Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR039130 Cardamine hirsuta HOM05D002302 ORTHO05D012841 2.5e-29 131.3 61 100.0
CARHR287850 Cardamine hirsuta HOM05D002302 ORTHO05D012841 6.3e-25 116.7 61 88.5
CARHR154610 Cardamine hirsuta HOM05D002302 ORTHO05D012841 1.4e-21 105.5 61 82.0
CARHR099570 Cardamine hirsuta HOM05D002302 ORTHO05D012841 2.5e-21 104.8 61 80.3
CARHR215990 Cardamine hirsuta HOM05D002302 ORTHO05D012841 4.2e-21 104.0 61 80.3
CARHR261530 Cardamine hirsuta HOM05D002302 ORTHO05D012841 7.2e-21 103.2 61 80.3
CARHR262840 Cardamine hirsuta HOM05D002302 ORTHO05D012841 1.2e-20 102.4 57 82.5
CARHR115620 Cardamine hirsuta HOM05D002302 ORTHO05D012841 3.6e-20 100.9 61 80.3
CARHR183690 Cardamine hirsuta HOM05D002302 ORTHO05D012841 7.9e-20 99.8 61 73.8
CARHR224740 Cardamine hirsuta HOM05D002302 ORTHO05D012841 1.8e-19 98.6 58 79.3
CARHR030230 Cardamine hirsuta HOM05D002302 ORTHO05D012841 3.0e-19 97.8 53 83.0
CARHR287560 Cardamine hirsuta HOM05D002302 ORTHO05D012841 3.0e-19 97.8 54 81.5
CARHR117590 Cardamine hirsuta HOM05D002302 ORTHO05D012841 3.3e-18 94.4 58 72.4
CARHR258080 Cardamine hirsuta HOM05D002302 ORTHO05D012841 1.3e-17 92.4 61 75.4
CARHR262350 Cardamine hirsuta HOM05D002302 ORTHO05D012841 2.2e-17 91.7 49 83.7
CARHR115690 Cardamine hirsuta HOM05D002302 ORTHO05D012841 2.4e-16 88.2 61 72.1
CARHR217220 Cardamine hirsuta HOM05D002302 ORTHO05D012841 3.1e-16 87.8 57 73.7
CARHR215310 Cardamine hirsuta HOM05D002302 ORTHO05D012841 6.9e-16 86.7 50 78.0
CARHR104730 Cardamine hirsuta HOM05D002302 ORTHO05D012841 5.0e-14 80.5 47 76.6
AL3G48730 Arabidopsis lyrata HOM05D002302 ORTHO05D002728 2.1e-12 75.1 49 69.4
Carub.0003s3381 Capsella rubella HOM05D002302 ORTHO05D002728 6.1e-12 73.6 49 69.4
AT2G19520 Arabidopsis thaliana HOM05D002302 ORTHO05D002728 3.0e-11 71.2 49 67.3
A09p12420 Brassica napus HOM05D002302 ORTHO05D002728 2.0e-10 68.6 57 63.2
BraA09t36887Z Brassica rapa HOM05D002302 ORTHO05D002728 2.0e-10 68.6 57 63.2
BcaC04g22846 Brassica carinata HOM05D002302 ORTHO05D002728 5.7e-10 67.0 50 68.0
C09p14700 Brassica napus HOM05D002302 ORTHO05D002728 5.7e-10 67.0 50 68.0
BolC9t54373H Brassica oleracea HOM05D002302 ORTHO05D002728 5.7e-10 67.0 50 68.0
A09p59290 Brassica napus HOM05D002302 ORTHO05D002728 2.2e-09 65.1 49 61.2
BraA09t41311Z Brassica rapa HOM05D002302 ORTHO05D002728 2.2e-09 65.1 49 61.2
C08p42550 Brassica napus HOM05D002302 ORTHO05D002728 6.3e-09 63.5 43 67.4
BolC8t51816H Brassica oleracea HOM05D002302 ORTHO05D002728 6.3e-09 63.5 43 67.4
Thhalv10022653m.g Eutrema salsugineum HOM05D002302 ORTHO05D002728 8.2e-09 63.2 41 70.7
Sp3g32900 Schrenkiella parvula HOM05D002302 ORTHO05D002728 8.2e-09 63.2 41 70.7
Aa31LG8G16540 Aethionema arabicum HOM05D002302 ORTHO05D002728 4.1e-08 60.8 41 68.3
BcaC07g41249 Brassica carinata HOM05D002302 ORTHO05D002728 4.1e-08 60.8 47 59.6
CARHR109950 Cardamine hirsuta HOM05D002302 ORTHO05D002728 9.1e-08 59.7 35 71.4
