Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR039670 Cardamine hirsuta HOM05D003855 ORTHO05D004722 0.0e+00 1430.6 722 100.0
Carub.0001s3883 Capsella rubella HOM05D003855 ORTHO05D004722 0.0e+00 1326.6 722 92.5
AL1G57020 Arabidopsis lyrata HOM05D003855 ORTHO05D004722 0.0e+00 1326.2 722 93.2
AT1G49630 Arabidopsis thaliana HOM05D003855 ORTHO05D004722 0.0e+00 1318.9 721 92.6
Thhalv10011199m.g Eutrema salsugineum HOM05D003855 ORTHO05D004722 0.0e+00 1317.8 722 92.4
Sp1g36500 Schrenkiella parvula HOM05D003855 ORTHO05D004722 0.0e+00 1313.1 722 91.6
C06p04590 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1304.3 722 90.6
A06p03570 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1302.3 722 90.7
BcaC08g43166 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1302.0 722 90.4
BolC6t35586H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1302.0 722 90.4
BraA06t23565Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1297.0 722 90.4
BcaB07g33638 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1292.7 722 90.4
AL3G32540 Arabidopsis lyrata HOM05D003855 ORTHO05D004722 0.0e+00 1278.5 722 88.2
AT3G19170 Arabidopsis thaliana HOM05D003855 ORTHO05D004722 0.0e+00 1270.8 722 87.5
CARHR094570 Cardamine hirsuta HOM05D003855 ORTHO05D004722 0.0e+00 1270.4 722 87.8
Carub.0003s1899 Capsella rubella HOM05D003855 ORTHO05D004722 0.0e+00 1269.2 722 87.7
Sp3g17240 Schrenkiella parvula HOM05D003855 ORTHO05D004722 0.0e+00 1269.2 722 88.0
BraA01t03617Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1263.1 722 87.3
BraA03t13267Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1261.9 722 87.0
Thhalv10019955m.g Eutrema salsugineum HOM05D003855 ORTHO05D004722 0.0e+00 1261.9 722 87.7
A03p41100 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1258.0 722 86.7
Aa31LG10G4390 Aethionema arabicum HOM05D003855 ORTHO05D004722 0.0e+00 1257.7 722 87.7
A01p35360 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1256.9 722 87.1
BolC3t17311H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1256.9 722 86.7
C03p50190 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1256.1 722 86.7
BcaB04g19030 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1252.7 722 86.3
BcaC01g03642 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1250.0 722 86.1
C01p44870 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1249.6 722 86.3
THA.LOC104818544 Tarenaya hassleriana HOM05D003855 ORTHO05D004722 0.0e+00 1243.8 722 87.0
BolC1t04455H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1233.4 772 81.1
Aa31LG8G5960 Aethionema arabicum HOM05D003855 ORTHO05D004722 0.0e+00 1227.6 722 85.9
THA.LOC104801598 Tarenaya hassleriana HOM05D003855 ORTHO05D004722 0.0e+00 1214.9 722 84.8
Cpa.g.sc62.29 Carica papaya HOM05D003855 ORTHO05D004722 0.0e+00 1193.7 722 81.6
Thecc.02G098600 Theobroma cacao HOM05D003855 ORTHO05D004722 0.0e+00 1178.7 722 80.2
Gorai.012G150300 Gossypium raimondii HOM05D003855 ORTHO05D004722 0.0e+00 1178.3 722 80.5
