Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR040010 Cardamine hirsuta HOM05D007571 ORTHO05D009439 2.3e-38 161.8 83 100.0
AL1G57530 Arabidopsis lyrata HOM05D007571 ORTHO05D009439 8.5e-25 116.7 83 74.7
AT1G49975 Arabidopsis thaliana HOM05D007571 ORTHO05D009439 8.5e-25 116.7 83 74.7
Thhalv10011862m.g Eutrema salsugineum HOM05D007571 ORTHO05D009439 1.2e-23 112.8 83 71.1
BcaC08g43171 Brassica carinata HOM05D007571 ORTHO05D009439 1.6e-23 112.5 64 85.9
A06p03470 Brassica napus HOM05D007571 ORTHO05D009439 1.6e-23 112.5 64 85.9
C06p04720 Brassica napus HOM05D007571 ORTHO05D009439 1.6e-23 112.5 64 85.9
BraA06t23555Z Brassica rapa HOM05D007571 ORTHO05D009439 1.6e-23 112.5 64 85.9
Carub.0001s3916 Capsella rubella HOM05D007571 ORTHO05D009439 2.7e-23 111.7 68 79.4
BcaB07g33447 Brassica carinata HOM05D007571 ORTHO05D009439 3.6e-23 111.3 64 84.4
Sp1g36830 Schrenkiella parvula HOM05D007571 ORTHO05D009439 8.0e-23 110.2 68 79.4
Ciclev10029547m.g Citrus clementina HOM05D007571 ORTHO05D009439 5.2e-22 107.5 67 74.6
Thecc.02G118900 Theobroma cacao HOM05D007571 ORTHO05D009439 8.8e-22 106.7 65 78.5
COL.COLO4_32496 Corchorus olitorius HOM05D007571 ORTHO05D009439 1.5e-21 105.9 67 74.6
THA.LOC104825387 Tarenaya hassleriana HOM05D007571 ORTHO05D009439 2.6e-21 105.1 79 68.4
QL11p029955 Quercus lobata HOM05D007571 ORTHO05D009439 5.7e-21 104.0 65 76.9
Duzib052G0547 Durio zibethinus HOM05D007571 ORTHO05D009439 9.7e-21 103.2 65 73.8
vmacro19538 Vaccinium macrocarpon HOM05D007571 ORTHO05D009439 9.7e-21 103.2 67 77.6
Potri.001G292000 Populus trichocarpa HOM05D007571 ORTHO05D009439 1.7e-20 102.4 64 75.0
PGR042G0328 Punica granatum HOM05D007571 ORTHO05D009439 1.7e-20 102.4 65 73.8
Rhsim05G0092500 Rhododendron simsii HOM05D007571 ORTHO05D009439 2.8e-20 101.7 65 75.4
TWI59G0511 Tripterygium wilfordii HOM05D007571 ORTHO05D009439 3.7e-20 101.3 65 72.3
Eucgr.G01203 Eucalyptus grandis HOM05D007571 ORTHO05D009439 4.8e-20 100.9 65 76.9
Gohir.A12G018900 Gossypium hirsutum HOM05D007571 ORTHO05D009439 4.8e-20 100.9 65 70.8
Gohir.D12G019350 Gossypium hirsutum HOM05D007571 ORTHO05D009439 4.8e-20 100.9 65 70.8
Aqoxy6G02559 Aquilegia oxysepala HOM05D007571 ORTHO05D009439 1.1e-19 99.8 67 71.6
CSS0048413 Camellia sinensis var. sinensis HOM05D007571 ORTHO05D009439 1.4e-19 99.4 67 74.6
GSVIVG01037807001 Vitis vinifera HOM05D007571 ORTHO05D009439 1.4e-19 99.4 65 78.5
BolC6t35600H Brassica oleracea HOM05D007571 ORTHO05D009439 3.1e-19 98.2 95 58.9
Actinidia04391 Actinidia chinensis HOM05D007571 ORTHO05D009439 5.3e-19 97.4 65 73.8
Medtr1g106075 Medicago truncatula HOM05D007571 ORTHO05D009439 5.3e-19 97.4 65 70.8
Sc05g0005590 Simmondsia chinensis HOM05D007571 ORTHO05D009439 5.3e-19 97.4 65 72.3