BcaB08g34870 Brassica carinata HOM05D002302 ORTHO05D002728 1.2e-07 59.3 35 71.4
Dinv36769 Davidia involucrata HOM05D002302 ORTHO05D002728 1.2e-07 59.3 41 61.0
Solyc07g039320.2 Solanum lycopersicum HOM05D002302 ORTHO05D002728 2.0e-07 58.5 47 53.2
Sopen07g018510 Solanum pennellii HOM05D002302 ORTHO05D002728 2.0e-07 58.5 47 53.2
Sabra06G0120200 Salix brachista HOM05D002302 ORTHO05D002728 2.6e-07 58.2 47 57.4
BcaC06g36592 Brassica carinata HOM05D002302 ORTHO05D002728 3.4e-07 57.8 36 72.2
A07p01270 Brassica napus HOM05D002302 ORTHO05D002728 3.4e-07 57.8 41 65.9
C07p02560 Brassica napus HOM05D002302 ORTHO05D002728 3.4e-07 57.8 36 72.2
BolC7t40654H Brassica oleracea HOM05D002302 ORTHO05D002728 3.4e-07 57.8 36 72.2
BraA07t27917Z Brassica rapa HOM05D002302 ORTHO05D002728 3.4e-07 57.8 41 65.9
Duzib150G1344 Durio zibethinus HOM05D002302 ORTHO05D002728 3.4e-07 57.8 43 62.8
Duzib187G1375 Durio zibethinus HOM05D002302 ORTHO05D002728 3.4e-07 57.8 43 62.8
Gohir.A06G072700 Gossypium hirsutum HOM05D002302 ORTHO05D002728 3.4e-07 57.8 43 62.8
Gohir.D06G071300 Gossypium hirsutum HOM05D002302 ORTHO05D002728 3.4e-07 57.8 43 62.8
Gorai.010G083100 Gossypium raimondii HOM05D002302 ORTHO05D002728 3.4e-07 57.8 43 62.8
Thecc.09G089000 Theobroma cacao HOM05D002302 ORTHO05D002728 3.4e-07 57.8 43 62.8
Manes.16G101900 Manihot esculenta HOM05D002302 ORTHO05D002728 4.5e-07 57.4 43 62.8
Nn8g38863 Nelumbo nucifera HOM05D002302 ORTHO05D002728 7.7e-07 56.6 49 55.1
BcaB03g16740 Brassica carinata HOM05D002302 ORTHO05D002728 1.7e-06 55.5 49 53.1
CiPaw.03G215000 Carya illinoinensis HOM05D002302 ORTHO05D002728 1.7e-06 55.5 43 55.8
Nn6g35481 Nelumbo nucifera HOM05D002302 ORTHO05D002728 1.7e-06 55.5 41 63.4
THA.LOC104814621 Tarenaya hassleriana HOM05D002302 ORTHO05D002728 1.7e-06 55.5 42 54.8
Gohir.A05G030000 Gossypium hirsutum HOM05D002302 ORTHO05D002728 2.2e-06 55.1 43 60.5
Gohir.D05G031400 Gossypium hirsutum HOM05D002302 ORTHO05D002728 2.2e-06 55.1 43 60.5
Gorai.009G031600 Gossypium raimondii HOM05D002302 ORTHO05D002728 2.2e-06 55.1 43 60.5
Potri.006G151800 Populus trichocarpa HOM05D002302 ORTHO05D002728 2.2e-06 55.1 43 58.1
CAN.G1389.18 Capsicum annuum HOM05D002302 ORTHO05D012841 2.9e-06 54.7 36 61.1
Duzib235G0707 Durio zibethinus HOM05D002302 ORTHO05D002728 2.9e-06 54.7 34 61.8
MD02G1079600 Malus domestica HOM05D002302 ORTHO05D002728 2.9e-06 54.7 35 62.9
MD15G1207100 Malus domestica HOM05D002302 ORTHO05D002728 2.9e-06 54.7 35 62.9
Manes.03G033900 Manihot esculenta HOM05D002302 ORTHO05D002728 2.9e-06 54.7 43 58.1
Prupe.7G209600 Prunus persica HOM05D002302 ORTHO05D002728 2.9e-06 54.7 35 60.0
Rhsim05G0020600 Rhododendron simsii HOM05D002302 ORTHO05D002728 2.9e-06 54.7 50 52.0
Sabra18G0059100 Salix brachista HOM05D002302 ORTHO05D002728 2.9e-06 54.7 43 55.8
CSS0021791 Camellia sinensis var. sinensis HOM05D002302 ORTHO05D002728 3.8e-06 54.3 49 49.0
