31880 Fragaria vesca HOM05D005555 ORTHO05D006923 1.3e-113 414.1 315 71.7
Pp3c17_11280 Physcomitrium patens HOM05D005555 ORTHO05D006923 1.7e-113 413.7 424 55.4
arahy.Tifrunner.gnm1.ann1.92YVPD Arachis hypogaea HOM05D005555 ORTHO05D006923 2.1e-111 406.8 426 55.9
TPR.G5778 Trifolium pratense HOM05D005555 ORTHO05D006923 1.0e-110 404.4 342 64.6
AUR62038682 Chenopodium quinoa HOM05D005555 ORTHO05D006923 2.8e-108 396.4 423 57.7
arahy.Tifrunner.gnm1.ann1.21WID0 Arachis hypogaea HOM05D005555 ORTHO05D006923 5.7e-101 372.1 434 51.8
FAN25G0297 Fragaria x ananassa HOM05D005555 ORTHO05D006923 1.1e-96 357.8 368 57.9
CBR_g19746 Chara braunii HOM05D005555 ORTHO05D006923 1.1e-67 261.5 381 40.9
Medtr5g049150 Medicago truncatula HOM05D005555 ORTHO05D006923 1.2e-66 258.1 211 67.8
CBR_g6714 Chara braunii HOM05D005555 ORTHO05D006923 1.3e-60 238.0 420 36.4
Os02g0119100 Oryza sativa ssp. japonica HOM05D005555 ORTHO05D006923 1.8e-33 147.9 201 50.2
TPR.G5733 Trifolium pratense HOM05D005555 ORTHO05D006923 7.7e-29 132.5 84 78.6
Hma1.2p1_0206F.1_g087650 Hydrangea macrophylla HOM05D005555 ORTHO05D006923 2.0e-16 91.3 43 97.7
Hma1.2p1_0545F.1_g176020 Hydrangea macrophylla HOM05D005555 ORTHO05D006923 2.0e-16 91.3 43 97.7
Lsat_1_v5_gn_9_94361 Lactuca sativa HOM05D005555 ORTHO05D006923 7.4e-16 89.4 56 76.8
Actinidia13832 Actinidia chinensis HOM05D005555 ORTHO05D006923 1.7e-07 61.6 53 66.0


User provided reference genes

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