Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR040460 Cardamine hirsuta HOM05D005532 ORTHO05D006873 6.8e-145 517.3 262 100.0
AT1G50450 Arabidopsis thaliana HOM05D005532 ORTHO05D006873 8.4e-127 457.2 277 85.2
Sp1g37280 Schrenkiella parvula HOM05D005532 ORTHO05D006873 1.2e-125 453.4 277 84.1
AL1G58090 Arabidopsis lyrata HOM05D005532 ORTHO05D006873 2.1e-125 452.6 277 84.5
Carub.0001s3953 Capsella rubella HOM05D005532 ORTHO05D006873 1.0e-124 450.3 277 83.0
Thhalv10011503m.g Eutrema salsugineum HOM05D005532 ORTHO05D006873 5.1e-124 448.0 277 84.1
BcaB07g33482 Brassica carinata HOM05D005532 ORTHO05D006873 1.8e-121 439.5 277 81.2
BcaC08g43214 Brassica carinata HOM05D005532 ORTHO05D006873 1.8e-121 439.5 277 81.2
THA.LOC104821584 Tarenaya hassleriana HOM05D005532 ORTHO05D006873 2.3e-116 422.5 277 75.8
A06p03120 Brassica napus HOM05D005532 ORTHO05D006873 5.1e-116 421.4 277 79.4
BraA06t23525Z Brassica rapa HOM05D005532 ORTHO05D006873 5.1e-116 421.4 277 79.4
C06p05640 Brassica napus HOM05D005532 ORTHO05D006873 5.6e-115 417.9 277 78.7
BolC6t35671H Brassica oleracea HOM05D005532 ORTHO05D006873 5.6e-115 417.9 277 78.7
Atru.chr3.2637 Acer truncatum HOM05D005532 ORTHO05D006873 9.6e-115 417.2 277 73.6
GSVIVG01031546001 Vitis vinifera HOM05D005532 ORTHO05D006873 1.8e-113 412.9 277 73.6
Actinidia23981 Actinidia chinensis HOM05D005532 ORTHO05D006873 2.6e-112 409.1 277 72.6
Lalb_Chr19g0139721 Lupinus albus HOM05D005532 ORTHO05D006873 3.4e-112 408.7 277 74.4
COL.COLO4_36473 Corchorus olitorius HOM05D005532 ORTHO05D006873 1.3e-111 406.8 277 72.9
Lj3g0021729 Lotus japonicus HOM05D005532 ORTHO05D006873 1.7e-111 406.4 277 72.2
CSS0007885 Camellia sinensis var. sinensis HOM05D005532 ORTHO05D006873 2.9e-111 405.6 277 72.2
HanXRQChr02g0051521 Helianthus annuus HOM05D005532 ORTHO05D006873 4.9e-111 404.8 277 71.5
Manes.14G005300 Manihot esculenta HOM05D005532 ORTHO05D006873 4.9e-111 404.8 277 71.5
Actinidia11667 Actinidia chinensis HOM05D005532 ORTHO05D006873 8.4e-111 404.1 277 71.5
Medtr4g076230 Medicago truncatula HOM05D005532 ORTHO05D006873 1.1e-110 403.7 279 73.8
Potri.009G050100 Populus trichocarpa HOM05D005532 ORTHO05D006873 1.4e-110 403.3 277 71.5
Nn7g36397 Nelumbo nucifera HOM05D005532 ORTHO05D006873 1.9e-110 402.9 277 71.8
EL10Ac4g10189 Beta vulgaris HOM05D005532 ORTHO05D006873 2.5e-110 402.5 277 74.4
Dinv36220 Davidia involucrata HOM05D005532 ORTHO05D006873 4.2e-110 401.7 277 72.6
TAR636G1137 Trochodendron aralioides HOM05D005532 ORTHO05D006873 4.2e-110 401.7 277 71.5
MD11G1188300 Malus domestica HOM05D005532 ORTHO05D006873 5.5e-110 401.4 277 71.5
Aqoxy2G00249 Aquilegia oxysepala HOM05D005532 ORTHO05D006873 7.1e-110 401.0 277 72.6
HanXRQChr13g0401441 Helianthus annuus HOM05D005532 ORTHO05D006873 7.1e-110 401.0 277 70.8
TWI60G0905 Tripterygium wilfordii HOM05D005532 ORTHO05D006873 7.1e-110 401.0 277 71.8