COL.COLO4_32675 Corchorus olitorius HOM05D003855 ORTHO05D004722 0.0e+00 1177.2 722 80.6
Gohir.D04G162300 Gossypium hirsutum HOM05D003855 ORTHO05D004722 0.0e+00 1177.2 722 80.3
Cfa005469 Carpinus fangiana HOM05D003855 ORTHO05D004722 0.0e+00 1175.6 722 80.1
Dinv42141 Davidia involucrata HOM05D003855 ORTHO05D004722 0.0e+00 1175.2 722 79.9
Gohir.A04G120800 Gossypium hirsutum HOM05D003855 ORTHO05D004722 0.0e+00 1174.5 722 80.2
Duzib052G0714 Durio zibethinus HOM05D003855 ORTHO05D004722 0.0e+00 1172.9 722 80.2
QL11p036227 Quercus lobata HOM05D003855 ORTHO05D004722 0.0e+00 1172.9 722 79.9
FAN27G3432 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1171.0 722 80.6
Prupe.8G122100 Prunus persica HOM05D003855 ORTHO05D004722 0.0e+00 1167.9 722 80.3
Manes.10G066200 Manihot esculenta HOM05D003855 ORTHO05D004722 0.0e+00 1166.8 719 78.9
Ciclev10027722m.g Citrus clementina HOM05D003855 ORTHO05D004722 0.0e+00 1164.4 722 79.4
TWI79G1596 Tripterygium wilfordii HOM05D003855 ORTHO05D004722 0.0e+00 1163.3 716 79.1
Lj5A208T47 Lonicera japonica HOM05D003855 ORTHO05D004722 0.0e+00 1160.2 722 79.4
FvH4_2g06380 Fragaria vesca HOM05D003855 ORTHO05D004722 0.0e+00 1159.8 722 79.9
FAN20G0084 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1159.8 722 79.9
Potri.004G142300 Populus trichocarpa HOM05D003855 ORTHO05D004722 0.0e+00 1157.9 722 78.7
Potri.009G103700 Populus trichocarpa HOM05D003855 ORTHO05D004722 0.0e+00 1156.4 722 79.1
Sabra09G0079400 Salix brachista HOM05D003855 ORTHO05D004722 0.0e+00 1156.0 722 78.8
RcHm_v2.0_Chr6g0258261 Rosa chinensis HOM05D003855 ORTHO05D004722 0.0e+00 1155.6 722 79.9
Nn5g30224 Nelumbo nucifera HOM05D003855 ORTHO05D004722 0.0e+00 1154.8 722 78.5
GSVIVG01031766001 Vitis vinifera HOM05D003855 ORTHO05D004722 0.0e+00 1154.4 722 79.1
CSS0001000 Camellia sinensis var. sinensis HOM05D003855 ORTHO05D004722 0.0e+00 1152.1 722 78.7
Sabra04G0094100 Salix brachista HOM05D003855 ORTHO05D004722 0.0e+00 1150.6 722 78.5
Eucgr.G01465 Eucalyptus grandis HOM05D003855 ORTHO05D004722 0.0e+00 1149.4 722 78.4
Aqoxy6G01362 Aquilegia oxysepala HOM05D003855 ORTHO05D004722 0.0e+00 1148.7 722 78.3
TAR381G1366 Trochodendron aralioides HOM05D003855 ORTHO05D004722 0.0e+00 1147.9 722 78.4
arahy.Tifrunner.gnm1.ann1.920WM2 Arachis hypogaea HOM05D003855 ORTHO05D004722 0.0e+00 1146.7 722 78.3
FAN15G0137 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1146.3 750 77.1
CiPaw.05G052400 Carya illinoinensis HOM05D003855 ORTHO05D004722 0.0e+00 1144.8 722 78.4
Glyma.01G244900 Glycine max HOM05D003855 ORTHO05D004722 0.0e+00 1142.5 722 77.6
PGR042G3302 Punica granatum HOM05D003855 ORTHO05D004722 0.0e+00 1139.0 722 78.0
arahy.Tifrunner.gnm1.ann1.7G1ZKD Arachis hypogaea HOM05D003855 ORTHO05D004722 0.0e+00 1138.3 722 78.3
MELO3C018441.2 Cucumis melo HOM05D003855 ORTHO05D004722 0.0e+00 1138.3 722 78.8
CsaV3_7G008690 Cucumis sativus L. HOM05D003855 ORTHO05D004722 0.0e+00 1135.2 722 78.4
