Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR039120 Cardamine hirsuta HOM05D004512 ORTHO05D005355 5.2e-59 230.7 107 100.0
AT3G18410 Arabidopsis thaliana HOM05D004512 ORTHO05D005355 4.4e-58 227.6 107 98.1
Thhalv10022379m.g Eutrema salsugineum HOM05D004512 ORTHO05D005355 5.8e-58 227.3 106 98.1
CARHR093770 Cardamine hirsuta HOM05D004512 ORTHO05D005355 7.5e-58 226.9 107 98.1
BraA01t03675Z Brassica rapa HOM05D004512 ORTHO05D005355 9.8e-58 226.5 107 97.2
Carub.0003s1819 Capsella rubella HOM05D004512 ORTHO05D005355 9.8e-58 226.5 107 97.2
Thhalv10011884m.g Eutrema salsugineum HOM05D004512 ORTHO05D005355 1.3e-57 226.1 107 97.2
Sp1g36030 Schrenkiella parvula HOM05D004512 ORTHO05D005355 1.3e-57 226.1 107 97.2
AL3G31700 Arabidopsis lyrata HOM05D004512 ORTHO05D005355 2.2e-57 225.3 107 97.2
BcaC09g48802 Brassica carinata HOM05D004512 ORTHO05D005355 2.9e-57 224.9 107 96.3
A05p31210 Brassica napus HOM05D004512 ORTHO05D005355 2.9e-57 224.9 107 98.1
C01p45770 Brassica napus HOM05D004512 ORTHO05D005355 2.9e-57 224.9 107 96.3
BolC1t04540H Brassica oleracea HOM05D004512 ORTHO05D005355 2.9e-57 224.9 107 96.3
BraA05t21962Z Brassica rapa HOM05D004512 ORTHO05D005355 2.9e-57 224.9 107 98.1
BcaC01g03699 Brassica carinata HOM05D004512 ORTHO05D005355 3.7e-57 224.6 107 96.3
BolC3t17241H Brassica oleracea HOM05D004512 ORTHO05D005355 3.7e-57 224.6 107 96.3
BcaC05g28630 Brassica carinata HOM05D004512 ORTHO05D005355 6.4e-57 223.8 107 97.2
C05p47340 Brassica napus HOM05D004512 ORTHO05D005355 6.4e-57 223.8 107 97.2
BolC5t33461H Brassica oleracea HOM05D004512 ORTHO05D005355 6.4e-57 223.8 107 97.2
Aa31LG8G5240 Aethionema arabicum HOM05D004512 ORTHO05D005355 1.1e-56 223.0 107 96.3
A03p40660 Brassica napus HOM05D004512 ORTHO05D005355 1.1e-56 223.0 107 95.3
BraA03t13222Z Brassica rapa HOM05D004512 ORTHO05D005355 1.1e-56 223.0 107 95.3
BcaB04g20765 Brassica carinata HOM05D004512 ORTHO05D005355 1.4e-56 222.6 107 95.3
BcaB04g18985 Brassica carinata HOM05D004512 ORTHO05D005355 1.9e-56 222.2 107 94.4
Aa31LG10G4840 Aethionema arabicum HOM05D004512 ORTHO05D005355 4.1e-56 221.1 109 95.4
BcaB06g25886 Brassica carinata HOM05D004512 ORTHO05D005355 5.4e-56 220.7 107 96.3
THA.LOC104820396 Tarenaya hassleriana HOM05D004512 ORTHO05D005355 9.2e-56 219.9 107 94.4
THA.LOC104821841 Tarenaya hassleriana HOM05D004512 ORTHO05D005355 9.2e-56 219.9 107 93.5
AT1G49140 Arabidopsis thaliana HOM05D004512 ORTHO05D005355 4.6e-55 217.6 104 95.2
Carub.0001s3830 Capsella rubella HOM05D004512 ORTHO05D005355 4.6e-55 217.6 104 95.2
Sp3g16520 Schrenkiella parvula HOM05D004512 ORTHO05D005355 6.0e-55 217.2 107 93.5
AL1G56000 Arabidopsis lyrata HOM05D004512 ORTHO05D005355 2.3e-54 215.3 104 94.2
