Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR039340 Cardamine hirsuta HOM05D005911 ORTHO05D007565 4.8e-100 367.9 187 100.0
AL1G56510 Arabidopsis lyrata HOM05D003089 ORTHO05D003544 5.9e-82 307.8 191 84.3
AT1G49350 Arabidopsis thaliana HOM05D005911 ORTHO05D007565 2.9e-81 305.4 191 82.2
Sp1g36210 Schrenkiella parvula HOM05D005911 ORTHO05D007565 6.5e-81 304.3 191 81.7
Carub.0001s3853 Capsella rubella HOM05D005911 ORTHO05D007565 5.5e-80 301.2 187 82.4
Thhalv10011559m.g Eutrema salsugineum HOM05D005911 ORTHO05D007565 2.8e-76 288.9 188 80.9
AL1G56310 Arabidopsis lyrata HOM05D005911 ORTHO05D007565 9.1e-75 283.9 191 77.5
BcaC05g27521 Brassica carinata HOM05D005911 ORTHO05D007565 3.2e-72 275.4 191 75.4
C05p34970 Brassica napus HOM05D005911 ORTHO05D007565 3.2e-72 275.4 191 75.4
BolC5t32198H Brassica oleracea HOM05D005911 ORTHO05D007565 3.2e-72 275.4 191 75.4
C05p34650 Brassica napus HOM05D005911 ORTHO05D007565 2.1e-71 272.7 191 74.9
BraA05t20973Z Brassica rapa HOM05D005911 ORTHO05D007565 2.7e-71 272.3 191 73.8
BolC5t32220H Brassica oleracea HOM05D005911 ORTHO05D007565 6.1e-71 271.2 191 74.3
A05p20650 Brassica napus HOM05D005911 ORTHO05D007565 3.9e-70 268.5 191 74.3
BcaC05g27500 Brassica carinata HOM05D005911 ORTHO05D007565 6.7e-70 267.7 191 73.8
BcaB02g11057 Brassica carinata HOM05D005911 ORTHO05D007565 1.7e-68 263.1 191 71.7
A05p20720 Brassica napus HOM05D005911 ORTHO05D007565 3.7e-68 261.9 174 77.0
BraA05t20979Z Brassica rapa HOM05D005911 ORTHO05D007565 3.7e-68 261.9 174 77.0
Aa31LG10G4600 Aethionema arabicum HOM05D005713 ORTHO05D007751 2.0e-66 256.1 186 72.0
THA.LOC104804910 Tarenaya hassleriana HOM05D005911 ORTHO05D007565 1.3e-60 236.9 191 66.0
CARHR039370 Cardamine hirsuta HOM05D005911 ORTHO05D007565 1.4e-54 216.9 122 90.2
Phvul.007G233200 Phaseolus vulgaris HOM05D005911 ORTHO05D007565 6.1e-47 191.4 195 52.3
VMungo0720G1659 Vigna mungo HOM05D005911 ORTHO05D007565 6.8e-46 188.0 195 51.3
Actinidia17824 Actinidia chinensis HOM05D005911 ORTHO05D007565 8.8e-46 187.6 196 51.0
MD10G1080400 Malus domestica HOM05D005911 ORTHO05D007565 1.5e-45 186.8 196 51.5
FvH4_2g08380 Fragaria vesca HOM05D005911 ORTHO05D007565 2.8e-44 182.6 196 51.0
Lj4g0018405 Lotus japonicus HOM05D005911 ORTHO05D007565 3.7e-44 182.2 196 51.5
FAN24G3462 Fragaria x ananassa HOM05D005911 ORTHO05D007565 4.9e-44 181.8 196 51.0
FAN15G1485 Fragaria x ananassa HOM05D005911 ORTHO05D007565 1.4e-43 180.3 196 51.5
RcHm_v2.0_Chr6g0263461 Rosa chinensis HOM05D005911 ORTHO05D007565 2.4e-43 179.5 196 53.1