AUR62029071 Chenopodium quinoa HOM05D002302 ORTHO05D002728 3.8e-06 54.3 31 67.7
AUR62033965 Chenopodium quinoa HOM05D002302 ORTHO05D002728 3.8e-06 54.3 31 67.7
FAN19G1641 Fragaria x ananassa HOM05D002302 ORTHO05D002728 3.8e-06 54.3 48 50.0
Lj6g0024794 Lotus japonicus HOM05D002302 ORTHO05D002728 3.8e-06 54.3 29 72.4
Medtr2g039250 Medicago truncatula HOM05D002302 ORTHO05D002728 3.8e-06 54.3 29 72.4
Peaxi162Scf00038g01525 Petunia axillaris HOM05D002302 ORTHO05D002728 3.8e-06 54.3 31 67.7
Hund25925 Selenicereus undatus HOM05D002302 ORTHO05D002728 3.8e-06 54.3 31 67.7
Cpa.g.sc61.44 Carica papaya HOM05D002302 ORTHO05D002728 5.0e-06 53.9 48 52.1
Haze_25917 Corylus avellana HOM05D002302 ORTHO05D002728 5.0e-06 53.9 38 63.2
Potri.018G068200 Populus trichocarpa HOM05D002302 ORTHO05D002728 5.0e-06 53.9 43 53.5
RcHm_v2.0_Chr2g0093391 Rosa chinensis HOM05D002302 ORTHO05D002728 5.0e-06 53.9 28 75.0
Hund20856 Selenicereus undatus HOM05D002302 ORTHO05D002728 5.0e-06 53.9 36 66.7
TWI32G0634 Tripterygium wilfordii HOM05D002302 ORTHO05D002728 5.0e-06 53.9 42 59.5
Actinidia39716 Actinidia chinensis HOM05D002302 ORTHO05D002728 6.5e-06 53.5 42 59.5
CANSAT56G1114 Cannabis sativa HOM05D002302 ORTHO05D002728 6.5e-06 53.5 40 60.0
Cfa003080 Carpinus fangiana HOM05D002302 ORTHO05D002728 6.5e-06 53.5 38 60.5
HanXRQChr09g0276451 Helianthus annuus HOM05D002302 ORTHO05D002728 6.5e-06 53.5 40 55.0
Lsat_1_v5_gn_4_95200 Lactuca sativa HOM05D002302 ORTHO05D002728 6.5e-06 53.5 40 60.0
MBI04_g31159_MAGBIO Magnolia biondii HOM05D002302 ORTHO05D002728 6.5e-06 53.5 40 60.0
Medtr2g100090 Medicago truncatula HOM05D002302 ORTHO05D002728 6.5e-06 53.5 28 71.4
Oeu011894.1 Olea europaea HOM05D002302 ORTHO05D002728 6.5e-06 53.5 32 68.8
Psat5g293880 Pisum sativum HOM05D002302 ORTHO05D002728 6.5e-06 53.5 33 60.6
EL10Ac7g15764 Beta vulgaris HOM05D002302 ORTHO05D002728 8.5e-06 53.1 28 75.0
Ca_02156_v3 Cicer arietinum L. HOM05D002302 ORTHO05D002728 8.5e-06 53.1 29 69.0
Cc06_g11420 Coffea canephora HOM05D002302 ORTHO05D002728 8.5e-06 53.1 29 72.4
Gohir.A06G190500 Gossypium hirsutum HOM05D002302 ORTHO05D002728 8.5e-06 53.1 28 71.4
Gohir.D06G198900 Gossypium hirsutum HOM05D002302 ORTHO05D002728 8.5e-06 53.1 28 71.4
Gorai.010G231800 Gossypium raimondii HOM05D002302 ORTHO05D002728 8.5e-06 53.1 28 71.4
Oeu026748.1 Olea europaea HOM05D002302 ORTHO05D002728 8.5e-06 53.1 29 69.0
PSO210G1681 Papaver somniferum HOM05D002302 ORTHO05D002728 8.5e-06 53.1 40 57.5
PSO210G6824 Papaver somniferum HOM05D002302 ORTHO05D002728 8.5e-06 53.1 40 57.5
PGR102G0205 Punica granatum HOM05D002302 ORTHO05D002728 8.5e-06 53.1 40 60.0
TPR.G257 Trifolium pratense HOM05D002302 ORTHO05D002728 8.5e-06 53.1 29 69.0
TWI34G1584 Tripterygium wilfordii HOM05D002302 ORTHO05D002728 8.5e-06 53.1 42 59.5


User provided reference genes

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