A01p35940 Brassica napus HOM05D004512 ORTHO05D005355 3.6e-52 208.0 97 96.9
C03p49450 Brassica napus HOM05D004512 ORTHO05D005355 1.4e-51 206.1 97 95.9
vmacro12793 Vaccinium macrocarpon HOM05D004512 ORTHO05D005355 3.4e-50 201.4 107 86.9
Cfa019782 Carpinus fangiana HOM05D004512 ORTHO05D005355 1.7e-49 199.1 107 84.1
Haze_18669 Corylus avellana HOM05D004512 ORTHO05D005355 1.7e-49 199.1 107 84.1
Atru.chr9.839 Acer truncatum HOM05D004512 ORTHO05D005355 3.2e-48 194.9 107 83.2
Cpa.g.sc3.515 Carica papaya HOM05D004512 ORTHO05D005355 4.1e-48 194.5 107 80.4
Duzib205G0602 Durio zibethinus HOM05D004512 ORTHO05D005355 5.4e-48 194.1 107 83.2
Duzib205G1322 Durio zibethinus HOM05D004512 ORTHO05D005355 5.4e-48 194.1 107 83.2
Manes.01G011800 Manihot esculenta HOM05D004512 ORTHO05D005355 1.2e-47 193.0 107 82.2
Lj2g0019547 Lotus japonicus HOM05D004512 ORTHO05D005355 1.6e-47 192.6 107 78.5
Rhsim12G0143400 Rhododendron simsii HOM05D004512 ORTHO05D005355 1.6e-47 192.6 108 83.3
Thecc.03G034700 Theobroma cacao HOM05D004512 ORTHO05D005355 2.1e-47 192.2 107 80.4
Gohir.D08G105800 Gossypium hirsutum HOM05D004512 ORTHO05D005355 2.7e-47 191.8 107 81.3
Gorai.004G113100 Gossypium raimondii HOM05D004512 ORTHO05D005355 2.7e-47 191.8 107 81.3
Prupe.5G221100 Prunus persica HOM05D004512 ORTHO05D005355 2.7e-47 191.8 107 77.6
Gohir.A09G047600 Gossypium hirsutum HOM05D004512 ORTHO05D005355 3.5e-47 191.4 107 80.4
Gohir.D09G048700 Gossypium hirsutum HOM05D004512 ORTHO05D005355 3.5e-47 191.4 107 80.4
Duzib068G0917 Durio zibethinus HOM05D004512 ORTHO05D005355 4.6e-47 191.0 107 79.4
Manes.05G137500 Manihot esculenta HOM05D004512 ORTHO05D005355 4.6e-47 191.0 107 80.4
TPR.G27937 Trifolium pratense HOM05D004512 ORTHO05D005355 1.7e-46 189.1 106 80.2
Ca_25495_v3 Cicer arietinum L. HOM05D004512 ORTHO05D005355 2.3e-46 188.7 107 79.4
Cc04_g07140 Coffea canephora HOM05D004512 ORTHO05D005355 2.3e-46 188.7 107 84.1
Gohir.A08G094600 Gossypium hirsutum HOM05D004512 ORTHO05D005355 2.3e-46 188.7 107 80.4
Oeu046994.1 Olea europaea HOM05D004512 ORTHO05D005355 2.3e-46 188.7 106 84.0
CiPaw.15G130400 Carya illinoinensis HOM05D004512 ORTHO05D005355 5.1e-46 187.6 107 80.4
Potri.012G056900 Populus trichocarpa HOM05D004512 ORTHO05D005355 6.6e-46 187.2 102 80.4
Lalb_Chr22g0353061 Lupinus albus HOM05D004512 ORTHO05D005355 1.1e-45 186.4 107 79.4
EL10Ac5g11436 Beta vulgaris HOM05D004512 ORTHO05D005355 1.9e-45 185.7 107 79.4
CiPaw.16G085900 Carya illinoinensis HOM05D004512 ORTHO05D005355 1.9e-45 185.7 107 78.5
Potri.015G054700 Populus trichocarpa HOM05D004512 ORTHO05D005355 2.5e-45 185.3 102 79.4
PGR142G1335 Punica granatum HOM05D004512 ORTHO05D005355 2.5e-45 185.3 107 78.5