Potri.004G152100 Populus trichocarpa HOM05D005911 ORTHO05D007565 3.1e-43 179.1 194 50.0
Prupe.8G101700 Prunus persica HOM05D005911 ORTHO05D007565 3.1e-43 179.1 191 50.3
Rhsim05G0076000 Rhododendron simsii HOM05D005911 ORTHO05D007565 3.1e-43 179.1 196 51.0
arahy.Tifrunner.gnm1.ann1.CA4G6V Arachis hypogaea HOM05D005911 ORTHO05D007565 4.1e-43 178.7 195 54.4
Lalb_Chr16g0385211 Lupinus albus HOM05D005911 ORTHO05D007565 7.0e-43 177.9 196 50.0
Manes.17G099400 Manihot esculenta HOM05D005911 ORTHO05D007565 9.1e-43 177.6 194 50.0
CSS0013374 Camellia sinensis var. sinensis HOM05D005911 ORTHO05D007565 1.2e-42 177.2 196 50.5
vmacro19435 Vaccinium macrocarpon HOM05D005911 ORTHO05D007565 1.6e-42 176.8 190 48.4
Dinv42087 Davidia involucrata HOM05D005911 ORTHO05D007565 2.0e-42 176.4 196 51.0
Nitab4.5_0008989g0030 Nicotiana tabacum HOM05D005911 ORTHO05D007565 2.0e-42 176.4 195 49.7
Psat3g133040 Pisum sativum HOM05D005911 ORTHO05D007565 2.7e-42 176.0 196 50.5
Atru.chr5.2957 Acer truncatum HOM05D005911 ORTHO05D007565 3.5e-42 175.6 193 50.3
Hma1.2p1_0066F.1_g036670 Hydrangea macrophylla HOM05D005911 ORTHO05D007565 3.5e-42 175.6 194 50.5
Medtr4g084100 Medicago truncatula HOM05D005911 ORTHO05D007565 4.5e-42 175.3 196 50.5
Gohir.D04G144200 Gossypium hirsutum HOM05D005911 ORTHO05D007565 5.9e-42 174.9 195 48.2
Gorai.012G129800 Gossypium raimondii HOM05D005911 ORTHO05D007565 5.9e-42 174.9 195 48.2
QL11p042848 Quercus lobata HOM05D005911 ORTHO05D007565 5.9e-42 174.9 193 49.7
PGSC0003DMG400025190 Solanum tuberosum HOM05D005911 ORTHO05D007565 5.9e-42 174.9 194 47.4
TAR628G1003 Trochodendron aralioides HOM05D005911 ORTHO05D007565 7.7e-42 174.5 195 49.7
Solyc01g109450.3 Solanum lycopersicum HOM05D005911 ORTHO05D007565 1.3e-41 173.7 194 46.9
Sopen01g051640 Solanum pennellii HOM05D005911 ORTHO05D007565 1.3e-41 173.7 194 46.9
CiPaw.06G137300 Carya illinoinensis HOM05D005911 ORTHO05D007565 3.8e-41 172.2 186 51.1
MBI16_g17455_MAGBIO Magnolia biondii HOM05D005911 ORTHO05D007565 3.8e-41 172.2 188 48.4
TWI31G0066 Tripterygium wilfordii HOM05D005911 ORTHO05D007565 6.6e-41 171.4 195 49.7
Sed0023974 Sechium edule HOM05D005911 ORTHO05D007565 8.6e-41 171.0 188 47.9
TPR.G20990 Trifolium pratense HOM05D005911 ORTHO05D007565 1.5e-40 170.2 196 51.5
Ca_18760_v3 Cicer arietinum L. HOM05D005911 ORTHO05D007565 2.5e-40 169.5 196 49.5
PGR042G3082 Punica granatum HOM05D005911 ORTHO05D009502 2.5e-40 169.5 189 48.1
CAN.G322.116 Capsicum annuum HOM05D005911 ORTHO05D007565 4.3e-40 168.7 194 46.9
