Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR039560 Cardamine hirsuta HOM05D000803 ORTHO05D009288 1.5e-43 179.1 88 100.0
AT1G50320 Arabidopsis thaliana HOM05D000803 ORTHO05D009288 1.4e-33 146.0 82 87.8
AL1G57960 Arabidopsis lyrata HOM05D000803 ORTHO05D009288 3.1e-33 144.8 82 86.6
Sp1g37160 Schrenkiella parvula HOM05D000803 ORTHO05D009288 9.0e-33 143.3 82 84.1
Thhalv10012400m.g Eutrema salsugineum HOM05D000803 ORTHO05D009288 1.5e-32 142.5 82 84.1
Carub.0001s3942 Capsella rubella HOM05D000803 ORTHO05D009288 4.5e-32 141.0 82 84.1
A06p03220 Brassica napus HOM05D000803 ORTHO05D009288 1.4e-30 136.0 71 91.5
C06p05410 Brassica napus HOM05D000803 ORTHO05D009288 1.4e-30 136.0 71 91.5
BolC6t35646H Brassica oleracea HOM05D000803 ORTHO05D009288 1.4e-30 136.0 71 91.5
BraA06t23533Z Brassica rapa HOM05D000803 ORTHO05D009288 1.4e-30 136.0 71 91.5
THA.LOC104826518 Tarenaya hassleriana HOM05D000803 ORTHO05D009288 3.0e-28 128.3 82 74.4
Potri.007G074000 Populus trichocarpa HOM05D000803 ORTHO05D009288 5.1e-28 127.5 82 74.4
Aa31LG10G3930 Aethionema arabicum HOM05D000803 ORTHO05D009288 8.7e-28 126.7 82 75.6
Sabra07G0061800 Salix brachista HOM05D000803 ORTHO05D009288 1.9e-27 125.6 82 73.2
TPR.G4141 Trifolium pratense HOM05D000803 ORTHO05D009288 1.6e-26 122.5 82 70.7
Peaxi162Scf00021g02221 Petunia axillaris HOM05D000803 ORTHO05D009288 2.1e-26 122.1 82 69.5
Nitab4.5_0002387g0050 Nicotiana tabacum HOM05D000803 ORTHO05D009288 6.2e-26 120.6 82 68.3
GSVIVG01026149001 Vitis vinifera HOM05D000803 ORTHO05D009288 1.1e-25 119.8 75 74.7
CiPaw.05G170800 Carya illinoinensis HOM05D000803 ORTHO05D009288 1.4e-25 119.4 82 68.3
Gohir.D04G148500 Gossypium hirsutum HOM05D000803 ORTHO05D009288 1.4e-25 119.4 82 70.7
Gorai.012G134800 Gossypium raimondii HOM05D000803 ORTHO05D009288 1.4e-25 119.4 82 70.7
Gohir.A04G109000 Gossypium hirsutum HOM05D000803 ORTHO05D009288 1.8e-25 119.0 82 70.7
Ciclev10032824m.g Citrus clementina HOM05D000803 ORTHO05D009288 2.4e-25 118.6 71 78.9
TWI74G0120 Tripterygium wilfordii HOM05D000803 ORTHO05D009288 3.1e-25 118.2 71 77.5
Duzib052G0208 Durio zibethinus HOM05D000803 ORTHO05D009288 4.0e-25 117.9 82 69.5
Sopen01g003770 Solanum pennellii HOM05D000803 ORTHO05D009288 4.0e-25 117.9 82 67.1
arahy.Tifrunner.gnm1.ann1.NS7DLW Arachis hypogaea HOM05D000803 ORTHO05D009288 5.3e-25 117.5 82 68.3
Ca_11227_v3 Cicer arietinum L. HOM05D006642 ORTHO05D008856 5.3e-25 117.5 82 68.3
Oeu006340.1 Olea europaea HOM05D000803 ORTHO05D009288 5.3e-25 117.5 82 68.3
Solyc01g008250.3 Solanum lycopersicum HOM05D000803 ORTHO05D009288 5.3e-25 117.5 82 65.9
Lsat_1_v5_gn_3_36620 Lactuca sativa HOM05D000803 ORTHO05D009288 6.9e-25 117.1 82 68.3
Atru.chr11.1152 Acer truncatum HOM05D000803 ORTHO05D009288 1.2e-24 116.3 82 69.5
FvH4_4g06760 Fragaria vesca HOM05D000803 ORTHO05D009288 2.0e-24 115.5 82 67.1
FAN07G2540 Fragaria x ananassa HOM05D000803 ORTHO05D009288 2.0e-24 115.5 82 67.1