Cpa.g.sc892.3 Carica papaya HOM05D005532 ORTHO05D006873 9.3e-110 400.6 277 71.8
Thecc.09G240600 Theobroma cacao HOM05D005532 ORTHO05D006873 9.3e-110 400.6 277 71.5
Cfa009820 Carpinus fangiana HOM05D005532 ORTHO05D006873 1.6e-109 399.8 277 70.4
Hund07456 Selenicereus undatus HOM05D005532 ORTHO05D006873 2.7e-109 399.1 277 70.8
TPR.G22568 Trifolium pratense HOM05D005532 ORTHO05D006873 2.7e-109 399.1 277 72.9
Aa31LG10G3830 Aethionema arabicum HOM05D005532 ORTHO05D006873 3.5e-109 398.7 279 76.0
CiPaw.13G154000 Carya illinoinensis HOM05D005532 ORTHO05D006873 3.5e-109 398.7 277 70.4
FvH4_3g28350 Fragaria vesca HOM05D005532 ORTHO05D006873 3.5e-109 398.7 277 72.6
FAN16G3415 Fragaria x ananassa HOM05D005532 ORTHO05D006873 3.5e-109 398.7 277 72.6
FAN25G0557 Fragaria x ananassa HOM05D005532 ORTHO05D006873 3.5e-109 398.7 277 72.6
Gorai.001G136900 Gossypium raimondii HOM05D005532 ORTHO05D006873 1.0e-108 397.1 277 71.5
RcHm_v2.0_Chr5g0053381 Rosa chinensis HOM05D005532 ORTHO05D006873 1.8e-108 396.4 277 71.1
Duzib168G1386 Durio zibethinus HOM05D005532 ORTHO05D006873 2.3e-108 396.0 277 71.1
Gohir.D07G126700 Gossypium hirsutum HOM05D005532 ORTHO05D006873 2.3e-108 396.0 277 71.1
PGR119G0320 Punica granatum HOM05D005532 ORTHO05D006873 3.0e-108 395.6 277 69.3
Eucgr.J00735 Eucalyptus grandis HOM05D005532 ORTHO05D006873 5.1e-108 394.8 277 71.1
arahy.Tifrunner.gnm1.ann1.7Y4SN4 Arachis hypogaea HOM05D005532 ORTHO05D006873 6.7e-108 394.4 278 72.3
AUR62039851 Chenopodium quinoa HOM05D005532 ORTHO05D006873 6.7e-108 394.4 277 70.8
Glyma.12G021500 Glycine max HOM05D005532 ORTHO05D006873 8.7e-108 394.0 277 71.5
VMungo1127G1594 Vigna mungo HOM05D005532 ORTHO05D006873 1.1e-107 393.7 277 71.8
Ciclev10015321m.g Citrus clementina HOM05D005532 ORTHO05D006873 2.5e-107 392.5 277 70.4
arahy.Tifrunner.gnm1.ann1.3FY9NR Arachis hypogaea HOM05D005532 ORTHO05D006873 3.3e-107 392.1 278 71.6
Migut.D00633 Erythranthe guttata HOM05D005532 ORTHO05D006873 3.3e-107 392.1 277 71.5
Hma1.2p1_2169F.1_g315920 Hydrangea macrophylla HOM05D005532 ORTHO05D006873 3.3e-107 392.1 287 69.3
ECA233G0258 Erigeron canadensis HOM05D005532 ORTHO05D006873 4.3e-107 391.7 277 69.7
MELO3C014575.2 Cucumis melo HOM05D005532 ORTHO05D006873 7.4e-107 391.0 276 69.6
Sed0019503 Sechium edule HOM05D005532 ORTHO05D006873 7.4e-107 391.0 276 69.6
CANSAT54G2729 Cannabis sativa HOM05D005532 ORTHO05D006873 1.3e-106 390.2 277 69.3
FAN21G2390 Fragaria x ananassa HOM05D005532 ORTHO05D006873 1.3e-106 390.2 277 70.8
Lsat_1_v5_gn_6_26061 Lactuca sativa HOM05D005532 ORTHO05D006873 1.3e-106 390.2 277 68.2
Prupe.4G256000 Prunus persica HOM05D005532 ORTHO05D006873 1.3e-106 390.2 277 70.0
AUR62000162 Chenopodium quinoa HOM05D005532 ORTHO05D006873 4.8e-106 388.3 277 70.4
AUR62039849 Chenopodium quinoa HOM05D005532 ORTHO05D006873 1.8e-105 386.3 244 77.5
Oeu043291.1 Olea europaea HOM05D005532 ORTHO05D006873 1.8e-105 386.3 277 70.0