Sabra12G0040400 Salix brachista HOM05D004512 ORTHO05D005355 3.3e-45 184.9 102 80.4
CSS0004107 Camellia sinensis var. sinensis HOM05D004512 ORTHO05D005355 5.6e-45 184.1 102 81.4
Ciclev10022984m.g Citrus clementina HOM05D004512 ORTHO05D005355 7.3e-45 183.7 106 80.2
FvH4_5g12140 Fragaria vesca HOM05D004512 ORTHO05D005355 7.3e-45 183.7 108 78.7
FAN04G1546 Fragaria x ananassa HOM05D004512 ORTHO05D005355 7.3e-45 183.7 108 78.7
FAN08G0397 Fragaria x ananassa HOM05D004512 ORTHO05D005355 7.3e-45 183.7 108 78.7
FAN13G2727 Fragaria x ananassa HOM05D004512 ORTHO05D005355 7.3e-45 183.7 108 78.7
FAN18G2044 Fragaria x ananassa HOM05D004512 ORTHO05D005355 7.3e-45 183.7 108 78.7
QL10p025263 Quercus lobata HOM05D004512 ORTHO05D005355 7.3e-45 183.7 107 79.4
Glyma.09G184500 Glycine max HOM05D004512 ORTHO05D005355 9.5e-45 183.3 107 77.6
MD06G1215900 Malus domestica HOM05D004512 ORTHO05D005355 9.5e-45 183.3 105 74.3
Hund02392 Selenicereus undatus HOM05D004512 ORTHO05D005355 9.5e-45 183.3 108 79.6
MSTRG.22945 Avicennia marina HOM05D004512 ORTHO05D005355 1.2e-44 183.0 102 81.4
VMungo0464G1721 Vigna mungo HOM05D004512 ORTHO05D005355 1.2e-44 183.0 107 77.6
AUR62025859 Chenopodium quinoa HOM05D004512 ORTHO05D005355 1.6e-44 182.6 107 76.6
AUR62029861 Chenopodium quinoa HOM05D004512 ORTHO05D005355 1.6e-44 182.6 107 76.6
MELO3C002086.2 Cucumis melo HOM05D004512 ORTHO05D005355 1.6e-44 182.6 107 79.4
CsaV3_1G006620 Cucumis sativus L. HOM05D004512 ORTHO05D005355 1.6e-44 182.6 107 79.4
Eucgr.K02221 Eucalyptus grandis HOM05D004512 ORTHO05D005355 1.6e-44 182.6 107 76.6
FAN18G1297 Fragaria x ananassa HOM05D004512 ORTHO05D005355 2.8e-44 181.8 103 77.7
Lalb_Chr24g0397761 Lupinus albus HOM05D004512 ORTHO05D005355 3.6e-44 181.4 107 77.6
Nitab4.5_0000208g0260 Nicotiana tabacum HOM05D004512 ORTHO05D005355 3.6e-44 181.4 108 79.6
Phvul.004G157200 Phaseolus vulgaris HOM05D004512 ORTHO05D005355 3.6e-44 181.4 107 75.7
RcHm_v2.0_Chr7g0185431 Rosa chinensis HOM05D004512 ORTHO05D005355 3.6e-44 181.4 107 76.6
Gorai.006G061400 Gossypium raimondii HOM05D004512 ORTHO05D005355 4.7e-44 181.0 97 83.5
Nitab4.5_0006638g0020 Nicotiana tabacum HOM05D004512 ORTHO05D005355 4.7e-44 181.0 108 78.7
Sed0004773 Sechium edule HOM05D004512 ORTHO05D005355 6.2e-44 180.6 106 78.3
PGSC0003DMG400023110 Solanum tuberosum HOM05D004512 ORTHO05D005355 6.2e-44 180.6 108 77.8
MD14G1226500 Malus domestica HOM05D004512 ORTHO05D005355 8.1e-44 180.3 98 77.6
Aqoxy3G00301 Aquilegia oxysepala HOM05D004512 ORTHO05D005355 1.1e-43 179.9 104 78.8
arahy.Tifrunner.gnm1.ann1.HI5GUI Arachis hypogaea HOM05D004512 ORTHO05D005355 1.4e-43 179.5 97 82.5
arahy.Tifrunner.gnm1.ann1.K20T5Q Arachis hypogaea HOM05D004512 ORTHO05D005355 1.4e-43 179.5 97 82.5