FAN12G0291 Fragaria x ananassa HOM05D000803 ORTHO05D009288 2.0e-24 115.5 82 67.1
Glyma.10G285000 Glycine max HOM05D000803 ORTHO05D009288 2.0e-24 115.5 82 67.1
CAN.G282.48 Capsicum annuum HOM05D000803 ORTHO05D009288 2.6e-24 115.2 82 67.1
Eucgr.J00880 Eucalyptus grandis HOM05D000803 ORTHO05D009288 2.6e-24 115.2 82 69.5
Glyma.20G104000 Glycine max HOM05D000803 ORTHO05D009288 2.6e-24 115.2 82 67.1
PGSC0003DMG400016361 Solanum tuberosum HOM05D000803 ORTHO05D009288 2.6e-24 115.2 82 64.6
Haze_11775 Corylus avellana HOM05D000803 ORTHO05D009288 3.4e-24 114.8 71 74.6
Prupe.1G070700 Prunus persica HOM05D000803 ORTHO05D009288 4.5e-24 114.4 82 67.1
Medtr1g114290 Medicago truncatula HOM05D000803 ORTHO05D009288 5.8e-24 114.0 82 65.9
QL03p046068 Quercus lobata HOM05D000803 ORTHO05D009288 5.8e-24 114.0 81 65.4
QL03p046129 Quercus lobata HOM05D000803 ORTHO05D009288 5.8e-24 114.0 81 65.4
Lj5g0005958 Lotus japonicus HOM05D000803 ORTHO05D009288 7.6e-24 113.6 79 65.8
arahy.Tifrunner.gnm1.ann1.SVRA7T Arachis hypogaea HOM05D000803 ORTHO05D009288 1.0e-23 113.2 75 72.0
Duzib132G0129 Durio zibethinus HOM05D000803 ORTHO05D009288 1.0e-23 113.2 82 65.9
PSO782G1772 Papaver somniferum HOM05D000803 ORTHO05D009288 1.0e-23 113.2 80 63.8
Lalb_Chr02g0143601 Lupinus albus HOM05D000803 ORTHO05D009288 1.3e-23 112.8 80 66.2
Dinv17639 Davidia involucrata HOM05D000803 ORTHO05D009288 1.7e-23 112.5 71 71.8
Phvul.007G015500 Phaseolus vulgaris HOM05D000803 ORTHO05D009288 1.7e-23 112.5 82 67.1
RcHm_v2.0_Chr4g0398691 Rosa chinensis HOM05D000803 ORTHO05D009288 1.7e-23 112.5 82 65.9
CANSAT78G0634 Cannabis sativa HOM05D000803 ORTHO05D009288 2.2e-23 112.1 82 67.1
Cc00_g16790 Coffea canephora HOM05D000803 ORTHO05D009288 2.2e-23 112.1 82 63.4
Migut.E00687 Erythranthe guttata HOM05D000803 ORTHO05D009288 2.2e-23 112.1 82 62.2
PGR044G0351 Punica granatum HOM05D000803 ORTHO05D009288 2.2e-23 112.1 71 70.4
Rhsim09G0069900 Rhododendron simsii HOM05D000803 ORTHO05D009288 2.2e-23 112.1 71 74.6
RhsimUnG0173800 Rhododendron simsii HOM05D000803 ORTHO05D009288 2.2e-23 112.1 71 74.6
MBI06_g27502_MAGBIO Magnolia biondii HOM05D000803 ORTHO05D009288 2.9e-23 111.7 82 63.4
VMungo0720G1024 Vigna mungo HOM05D000803 ORTHO05D009288 2.9e-23 111.7 82 65.9
Psat6g233480 Pisum sativum HOM05D000803 ORTHO05D009288 3.8e-23 111.3 82 64.6
CSS0035072 Camellia sinensis var. sinensis HOM05D000803 ORTHO05D009288 4.9e-23 110.9 71 71.8
CSS0035181 Camellia sinensis var. sinensis HOM05D000803 ORTHO05D009288 4.9e-23 110.9 71 71.8
Actinidia04326 Actinidia chinensis HOM05D000803 ORTHO05D009288 6.5e-23 110.5 71 70.4
Migut.O00873 Erythranthe guttata HOM05D000803 ORTHO05D009288 6.5e-23 110.5 82 61.0
Os04g0676100 Oryza sativa ssp. japonica HOM05D000803 ORTHO05D009288 8.4e-23 110.2 82 64.6
arahy.Tifrunner.gnm1.ann1.7N4CEX Arachis hypogaea HOM05D000803 ORTHO05D009288 1.1e-22 109.8 82 63.4