PSO339G2797 Papaver somniferum HOM05D005532 ORTHO05D006873 4.0e-105 385.2 277 70.4
Phvul.011G078100 Phaseolus vulgaris HOM05D005532 ORTHO05D006873 5.3e-105 384.8 277 70.4
Cc01_g02130 Coffea canephora HOM05D005532 ORTHO05D006873 1.2e-104 383.6 277 71.1
PSO384G4693 Papaver somniferum HOM05D005532 ORTHO05D006873 1.2e-104 383.6 277 70.0
Lj1A319T38 Lonicera japonica HOM05D005532 ORTHO05D006873 1.5e-104 383.3 315 63.2
SGA_v2.0_scaffold29G12299 Striga asiatica HOM05D005532 ORTHO05D006873 3.4e-104 382.1 277 68.6
RhsimUnG0131400 Rhododendron simsii HOM05D005532 ORTHO05D006873 7.6e-104 380.9 288 68.8
Solyc11g065240.2 Solanum lycopersicum HOM05D005532 ORTHO05D006873 7.6e-104 380.9 277 69.7
CAN.G870.1 Capsicum annuum HOM05D005532 ORTHO05D006873 1.0e-103 380.6 277 69.3
Psat7g179480 Pisum sativum HOM05D005532 ORTHO05D006873 1.0e-103 380.6 311 65.0
PGSC0003DMG400038188 Solanum tuberosum HOM05D005532 ORTHO05D006873 2.9e-103 379.0 277 69.0
Sopen11g024960 Solanum pennellii HOM05D005532 ORTHO05D006873 6.5e-103 377.9 277 69.0
Rhsim01G0193400 Rhododendron simsii HOM05D005532 ORTHO05D006873 1.9e-102 376.3 299 65.6
Nitab4.5_0011829g0040 Nicotiana tabacum HOM05D005532 ORTHO05D006873 3.2e-102 375.6 277 68.6
Zm00001eb093270 Zea mays HOM05D005532 ORTHO05D006873 6.0e-101 371.3 277 65.7
Os12g0137200 Oryza sativa ssp. japonica HOM05D005532 ORTHO05D006873 7.9e-101 370.9 277 64.6
Haze_23183 Corylus avellana HOM05D005532 ORTHO05D006873 1.0e-100 370.5 330 59.1
Aa31LG10G3840 Aethionema arabicum HOM05D005532 ORTHO05D006873 1.3e-100 370.2 277 66.4
Sabra09G0036700 Salix brachista HOM05D005532 ORTHO05D006873 5.1e-100 368.2 244 73.4
unitig_52.g16880 Utricularia gibba HOM05D005532 ORTHO05D006873 6.7e-100 367.9 277 67.1
HPP92_011292 Vanilla planifolia HOM05D005532 ORTHO05D006873 2.5e-99 365.9 277 66.4
Glyma.11G095400 Glycine max HOM05D005532 ORTHO05D006873 1.3e-98 363.6 254 72.4
HPP92_011271 Vanilla planifolia HOM05D005532 ORTHO05D006873 2.2e-98 362.8 277 66.1
CDE04G2597 Ceratophyllum demersum HOM05D005532 ORTHO05D006873 4.5e-96 355.1 276 62.3
vmacro14267 Vaccinium macrocarpon HOM05D005532 ORTHO05D006873 7.7e-96 354.4 336 58.3
Hund07457 Selenicereus undatus HOM05D005532 ORTHO05D006873 8.5e-95 350.9 244 70.5
ClCG02G023050 Citrullus lanatus HOM05D005532 ORTHO05D006873 1.9e-94 349.7 309 59.9
Nitab4.5_0005230g0080 Nicotiana tabacum HOM05D005532 ORTHO05D006873 3.6e-93 345.5 262 66.0
arahy.Tifrunner.gnm1.ann1.PT8LN6 Arachis hypogaea HOM05D005532 ORTHO05D006873 3.9e-92 342.0 278 61.9
DCAR_023774 Daucus carota HOM05D005532 ORTHO05D006873 4.1e-89 332.0 234 70.5
unitig_62.g23891 Utricularia gibba HOM05D005532 ORTHO05D006873 2.0e-88 329.7 280 60.0
Lsat_1_v5_gn_6_26080 Lactuca sativa HOM05D005532 ORTHO05D006873 3.4e-88 328.9 277 58.8
Gohir.A07G122800 Gossypium hirsutum HOM05D005532 ORTHO05D006873 1.0e-87 327.4 201 76.6