Ca_24336_v3 Cicer arietinum L. HOM05D003855 ORTHO05D004722 0.0e+00 1134.8 723 76.8
MBI06_g04502_MAGBIO Magnolia biondii HOM05D003855 ORTHO05D004722 0.0e+00 1134.4 722 76.7
VMungo1215G1975 Vigna mungo HOM05D003855 ORTHO05D004722 0.0e+00 1133.6 722 77.4
PSO675G1899 Papaver somniferum HOM05D003855 ORTHO05D004722 0.0e+00 1131.3 722 77.7
Phvul.002G054400 Phaseolus vulgaris HOM05D003855 ORTHO05D004722 0.0e+00 1130.9 722 77.4
Dinv23608 Davidia involucrata HOM05D003855 ORTHO05D004722 0.0e+00 1130.2 716 77.2
Medtr5g004680 Medicago truncatula HOM05D003855 ORTHO05D004722 0.0e+00 1130.2 725 76.6
Lj1g0003010 Lotus japonicus HOM05D003855 ORTHO05D004722 0.0e+00 1126.7 723 76.6
TPR.G21611 Trifolium pratense HOM05D003855 ORTHO05D004722 0.0e+00 1126.3 723 76.2
Sed0020763 Sechium edule HOM05D003855 ORTHO05D004722 0.0e+00 1124.4 722 77.6
ECA234G3461 Erigeron canadensis HOM05D003855 ORTHO05D004722 0.0e+00 1123.6 722 76.5
PSO541G0814 Papaver somniferum HOM05D003855 ORTHO05D004722 0.0e+00 1123.6 722 77.0
Psat4g213560 Pisum sativum HOM05D003855 ORTHO05D004722 0.0e+00 1121.7 723 76.1
Peaxi162Scf00016g01731 Petunia axillaris HOM05D003855 ORTHO05D004722 0.0e+00 1121.3 722 75.9
DCAR_029027 Daucus carota HOM05D003855 ORTHO05D004722 0.0e+00 1116.3 722 75.5
HanXRQChr10g0301751 Helianthus annuus HOM05D003855 ORTHO05D004722 0.0e+00 1114.8 722 76.3
SalBow6G4323 Salvia bowleyana HOM05D003855 ORTHO05D004722 0.0e+00 1113.2 722 75.9
Migut.B00330 Erythranthe guttata HOM05D003855 ORTHO05D004722 0.0e+00 1112.4 722 76.3
Sopen01g050820 Solanum pennellii HOM05D003855 ORTHO05D004722 0.0e+00 1112.4 722 76.0
Sc08g0000010 Simmondsia chinensis HOM05D003855 ORTHO05D004722 0.0e+00 1110.5 716 75.0
Solyc01g108600.3 Solanum lycopersicum HOM05D003855 ORTHO05D004722 0.0e+00 1110.5 722 75.9
Lalb_Chr16g0376231 Lupinus albus HOM05D003855 ORTHO05D004722 0.0e+00 1109.7 722 75.2
Oeu007277.1 Olea europaea HOM05D003855 ORTHO05D004722 0.0e+00 1109.0 722 75.8
Nitab4.5_0002097g0080 Nicotiana tabacum HOM05D003855 ORTHO05D004722 0.0e+00 1108.6 722 75.8
CAN.G1041.7 Capsicum annuum HOM05D003855 ORTHO05D004722 0.0e+00 1106.7 731 75.4
PGSC0003DMG400025820 Solanum tuberosum HOM05D003855 ORTHO05D004722 0.0e+00 1106.3 722 75.6
CDE10G0143 Ceratophyllum demersum HOM05D003855 ORTHO05D004722 0.0e+00 1104.0 722 74.2
Cc02_g18640 Coffea canephora HOM05D003855 ORTHO05D004722 0.0e+00 1102.0 722 74.5
Hund00328 Selenicereus undatus HOM05D003855 ORTHO05D004722 0.0e+00 1101.7 716 75.1
MSTRG.16753 Avicennia marina HOM05D003855 ORTHO05D004722 0.0e+00 1097.4 722 74.5
ATR0100G044 Amborella trichopoda HOM05D003855 ORTHO05D004722 0.0e+00 1093.2 719 74.0
Nitab4.5_0001899g0100 Nicotiana tabacum HOM05D003855 ORTHO05D004722 0.0e+00 1090.9 722 74.9
SGA_v2.0_scaffold32G13071 Striga asiatica HOM05D003855 ORTHO05D004722 0.0e+00 1080.1 745 72.9
Zm00001eb255690 Zea mays HOM05D003855 ORTHO05D004722 0.0e+00 1077.4 722 73.3
DCAR_001621 Daucus carota HOM05D003855 ORTHO05D004722 0.0e+00 1076.2 716 73.0