Sed0007395 Sechium edule HOM05D007571 ORTHO05D009439 7.0e-19 97.1 65 75.4
Actinidia27996 Actinidia chinensis HOM05D007571 ORTHO05D009439 1.6e-18 95.9 65 72.3
Haze_10272 Corylus avellana HOM05D007571 ORTHO05D009439 2.0e-18 95.5 67 71.6
MELO3C018528.2 Cucumis melo HOM05D007571 ORTHO05D009439 2.7e-18 95.1 65 73.8
Atru.chr5.2324 Acer truncatum HOM05D007571 ORTHO05D009439 4.5e-18 94.4 67 64.2
CANSAT25G0272 Cannabis sativa HOM05D007571 ORTHO05D009439 4.5e-18 94.4 67 67.2
CANSAT25G2750 Cannabis sativa HOM05D007571 ORTHO05D009439 4.5e-18 94.4 67 67.2
CAN.G1433.5 Capsicum annuum HOM05D007571 ORTHO05D009439 5.9e-18 94.0 67 67.2
CDE04G1832 Ceratophyllum demersum HOM05D007571 ORTHO05D009439 5.9e-18 94.0 68 66.2
TPR.G21146 Trifolium pratense HOM05D007571 ORTHO05D009439 5.9e-18 94.0 65 66.2
CsaV3_7G007730 Cucumis sativus L. HOM05D007571 ORTHO05D009439 1.0e-17 93.2 65 72.3
TAR628G1270 Trochodendron aralioides HOM05D007571 ORTHO05D009439 1.0e-17 93.2 75 65.3
MD10G1108300 Malus domestica HOM05D007571 ORTHO05D009439 1.7e-17 92.4 67 68.7
Oeu024805.1 Olea europaea HOM05D007571 ORTHO05D009439 1.7e-17 92.4 67 68.7
Prupe.8G147200 Prunus persica HOM05D007571 ORTHO05D009439 1.7e-17 92.4 67 68.7
Dinv15820 Davidia involucrata HOM05D007571 ORTHO05D009439 3.8e-17 91.3 62 75.8
MBI16_g39621_MAGBIO Magnolia biondii HOM05D007571 ORTHO05D009439 3.8e-17 91.3 63 71.4
MBI16_g43666_MAGBIO Magnolia biondii HOM05D007571 ORTHO05D009439 3.8e-17 91.3 63 71.4
Medtr3g008630 Medicago truncatula HOM05D007571 ORTHO05D009439 3.8e-17 91.3 65 66.2
EL10Ac9g22184 Beta vulgaris HOM05D007571 ORTHO05D009439 5.0e-17 90.9 67 64.2
Hund06510 Selenicereus undatus HOM05D007571 ORTHO05D009439 5.0e-17 90.9 72 59.7
Lsat_1_v5_gn_2_105800 Lactuca sativa HOM05D007571 ORTHO05D009439 6.5e-17 90.5 67 68.7
Solyc05g150152.1 Solanum lycopersicum HOM05D007571 ORTHO05D009439 6.5e-17 90.5 83 59.0
Sopen05g033610 Solanum pennellii HOM05D007571 ORTHO05D009439 6.5e-17 90.5 83 59.0
ClCG02G007100 Citrullus lanatus HOM05D007571 ORTHO05D009439 8.5e-17 90.1 66 72.7
Nn6g34507 Nelumbo nucifera HOM05D007571 ORTHO05D009439 8.5e-17 90.1 65 67.7
AUR62030860 Chenopodium quinoa HOM05D007571 ORTHO05D009439 1.1e-16 89.7 64 65.6
Ah.01g007010 Amaranthus hybridus HOM05D007571 ORTHO05D009439 1.5e-16 89.4 72 58.3
ATR0739G046 Amborella trichopoda HOM05D007571 ORTHO05D009439 1.5e-16 89.4 63 74.6
DCAR_028375 Daucus carota HOM05D007571 ORTHO05D009439 1.5e-16 89.4 67 68.7
Migut.F01585 Erythranthe guttata HOM05D007571 ORTHO05D009439 1.5e-16 89.4 67 65.7
Nitab4.5_0000687g0180 Nicotiana tabacum HOM05D007571 ORTHO05D009439 1.5e-16 89.4 67 67.2
SalBow6G2573 Salvia bowleyana HOM05D007571 ORTHO05D009439 1.5e-16 89.4 67 62.7
HanXRQChr02g0053531 Helianthus annuus HOM05D007571 ORTHO05D009439 1.9e-16 89.0 67 65.7