Migut.I00347 Erythranthe guttata HOM05D004512 ORTHO05D005355 1.4e-43 179.5 102 80.4
Peaxi162Scf00634g00116 Petunia axillaris HOM05D004512 ORTHO05D005355 1.8e-43 179.1 104 79.8
SalBow5G1005 Salvia bowleyana HOM05D004512 ORTHO05D005355 2.4e-43 178.7 102 78.4
Sopen12g018390 Solanum pennellii HOM05D004512 ORTHO05D005355 2.4e-43 178.7 108 76.9
TWI81G1036 Tripterygium wilfordii HOM05D004512 ORTHO05D005355 2.4e-43 178.7 105 76.2
Hma1.2p1_0653F.1_g196320 Hydrangea macrophylla HOM05D004512 ORTHO05D005355 4.0e-43 177.9 102 80.4
Glyma.07G091500 Glycine max HOM05D004512 ORTHO05D005355 8.9e-43 176.8 97 81.4
SGA_v2.0_scaffold25G10991 Striga asiatica HOM05D004512 ORTHO05D005355 8.9e-43 176.8 102 79.4
SGA_v2.0_scaffold19G08815 Striga asiatica HOM05D004512 ORTHO05D005355 1.2e-42 176.4 107 75.7
Psat1g037680 Pisum sativum HOM05D004512 ORTHO05D005355 1.5e-42 176.0 96 81.2
CSS0044395 Camellia sinensis var. sinensis HOM05D004512 ORTHO05D005355 2.0e-42 175.6 96 82.3
Medtr6g084520 Medicago truncatula HOM05D004512 ORTHO05D005355 2.6e-42 175.3 97 78.4
DCAR_011353 Daucus carota HOM05D004512 ORTHO05D005355 7.6e-42 173.7 106 76.4
Sc12g0007720 Simmondsia chinensis HOM05D004512 ORTHO05D005355 7.6e-42 173.7 107 72.9
Sed0021676 Sechium edule HOM05D004512 ORTHO05D005355 1.3e-41 172.9 97 81.4
HPP92_020802 Vanilla planifolia HOM05D004512 ORTHO05D005355 1.7e-41 172.6 107 72.0
TAR374G1478 Trochodendron aralioides HOM05D004512 ORTHO05D005355 2.2e-41 172.2 102 75.5
CANSAT80G1137 Cannabis sativa HOM05D004512 ORTHO05D005355 2.9e-41 171.8 99 78.8
CANSAT80G2616 Cannabis sativa HOM05D004512 ORTHO05D005355 2.9e-41 171.8 99 78.8
CAN.G121.2 Capsicum annuum HOM05D004512 ORTHO05D005355 2.9e-41 171.8 97 79.4
CAN.G790.56 Capsicum annuum HOM05D004512 ORTHO05D005355 3.8e-41 171.4 97 78.4
ClCG00G005470 Citrullus lanatus HOM05D004512 ORTHO05D005355 2.4e-40 168.7 96 80.2
ClCG04G011140 Citrullus lanatus HOM05D004512 ORTHO05D005355 2.4e-40 168.7 96 80.2
unitig_26.g9674 Utricularia gibba HOM05D004512 ORTHO05D005355 9.2e-40 166.8 101 76.2
Solyc12g036790.2 Solanum lycopersicum HOM05D004512 ORTHO05D005355 1.2e-39 166.4 97 76.3
DCAR_015141 Daucus carota HOM05D004512 ORTHO05D005355 2.1e-39 165.6 99 76.8
PSO782G2824 Papaver somniferum HOM05D004512 ORTHO05D005355 1.0e-38 163.3 95 74.7
TAR371G0608 Trochodendron aralioides HOM05D004512 ORTHO05D005355 1.0e-38 163.3 96 77.1
Zm00001eb024750 Zea mays HOM05D004512 ORTHO05D005355 1.3e-38 162.9 104 69.2
unitig_749.g13425 Utricularia gibba HOM05D004512 ORTHO05D005355 3.9e-38 161.4 101 74.3
CDE12G0498 Ceratophyllum demersum HOM05D004512 ORTHO05D005355 5.1e-38 161.0 101 74.3
Zm00001eb224900 Zea mays HOM05D004512 ORTHO05D005355 8.6e-38 160.2 104 68.3