Lsat_1_v5_gn_5_112961 Lactuca sativa HOM05D003855 ORTHO05D004722 1.7e-310 1068.9 717 74.1
Ah.01g020190 Amaranthus hybridus HOM05D003855 ORTHO05D004722 2.0e-308 1062.0 716 73.0
EL10Ac9g21832 Beta vulgaris HOM05D003855 ORTHO05D004722 8.1e-305 1050.0 717 72.9
AUR62011441 Chenopodium quinoa HOM05D003855 ORTHO05D004722 1.4e-301 1039.3 722 71.3
Rhsim11G0167000 Rhododendron simsii HOM05D003855 ORTHO05D004722 1.4e-301 1039.3 833 64.5
vmacro02191 Vaccinium macrocarpon HOM05D003855 ORTHO05D004722 1.3e-299 1032.7 804 66.8
AUR62016621 Chenopodium quinoa HOM05D003855 ORTHO05D004722 2.3e-299 1031.9 722 70.6
MD10G1092200 Malus domestica HOM05D003855 ORTHO05D004722 1.2e-292 1009.6 722 71.7
DCAR_001622 Daucus carota HOM05D003855 ORTHO05D004722 9.3e-285 983.4 716 67.9
Pp3c5_3160 Physcomitrium patens HOM05D003855 ORTHO05D004722 1.1e-282 976.5 722 66.6
ClCG02G005810 Citrullus lanatus HOM05D003855 ORTHO05D004722 4.3e-282 974.5 741 68.6
SMO169G0211 Selaginella moellendorffii HOM05D003855 ORTHO05D004722 1.4e-277 959.5 713 65.5
SGA_v2.0_scaffold90G27671 Striga asiatica HOM05D003855 ORTHO05D004722 4.0e-272 941.4 651 71.4
Mapoly0138s0034 Marchantia polymorpha HOM05D003855 ORTHO05D004722 3.2e-269 931.8 722 63.4
CBR_g17894 Chara braunii HOM05D003855 ORTHO05D004722 5.1e-267 924.5 724 63.5
Haze_01842 Corylus avellana HOM05D003855 ORTHO05D004722 1.4e-253 879.8 722 63.3
Haze_01847 Corylus avellana HOM05D003855 ORTHO05D004722 3.2e-253 878.6 722 63.3
Actinidia00451 Actinidia chinensis HOM05D003855 ORTHO05D004722 3.6e-252 875.2 595 73.3
Mapoly0813s0001 Marchantia polymorpha HOM05D003855 ORTHO05D004722 3.0e-235 818.9 722 57.3
Prupe.8G122200 Prunus persica HOM05D003855 ORTHO05D004722 6.3e-225 784.6 723 57.8
Mapoly0138s0037 Marchantia polymorpha HOM05D003855 ORTHO05D004722 1.2e-212 743.8 670 56.4
MCO05G354 Micromonas commoda HOM05D003855 ORTHO05D004722 9.2e-208 727.6 716 51.1
MD05G1078000 Malus domestica HOM05D003855 ORTHO05D004722 1.6e-207 726.9 714 55.0
Cre01.g020918 Chlamydomonas reinhardtii HOM05D003855 ORTHO05D004722 1.0e-206 724.2 708 52.5
PRCOL_00004407 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 1.2e-204 717.2 710 51.8
ECA238G1787 Erigeron canadensis HOM05D003855 ORTHO05D004722 2.6e-202 709.5 645 58.9
HPP92_005967 Vanilla planifolia HOM05D003855 ORTHO05D004722 6.0e-199 698.4 482 70.7
HanXRQChr07g0196921 Helianthus annuus HOM05D003855 ORTHO05D004722 1.3e-193 680.6 632 56.3
MD11G1150900 Malus domestica HOM05D003855 ORTHO05D004722 1.8e-171 607.1 389 77.6
Actinidia12962 Actinidia chinensis HOM05D003855 ORTHO05D004722 3.2e-168 596.3 531 59.5
SEGI_28735 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 6.7e-158 562.0 396 71.2
Atru.chr5.2745 Acer truncatum HOM05D003855 ORTHO05D004722 3.4e-154 549.7 347 79.8
CBR_g29853 Chara braunii HOM05D003855 ORTHO05D004722 2.7e-151 540.0 688 42.0
Lsat_1_v5_gn_2_29981 Lactuca sativa HOM05D003855 ORTHO05D004722 2.9e-145 520.0 392 63.3
SHI05877 Sapria himalayana HOM05D003855 ORTHO05D004722 5.1e-134 482.6 392 63.0