Duzib248G0238 Durio zibethinus HOM05D005911 ORTHO05D007565 4.3e-40 168.7 187 47.6
Glyma.20G019800 Glycine max HOM05D005911 ORTHO05D007565 4.3e-40 168.7 195 49.2
GSVIVG01024153001 Vitis vinifera HOM05D005911 ORTHO05D007565 4.3e-40 168.7 196 48.0
Nitab4.5_0001794g0010 Nicotiana tabacum HOM05D005911 ORTHO05D007565 9.5e-40 167.5 194 46.9
Cfa005027 Carpinus fangiana HOM05D005911 ORTHO05D007565 2.1e-39 166.4 194 49.5
Haze_02358 Corylus avellana HOM05D005911 ORTHO05D009502 2.1e-39 166.4 181 49.7
MELO3C012560.2 Cucumis melo HOM05D005911 ORTHO05D007565 2.8e-39 166.0 191 46.1
Cpa.g.sc62.118 Carica papaya HOM05D005911 ORTHO05D007565 3.6e-39 165.6 191 49.2
CsaV3_7G023300 Cucumis sativus L. HOM05D005911 ORTHO05D007565 3.6e-39 165.6 188 45.7
DCAR_003638 Daucus carota HOM05D005911 ORTHO05D007565 3.6e-39 165.6 197 47.7
Thecc.02G123100 Theobroma cacao HOM05D005911 ORTHO05D007565 4.7e-39 165.2 195 46.2
ClCG02G005220 Citrullus lanatus HOM05D005911 ORTHO05D007565 8.0e-39 164.5 191 46.1
AUR62011353 Chenopodium quinoa HOM05D005911 ORTHO05D007565 1.8e-38 163.3 195 47.2
EL10Ac9g21750 Beta vulgaris HOM05D005911 ORTHO05D007565 4.0e-38 162.2 195 44.6
AUR62016709 Chenopodium quinoa HOM05D005911 ORTHO05D007565 4.0e-38 162.2 195 46.2
Oeu014335.1 Olea europaea HOM05D005911 ORTHO05D007565 6.8e-38 161.4 194 47.4
FAN20G0571 Fragaria x ananassa HOM05D005911 ORTHO05D007565 2.0e-37 159.8 171 51.5
Sabra04G0100900 Salix brachista HOM05D005911 ORTHO05D007565 2.0e-37 159.8 180 48.9
COL.COLO4_32449 Corchorus olitorius HOM05D005911 ORTHO05D007565 2.6e-37 159.5 169 49.7
Peaxi162Scf00016g00941 Petunia axillaris HOM05D005911 ORTHO05D007565 7.5e-37 157.9 202 42.6
Migut.N01227 Erythranthe guttata HOM05D005911 ORTHO05D007565 9.8e-37 157.5 193 44.6
ECA236G0345 Erigeron canadensis HOM05D005911 ORTHO05D007565 1.7e-36 156.8 192 45.8
Cc02_g17800 Coffea canephora HOM05D005911 ORTHO05D007565 4.9e-36 155.2 184 48.4
Aqoxy5G01675 Aquilegia oxysepala HOM05D005911 ORTHO05D007565 6.4e-36 154.8 190 45.3
MSTRG.20102 Avicennia marina HOM05D005911 ORTHO05D007565 6.4e-36 154.8 193 45.1
Gohir.A04G104400 Gossypium hirsutum HOM05D005911 ORTHO05D007565 1.1e-35 154.1 185 45.9
Lj9A367G52 Lonicera japonica HOM05D005911 ORTHO05D007565 1.1e-35 154.1 171 48.5
Eucgr.G00462 Eucalyptus grandis HOM05D005911 ORTHO05D007565 7.0e-35 151.4 188 47.3
Hund00288 Selenicereus undatus HOM05D005911 ORTHO05D007565 7.0e-35 151.4 188 45.2
Nn1g05068 Nelumbo nucifera HOM05D005911 ORTHO05D007565 3.5e-34 149.1 190 45.3
Eucgr.G01900 Eucalyptus grandis HOM05D005911 ORTHO05D007565 5.9e-34 148.3 188 47.9