ATR1125G038 Amborella trichopoda HOM05D004512 ORTHO05D005355 1.9e-37 159.1 93 76.3
Lsat_1_v5_gn_8_144301 Lactuca sativa HOM05D004512 ORTHO05D005355 5.6e-37 157.5 99 72.7
ECA233G5146 Erigeron canadensis HOM05D004512 ORTHO05D005355 7.3e-37 157.1 105 70.5
HanXRQChr08g0226081 Helianthus annuus HOM05D004512 ORTHO05D005355 3.6e-36 154.8 98 72.4
TWI60G0557 Tripterygium wilfordii HOM05D004512 ORTHO05D005355 8.1e-36 153.7 94 71.3
Nitab4.5_0007985g0060 Nicotiana tabacum HOM05D004512 ORTHO05D005355 5.2e-35 151.0 89 74.2
COL.COLO4_05967 Corchorus olitorius HOM05D004512 ORTHO05D005355 1.6e-31 139.4 78 80.8
HanXRQChr16g0517341 Helianthus annuus HOM05D004512 ORTHO05D005355 1.3e-28 129.8 85 70.6
AagrBONN_evm.TU.Sc2ySwM_117.17 Anthoceros agrestis HOM05D004512 ORTHO05D005355 1.8e-27 125.9 92 62.0
AagrBONN_evm.TU.Sc2ySwM_228.463 Anthoceros agrestis HOM05D004512 ORTHO05D005355 3.1e-27 125.2 92 62.0
Pp3c9_26150 Physcomitrium patens HOM05D004512 ORTHO05D005355 4.0e-27 124.8 89 64.0
Nn3g17841 Nelumbo nucifera HOM05D004512 ORTHO05D005355 5.3e-27 124.4 68 76.5
Mapoly0004s0055 Marchantia polymorpha HOM05D004512 ORTHO05D005355 5.8e-26 120.9 84 66.7
MD14G1197200 Malus domestica HOM05D004512 ORTHO05D005355 5.4e-24 114.4 74 70.3
MD15G1306200 Malus domestica HOM05D004512 ORTHO05D005355 1.6e-23 112.8 74 63.5
CAN.G133.16 Capsicum annuum HOM05D004512 ORTHO05D005355 2.1e-23 112.5 91 61.5
CAN.G519.12 Capsicum annuum HOM05D004512 ORTHO05D005355 2.7e-23 112.1 72 69.4
BcaB02g11300 Brassica carinata HOM05D004512 ORTHO05D005355 3.9e-22 108.2 76 68.4
CBR_g39222 Chara braunii HOM05D006171 ORTHO05D007294 3.3e-21 105.1 86 55.8
Prupe.2G045100 Prunus persica HOM05D004512 ORTHO05D005355 9.6e-21 103.6 70 65.7
Prupe.1G218000 Prunus persica HOM05D004512 ORTHO05D005355 2.1e-20 102.4 103 49.5
SMO169G0039 Selaginella moellendorffii HOM05D004512 ORTHO05D005355 4.8e-20 101.3 84 52.4
Os10g0576000 Oryza sativa ssp. japonica HOM05D004512 ORTHO05D005355 5.3e-19 97.8 59 69.5
MCO12G018 Micromonas commoda HOM05D004512 ORTHO05D005355 7.6e-18 94.0 94 50.0
Duzib084G0409 Durio zibethinus HOM05D004512 ORTHO05D005355 3.0e-14 82.0 54 70.4
SEGI_01620 Sequoiadendron giganteum HOM05D004512 ORTHO05D005355 1.8e-11 72.8 50 68.0
Nitab4.5_0001194g0030 Nicotiana tabacum HOM05D004512 ORTHO05D005355 1.4e-08 63.2 61 55.7
Dinv09796 Davidia involucrata HOM05D004512 ORTHO05D005355 2.5e-08 62.4 37 75.7
PRCOL_00001312 Prasinoderma coloniale HOM05D004512 ORTHO05D005355 3.2e-08 62.0 70 42.9
Actinidia35087 Actinidia chinensis HOM05D004512 ORTHO05D005355 6.0e-07 57.8 37 73.0
GSVIVG01008282001 Vitis vinifera HOM05D004512 ORTHO05D005355 8.7e-06 53.9 28 78.6


User provided reference genes

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