QL01p018283 Quercus lobata HOM05D005532 ORTHO05D006873 2.9e-87 325.9 202 76.7
Haze_23184 Corylus avellana HOM05D005532 ORTHO05D006873 9.4e-86 320.9 276 60.1
Mapoly0066s0102 Marchantia polymorpha HOM05D005532 ORTHO05D006873 2.7e-85 319.3 278 57.9
AagrBONN_evm.TU.Sc2ySwM_117.1967 Anthoceros agrestis HOM05D005532 ORTHO05D006873 2.3e-84 316.2 278 57.6
Peaxi162Scf00004g00378 Petunia axillaris HOM05D005532 ORTHO05D006873 7.4e-83 311.2 214 69.6
Sc09g0000860 Simmondsia chinensis HOM05D005532 ORTHO05D006873 1.7e-79 300.1 201 72.6
ATR0721G047 Amborella trichopoda HOM05D005532 ORTHO05D006873 5.2e-76 288.5 202 68.8
Ah.04g162030 Amaranthus hybridus HOM05D005532 ORTHO05D006873 2.6e-72 276.2 277 55.6
SMO367G1041 Selaginella moellendorffii HOM05D005532 ORTHO05D006873 1.3e-71 273.9 276 51.8
Sc09g0000870 Simmondsia chinensis HOM05D005532 ORTHO05D006873 6.5e-71 271.6 169 76.9
CsaV3_6G039150 Cucumis sativus L. HOM05D005532 ORTHO05D006873 7.2e-70 268.1 178 74.2
MBI05_g22559_MAGBIO Magnolia biondii HOM05D005532 ORTHO05D006873 4.7e-69 265.4 165 74.5
Pp3c19_6050 Physcomitrium patens HOM05D005532 ORTHO05D006873 2.2e-66 256.5 214 58.9
Cre16.g666050 Chlamydomonas reinhardtii HOM05D005532 ORTHO05D006873 2.7e-61 239.6 288 46.2
SGA_v2.0_scaffold29G12269 Striga asiatica HOM05D005532 ORTHO05D006873 2.0e-56 223.4 214 51.9
MCO10G311 Micromonas commoda HOM05D005532 ORTHO05D006873 1.4e-52 210.7 277 42.2
Migut.D00646 Erythranthe guttata HOM05D005532 ORTHO05D006873 1.6e-45 187.2 155 56.1
CBR_g3868 Chara braunii HOM05D000019 ORTHO05D000048 5.8e-43 178.7 167 54.5
arahy.Tifrunner.gnm1.ann1.MM015B Arachis hypogaea HOM05D005532 ORTHO05D006873 4.9e-42 175.6 151 58.3
CsaV3_6G039160 Cucumis sativus L. HOM05D005532 ORTHO05D006873 3.1e-28 129.8 110 60.0
CSS0040461 Camellia sinensis var. sinensis HOM05D005532 ORTHO05D006873 5.1e-23 112.5 102 57.8
PRCOL_00003498 Prasinoderma coloniale HOM05D005532 ORTHO05D006873 4.3e-22 109.4 272 29.8
arahy.Tifrunner.gnm1.ann1.E0YEAW Arachis hypogaea HOM05D005532 ORTHO05D006873 1.4e-20 104.4 119 50.4
SEGI_35247 Sequoiadendron giganteum HOM05D005532 ORTHO05D006873 9.9e-19 98.2 64 65.6
PRCOL_00002357 Prasinoderma coloniale HOM05D005532 ORTHO05D006873 8.4e-18 95.1 297 29.0
HanXRQChr09g0270661 Helianthus annuus HOM05D000715 ORTHO05D000024 1.3e-13 81.3 77 54.5
SEGI_01123 Sequoiadendron giganteum HOM05D005532 ORTHO05D006873 6.9e-12 75.5 69 59.4
arahy.Tifrunner.gnm1.ann1.C2XCQ2 Arachis hypogaea HOM05D005532 ORTHO05D006873 5.8e-11 72.4 43 76.7
SalBow6G6953 Salvia bowleyana HOM05D005532 ORTHO05D006873 4.6e-08 62.8 47 66.0
Ciclev10017011m.g Citrus clementina HOM05D005532 ORTHO05D006873 3.0e-07 60.1 43 65.1
RhsimUnG0131100 Rhododendron simsii HOM05D005532 ORTHO05D000282 3.9e-07 59.7 42 64.3
GSVIVG01003967001 Vitis vinifera HOM05D003363 ORTHO05D003952 7.3e-06 55.5 45 57.8


User provided reference genes

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