arahy.Tifrunner.gnm1.ann1.UN3H83 Arachis hypogaea HOM05D000803 ORTHO05D009288 1.1e-22 109.8 69 73.9
TAR622G1240 Trochodendron aralioides HOM05D000803 ORTHO05D009288 1.1e-22 109.8 71 70.4
Sc02g0004820 Simmondsia chinensis HOM05D000803 ORTHO05D009288 1.4e-22 109.4 79 63.3
arahy.Tifrunner.gnm1.ann1.2L9GNP Arachis hypogaea HOM05D000803 ORTHO05D009288 2.5e-22 108.6 82 62.2
arahy.Tifrunner.gnm1.ann1.6Y22KH Arachis hypogaea HOM05D000803 ORTHO05D009288 2.5e-22 108.6 80 62.5
Aqoxy7G01361 Aquilegia oxysepala HOM05D000803 ORTHO05D009288 4.2e-22 107.8 72 69.4
MSTRG.13680 Avicennia marina HOM05D000803 ORTHO05D009288 9.3e-22 106.7 82 61.0
Cpa.g.sc809.1 Carica papaya HOM05D000803 ORTHO05D009288 9.3e-22 106.7 69 68.1
SGA_v2.0_scaffold306G48029 Striga asiatica HOM05D000803 ORTHO05D009288 1.2e-21 106.3 82 61.0
Nn3g18624 Nelumbo nucifera HOM05D000803 ORTHO05D009288 2.1e-21 105.5 71 69.0
Zm00001eb066320 Zea mays HOM05D000803 ORTHO05D009288 4.6e-21 104.4 81 60.5
DCAR_002593 Daucus carota HOM05D000803 ORTHO05D009288 6.1e-21 104.0 80 57.5
SEGI_04482 Sequoiadendron giganteum HOM05D000803 ORTHO05D009288 7.9e-21 103.6 69 68.1
Nitab4.5_0000069g0180 Nicotiana tabacum HOM05D000803 ORTHO05D009288 1.3e-20 102.8 62 72.6
PSO063G3598 Papaver somniferum HOM05D000803 ORTHO05D009288 1.3e-20 102.8 80 58.8
ATR0618G274 Amborella trichopoda HOM05D000803 ORTHO05D009288 3.9e-20 101.3 68 64.7
arahy.Tifrunner.gnm1.ann1.2X0IV6 Arachis hypogaea HOM05D000803 ORTHO05D009288 1.1e-19 99.8 81 60.5
Lj3C848G3 Lonicera japonica HOM05D007202 ORTHO05D009125 3.3e-19 98.2 59 76.3
FAN22G0075 Fragaria x ananassa HOM05D000803 ORTHO05D009288 5.7e-19 97.4 69 66.7
CDE04G3619 Ceratophyllum demersum HOM05D000803 ORTHO05D009288 1.6e-18 95.9 72 59.7
Zm00001eb433660 Zea mays HOM05D000803 ORTHO05D009288 2.4e-17 92.0 77 55.8
Thecc.02G157100 Theobroma cacao HOM05D000803 ORTHO05D009288 4.1e-17 91.3 60 70.0
Cre01.g052250 Chlamydomonas reinhardtii HOM05D000803 ORTHO05D009288 6.9e-17 90.5 71 57.7
CDE02G1801 Ceratophyllum demersum HOM05D000803 ORTHO05D009288 4.5e-16 87.8 67 56.7
SMO364G0178 Selaginella moellendorffii HOM05D000803 ORTHO05D009288 6.5e-15 84.0 77 49.4
Cfa008764 Carpinus fangiana HOM05D000803 ORTHO05D009288 1.4e-14 82.8 71 56.3
Mapoly0022s0050 Marchantia polymorpha HOM05D000803 ORTHO05D009288 1.2e-13 79.7 79 49.4
Pp3c8_8140 Physcomitrium patens HOM05D000803 ORTHO05D009288 6.1e-13 77.4 82 43.9
Pp3c24_4980 Physcomitrium patens HOM05D000803 ORTHO05D009288 1.4e-12 76.3 82 46.3
MCO03G062 Micromonas commoda HOM05D000803 ORTHO05D009288 1.8e-12 75.9 72 52.8
AagrBONN_evm.TU.Sc2ySwM_117.4096 Anthoceros agrestis HOM05D000803 ORTHO05D009288 2.8e-10 68.6 78 38.5
vmacro15984 Vaccinium macrocarpon HOM05D000803 ORTHO05D009288 4.5e-08 61.2 36 72.2
Aqoxy5G00856 Aquilegia oxysepala HOM05D000803 ORTHO05D007008 5.9e-08 60.8 76 40.8
TPR.G17024 Trifolium pratense HOM05D000803 ORTHO05D007008 2.2e-07 58.9 76 42.1