HPP92_005974 Vanilla planifolia HOM05D003855 ORTHO05D004722 5.7e-125 452.6 308 70.8
unitig_21.g20751 Utricularia gibba HOM05D003855 ORTHO05D004722 7.7e-122 442.2 319 66.8
SEGI_28882 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 3.8e-121 439.9 324 66.0
SHI05876 Sapria himalayana HOM05D003855 ORTHO05D004722 5.2e-118 429.5 320 67.2
Atru.chr5.2744 Acer truncatum HOM05D003855 ORTHO05D004722 2.0e-101 374.4 226 80.1
SHI03491 Sapria himalayana HOM05D000105 ORTHO05D004722 3.6e-95 353.6 283 63.3
MD05G1078600 Malus domestica HOM05D003855 ORTHO05D004722 6.6e-57 226.5 222 55.0
PRCOL_00005679 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 2.4e-51 208.0 738 27.2
MD05G1077700 Malus domestica HOM05D003855 ORTHO05D004722 9.3e-51 206.1 310 42.9
Aqoxy7G03045 Aquilegia oxysepala HOM05D003855 ORTHO05D004722 1.9e-48 198.4 331 33.5
MCO14G172 Micromonas commoda HOM05D003855 ORTHO05D004722 1.5e-45 188.7 686 25.2
Ciclev10029929m.g Citrus clementina HOM05D003855 ORTHO05D004722 4.5e-45 187.2 122 75.4
PRCOL_00005085 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 5.8e-45 186.8 712 24.3
Ciclev10030315m.g Citrus clementina HOM05D003855 ORTHO05D004722 7.6e-45 186.4 118 77.1
Os02g0761400 Oryza sativa ssp. japonica HOM05D003855 ORTHO05D004722 1.1e-43 182.6 123 73.2
MD05G1078400 Malus domestica HOM05D003855 ORTHO05D246709 4.6e-42 177.2 220 49.5
Cfa026983 Carpinus fangiana HOM05D003855 ORTHO05D004722 5.1e-41 173.7 716 23.6
SHI03495 Sapria himalayana HOM05D000119 ORTHO05D000054 1.3e-39 169.1 154 59.7
Actinidia00452 Actinidia chinensis HOM05D003855 ORTHO05D004722 1.6e-39 168.7 105 79.0
Sc23g0007040 Simmondsia chinensis HOM05D003855 ORTHO05D004722 2.9e-36 157.9 149 55.7
CBR_g30953 Chara braunii HOM05D003855 ORTHO05D004722 1.3e-28 132.5 765 20.9
COL.COLO4_14247 Corchorus olitorius HOM05D003855 ORTHO05D004722 7.9e-26 123.2 100 61.0
SHI06221 Sapria himalayana HOM05D003855 ORTHO05D000001 7.9e-26 123.2 111 55.9
CBR_g53548 Chara braunii HOM05D003855 ORTHO05D004722 2.6e-21 108.2 288 25.3
Atru.chr5.2746 Acer truncatum HOM05D003855 ORTHO05D004722 3.2e-19 101.3 65 75.4
CBR_g46009 Chara braunii HOM05D003248 ORTHO05D000301 2.0e-16 92.0 209 26.3
Actinidia12961 Actinidia chinensis HOM05D003855 ORTHO05D004722 9.7e-16 89.7 82 56.1
MD05G1077600 Malus domestica HOM05D003855 ORTHO05D004722 2.9e-12 78.2 61 57.4
VMungo1309G1152 Vigna mungo HOM05D003855 ORTHO05D000575 1.9e-11 75.5 51 68.6
AUR62024613 Chenopodium quinoa HOM05D025040 ORTHO05D138236 1.6e-10 72.4 56 60.7
Lsat_1_v5_gn_1_14301 Lactuca sativa HOM05D003855 ORTHO05D004560 7.4e-08 63.5 36 77.8
Lsat_1_v5_gn_9_77040 Lactuca sativa HOM05D003409 ORTHO05D004015 9.7e-08 63.2 45 66.7
A02p03970 Brassica napus HOM05D018909 ORTHO05D016798 6.3e-07 60.5 51 70.6
A05p09840 Brassica napus HOM05D018909 ORTHO05D016798 6.3e-07 60.5 51 70.6
A03p60340 Brassica napus HOM05D037741 ORTHO05D016798 1.8e-06 58.9 51 70.6


User provided reference genes

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