Lj5g0013426 Lotus japonicus HOM05D007571 ORTHO05D009439 1.9e-16 89.0 65 66.2
Nitab4.5_0017347g0020 Nicotiana tabacum HOM05D007571 ORTHO05D009439 1.9e-16 89.0 67 67.2
PSO541G4064 Papaver somniferum HOM05D007571 ORTHO05D009439 1.9e-16 89.0 67 64.2
arahy.Tifrunner.gnm1.ann1.A1M8SQ Arachis hypogaea HOM05D007571 ORTHO05D009439 3.2e-16 88.2 65 60.0
arahy.Tifrunner.gnm1.ann1.I40GDJ Arachis hypogaea HOM05D007571 ORTHO05D009439 3.2e-16 88.2 65 60.0
CiPaw.05G019300 Carya illinoinensis HOM05D000470 ORTHO05D000348 3.2e-16 88.2 60 73.3
Cc02_g09420 Coffea canephora HOM05D007571 ORTHO05D009439 3.2e-16 88.2 83 57.8
ECA238G3778 Erigeron canadensis HOM05D007571 ORTHO05D009439 3.2e-16 88.2 67 65.7
Peaxi162Scf00519g00423 Petunia axillaris HOM05D007571 ORTHO05D009439 3.2e-16 88.2 67 67.2
Os03g0731100 Oryza sativa ssp. japonica HOM05D007571 ORTHO05D009439 5.5e-16 87.4 63 68.3
PSO675G4064 Papaver somniferum HOM05D007571 ORTHO05D009439 5.5e-16 87.4 67 62.7
Zm00001eb056210 Zea mays HOM05D007571 ORTHO05D009439 5.5e-16 87.4 63 66.7
Phvul.007G046800 Phaseolus vulgaris HOM05D007571 ORTHO05D009439 9.4e-16 86.7 65 64.6
Lalb_Chr21g0308001 Lupinus albus HOM05D007571 ORTHO05D009439 1.2e-15 86.3 65 63.1
RcHm_v2.0_Chr6g0252541 Rosa chinensis HOM05D007571 ORTHO05D009439 1.2e-15 86.3 67 61.2
MSTRG.417 Avicennia marina HOM05D007571 ORTHO05D009439 1.6e-15 85.9 65 66.2
FvH4_2g03581 Fragaria vesca HOM05D007571 ORTHO05D009439 2.1e-15 85.5 67 59.7
FAN20G2923 Fragaria x ananassa HOM05D007571 ORTHO05D009439 2.1e-15 85.5 67 59.7
PGSC0003DMG400023397 Solanum tuberosum HOM05D007571 ORTHO05D009439 2.7e-15 85.1 59 72.9
Gohir.D12G019400 Gossypium hirsutum HOM05D005832 ORTHO05D007117 3.6e-15 84.7 55 69.1
Gorai.008G019700 Gossypium raimondii HOM05D005832 ORTHO05D007117 4.7e-15 84.3 55 69.1
Glyma.10G256000 Glycine max HOM05D007571 ORTHO05D009439 6.1e-15 84.0 65 61.5
SGA_v2.0_scaffold62G21311 Striga asiatica HOM05D007002 ORTHO05D008602 2.3e-14 82.0 59 72.9
Sabra16G0182000 Salix brachista HOM05D007571 ORTHO05D009439 4.0e-14 81.3 110 42.7
SEGI_38446 Sequoiadendron giganteum HOM05D007571 ORTHO05D009439 4.0e-14 81.3 80 55.0
AagrBONN_evm.TU.Sc2ySwM_228.3762 Anthoceros agrestis HOM05D007571 ORTHO05D009439 1.3e-12 76.3 64 60.9
CBR_g6736 Chara braunii HOM05D007571 ORTHO05D009439 1.8e-11 72.4 72 52.8
VMungo0720G0585 Vigna mungo HOM05D007571 ORTHO05D009439 5.4e-11 70.9 60 56.7
Pp3c17_8360 Physcomitrium patens HOM05D007571 ORTHO05D009439 1.3e-09 66.2 70 47.1
SalBow6G2452 Salvia bowleyana HOM05D007571 ORTHO05D009439 1.1e-08 63.2 45 64.4
Cre02.g086100 Chlamydomonas reinhardtii HOM05D007571 ORTHO05D009439 2.3e-06 55.5 68 42.6


User provided reference genes

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