HanXRQChr11g0320301 Helianthus annuus HOM05D000803 ORTHO05D007008 5.0e-07 57.8 75 40.0
Lsat_1_v5_gn_9_41160 Lactuca sativa HOM05D000803 ORTHO05D007008 5.0e-07 57.8 75 41.3
COL.COLO4_29854 Corchorus olitorius HOM05D000803 ORTHO05D007008 6.5e-07 57.4 75 40.0
COL.COLO4_33073 Corchorus olitorius HOM05D000803 ORTHO05D009288 6.5e-07 57.4 35 77.1
PSO541G3025 Papaver somniferum HOM05D000803 ORTHO05D007008 6.5e-07 57.4 77 36.4
PSO734G0001 Papaver somniferum HOM05D000803 ORTHO05D007008 6.5e-07 57.4 77 36.4
Atru.chr13.2085 Acer truncatum HOM05D000803 ORTHO05D007008 8.5e-07 57.0 76 39.5
Medtr1g098660 Medicago truncatula HOM05D000803 ORTHO05D007008 8.5e-07 57.0 76 40.8
PSO675G7586 Papaver somniferum HOM05D000803 ORTHO05D007008 8.5e-07 57.0 77 37.7
Ciclev10002691m.g Citrus clementina HOM05D000803 ORTHO05D007008 1.4e-06 56.2 80 38.8
ECA232G0506 Erigeron canadensis HOM05D000803 ORTHO05D007008 1.4e-06 56.2 75 38.7
Potri.002G066800 Populus trichocarpa HOM05D000803 ORTHO05D007008 1.4e-06 56.2 76 38.2
THA.LOC104812033 Tarenaya hassleriana HOM05D000803 ORTHO05D007008 1.4e-06 56.2 75 38.7
CARHR070300 Cardamine hirsuta HOM05D000803 ORTHO05D007008 1.9e-06 55.8 75 40.0
SalBow7G1797 Salvia bowleyana HOM05D000803 ORTHO05D007008 1.9e-06 55.8 75 40.0
SalBow7G3643 Salvia bowleyana HOM05D000803 ORTHO05D007008 1.9e-06 55.8 75 40.0
unitig_749.g13915 Utricularia gibba HOM05D000803 ORTHO05D007008 1.9e-06 55.8 72 38.9
AT1G76760 Arabidopsis thaliana HOM05D000803 ORTHO05D007008 2.5e-06 55.5 75 38.7
EL10Ac1g01567 Beta vulgaris HOM05D000803 ORTHO05D007008 2.5e-06 55.5 72 38.9
Sabra02G0053100 Salix brachista HOM05D000803 ORTHO05D007008 2.5e-06 55.5 76 36.8
Thecc.08G154400 Theobroma cacao HOM05D000803 ORTHO05D007008 2.5e-06 55.5 80 38.8
SMO367G1051 Selaginella moellendorffii HOM05D000803 ORTHO05D007008 4.2e-06 54.7 77 37.7
vmacro12407 Vaccinium macrocarpon HOM05D000803 ORTHO05D007008 4.2e-06 54.7 75 38.7
AL2G36910 Arabidopsis lyrata HOM05D000803 ORTHO05D007008 5.5e-06 54.3 75 38.7
CANSAT25G2976 Cannabis sativa HOM05D000803 ORTHO05D007008 5.5e-06 54.3 75 38.7
Cc10_g14920 Coffea canephora HOM05D000803 ORTHO05D007008 5.5e-06 54.3 75 37.3
Dinv41069 Davidia involucrata HOM05D000803 ORTHO05D007008 5.5e-06 54.3 75 37.3
Psat1g027360 Pisum sativum HOM05D000803 ORTHO05D007008 5.5e-06 54.3 72 38.9
Carub.0002s2367 Capsella rubella HOM05D000803 ORTHO05D007008 7.2e-06 53.9 75 38.7
CiPaw.16G011100 Carya illinoinensis HOM05D000803 ORTHO05D007008 7.2e-06 53.9 75 38.7
CSS0028056 Camellia sinensis var. sinensis HOM05D000803 ORTHO05D007008 9.4e-06 53.5 75 37.3
Ca_10681_v3 Cicer arietinum L. HOM05D000803 ORTHO05D007008 9.4e-06 53.5 72 37.5
Duzib116G0573 Durio zibethinus HOM05D000803 ORTHO05D007008 9.4e-06 53.5 80 36.2
Phvul.007G080600 Phaseolus vulgaris HOM05D000803 ORTHO05D007008 9.4e-06 53.5 72 37.5


User provided reference genes

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