SalBow3G0191 Salvia bowleyana HOM05D005911 ORTHO05D007565 5.9e-34 148.3 191 42.9
Lsat_1_v5_gn_7_89660 Lactuca sativa HOM05D005911 ORTHO05D007565 1.3e-33 147.1 179 49.7
HanXRQChr16g0504971 Helianthus annuus HOM05D005911 ORTHO05D007565 2.3e-33 146.4 197 45.7
unitig_22.g6840 Utricularia gibba HOM05D005911 ORTHO05D007565 6.6e-33 144.8 183 44.8
Ah.01g006180 Amaranthus hybridus HOM05D002934 ORTHO05D003937 4.3e-32 142.1 171 45.6
Nitab4.5_0000443g0010 Nicotiana tabacum HOM05D005911 ORTHO05D007565 6.8e-30 134.8 186 44.1
Sc14g0001790 Simmondsia chinensis HOM05D005911 ORTHO05D007565 6.8e-30 134.8 214 39.7
Eucgr.G00468 Eucalyptus grandis HOM05D005911 ORTHO05D007565 2.0e-29 133.3 163 47.2
Sc14g0001910 Simmondsia chinensis HOM05D005911 ORTHO05D007565 2.0e-29 133.3 215 39.1
SGA_v2.0_scaffold55G19804 Striga asiatica HOM05D005911 ORTHO05D007565 6.4e-28 128.3 164 44.5
Zm00001eb346550 Zea mays HOM05D005911 ORTHO05D007565 3.5e-26 122.5 188 41.0
SGA_v2.0_scaffold44G16630 Striga asiatica HOM05D005911 ORTHO05D007565 1.7e-25 120.2 164 43.3
ATR0733G150 Amborella trichopoda HOM05D005911 ORTHO05D007565 3.9e-25 119.0 192 40.6
CAN.G149.23 Capsicum annuum HOM05D005911 ORTHO05D007565 1.1e-24 117.5 183 36.1
Os05g0185700 Oryza sativa ssp. japonica HOM05D005911 ORTHO05D007565 4.3e-24 115.5 186 36.6
TAR371G0586 Trochodendron aralioides HOM05D005911 ORTHO05D007565 1.3e-20 104.0 159 40.9
CARHR039360 Cardamine hirsuta HOM05D005911 ORTHO05D007565 2.9e-20 102.8 65 81.5
SEGI_31956 Sequoiadendron giganteum HOM05D005911 ORTHO05D007565 2.1e-18 96.7 184 35.9
arahy.Tifrunner.gnm1.ann1.IUSJ9T Arachis hypogaea HOM05D005911 ORTHO05D007565 2.5e-16 89.7 71 60.6
Pp3c15_14160 Physcomitrium patens HOM05D005911 ORTHO05D007565 1.8e-14 83.6 145 33.8
Ciclev10029888m.g Citrus clementina HOM05D005911 ORTHO05D007565 5.2e-14 82.0 119 39.5
Potri.004G151600 Populus trichocarpa HOM05D005911 ORTHO05D007565 2.6e-13 79.7 95 43.2
AagrBONN_evm.TU.Sc2ySwM_117.291 Anthoceros agrestis HOM05D005911 ORTHO05D007565 2.9e-12 76.3 162 33.3
TAR371G0927 Trochodendron aralioides HOM05D005911 ORTHO05D007565 1.4e-11 73.9 137 38.7
CBR_g27891 Chara braunii HOM05D005911 ORTHO05D007565 7.8e-10 68.2 138 32.6
Mapoly0044s0080 Marchantia polymorpha HOM05D005911 ORTHO05D007565 3.9e-09 65.9 108 37.0
FAN27G2671 Fragaria x ananassa HOM05D005911 ORTHO05D007565 4.3e-08 62.4 58 56.9
CDE02G3889 Ceratophyllum demersum HOM05D005911 ORTHO05D007565 1.8e-06 57.0 46 65.2


User provided reference genes

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