Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR038180 Cardamine hirsuta HOM05D007068 ORTHO05D008590 9.7e-245 849.7 436 100.0
AL1G55220 Arabidopsis lyrata HOM05D007068 ORTHO05D008590 1.7e-201 706.1 437 84.4
Carub.0001s3769 Capsella rubella HOM05D007068 ORTHO05D008590 4.0e-198 694.9 436 83.5
AT1G48580 Arabidopsis thaliana HOM05D007068 ORTHO05D008590 2.3e-190 669.1 456 78.5
Thhalv10011472m.g Eutrema salsugineum HOM05D007068 ORTHO05D008590 6.0e-178 627.9 449 75.3
Sp1g35530 Schrenkiella parvula HOM05D007068 ORTHO05D008590 4.9e-172 608.2 449 75.1
A06p04350 Brassica napus HOM05D007068 ORTHO05D008590 1.5e-168 596.7 440 75.9
BcaB07g33743 Brassica carinata HOM05D007068 ORTHO05D008590 1.2e-167 593.6 451 73.6
C06p03180 Brassica napus HOM05D007068 ORTHO05D008590 7.6e-165 584.3 452 73.5
BraA06t23639Z Brassica rapa HOM05D007068 ORTHO05D008590 4.9e-164 581.6 469 71.9
BcaC08g43059 Brassica carinata HOM05D007068 ORTHO05D008590 1.9e-160 569.7 472 68.9
BolC6t35436H Brassica oleracea HOM05D007068 ORTHO05D008590 1.9e-160 569.7 472 68.9
Aa31LG10G5220 Aethionema arabicum HOM05D007068 ORTHO05D008590 2.9e-132 476.1 449 60.4
Atru.chr9.1734 Acer truncatum HOM05D007068 ORTHO05D008590 3.2e-70 270.0 454 41.4
Thecc.03G056900 Theobroma cacao HOM05D007068 ORTHO05D008590 4.4e-64 249.6 450 40.9
Potri.012G047000 Populus trichocarpa HOM05D007068 ORTHO05D008590 8.3e-63 245.4 454 39.2
Duzib084G0836 Durio zibethinus HOM05D007068 ORTHO05D008590 1.4e-62 244.6 456 39.0
Cfa019656 Carpinus fangiana HOM05D007068 ORTHO05D008590 1.0e-60 238.4 448 36.8
COL.COLO4_04377 Corchorus olitorius HOM05D007068 ORTHO05D008590 4.3e-59 233.0 449 39.4
Sed0003101 Sechium edule HOM05D007068 ORTHO05D008590 1.5e-56 224.6 471 35.5
Cpa.g.sc3.397 Carica papaya HOM05D007068 ORTHO05D008590 3.4e-56 223.4 459 38.8
Eucgr.K02273 Eucalyptus grandis HOM05D007068 ORTHO05D008590 4.4e-56 223.0 451 35.5
Sabra12G0033000 Salix brachista HOM05D007068 ORTHO05D008590 4.4e-56 223.0 489 36.6
Haze_18849 Corylus avellana HOM05D007068 ORTHO05D008590 2.9e-55 220.3 477 33.3
TAR622G0435 Trochodendron aralioides HOM05D007068 ORTHO05D008590 1.1e-54 218.4 474 35.9
MELO3C017359.2 Cucumis melo HOM05D007068 ORTHO05D008590 9.2e-54 215.3 462 35.9
CsaV3_1G004370 Cucumis sativus L. HOM05D007068 ORTHO05D008590 1.2e-53 214.9 459 35.1
CiPaw.16G093400 Carya illinoinensis HOM05D007068 ORTHO05D008590 3.5e-53 213.4 455 35.4
Dinv17551 Davidia involucrata HOM05D007068 ORTHO05D008590 3.5e-53 213.4 426 38.5
Gohir.A07G061700 Gossypium hirsutum HOM05D007068 ORTHO05D008590 6.0e-53 212.6 451 37.3
Gohir.D07G066400 Gossypium hirsutum HOM05D007068 ORTHO05D008590 6.0e-53 212.6 452 37.6
Gorai.001G070000 Gossypium raimondii HOM05D007068 ORTHO05D008590 1.7e-52 211.1 454 37.2
Actinidia39838 Actinidia chinensis HOM05D007068 ORTHO05D008590 3.0e-52 210.3 449 36.1
Rhsim08G0124500 Rhododendron simsii HOM05D007068 ORTHO05D008590 8.6e-52 208.8 431 36.0
CANSAT80G0386 Cannabis sativa HOM05D007068 ORTHO05D008590 1.1e-51 208.4 437 36.8
Hma1.2p1_0669F.1_g200120 Hydrangea macrophylla HOM05D007068 ORTHO05D008590 1.1e-51 208.4 473 35.5
Oeu031766.1 Olea europaea HOM05D007068 ORTHO05D008590 1.6e-50 204.5 463 34.6
ClCG06G014310 Citrullus lanatus HOM05D007068 ORTHO05D008590 2.8e-50 203.8 473 34.9
CSS0009831 Camellia sinensis var. sinensis HOM05D007068 ORTHO05D008590 4.7e-50 203.0 457 37.2
SalBow1G5613 Salvia bowleyana HOM05D007068 ORTHO05D008590 3.1e-49 200.3 440 35.2
Aqoxy3G00060 Aquilegia oxysepala HOM05D007068 ORTHO05D008590 2.2e-47 194.1 450 36.9
GSVIVG01011540001 Vitis vinifera HOM05D007068 ORTHO05D008590 4.9e-47 193.0 437 32.7
Lalb_Chr16g0386991 Lupinus albus HOM05D007068 ORTHO05D008590 8.4e-47 192.2 451 33.0
Nn3g18277 Nelumbo nucifera HOM05D007068 ORTHO05D008590 1.1e-46 191.8 493 32.5
Ca_17189_v3 Cicer arietinum L. HOM05D007068 ORTHO05D008590 1.9e-46 191.0 451 32.6
PSO017G3869 Papaver somniferum HOM05D007068 ORTHO05D008590 3.2e-46 190.3 441 34.9
Manes.14G171300 Manihot esculenta HOM05D007068 ORTHO05D008590 4.2e-46 189.9 438 35.4
PGSC0003DMG400005672 Solanum tuberosum HOM05D007068 ORTHO05D008590 5.4e-46 189.5 457 31.7
Prupe.5G233500 Prunus persica HOM05D007068 ORTHO05D008590 1.6e-45 188.0 360 38.3
RcHm_v2.0_Chr7g0178441 Rosa chinensis HOM05D007068 ORTHO05D008590 3.5e-45 186.8 443 35.9
VMungo0251G0101 Vigna mungo HOM05D007068 ORTHO05D008590 1.3e-44 184.9 438 32.9
Migut.D01541 Erythranthe guttata HOM05D007068 ORTHO05D008590 2.3e-44 184.1 473 31.5
Medtr8g107330 Medicago truncatula HOM05D007068 ORTHO05D008590 5.1e-44 183.0 441 32.0
PSO478G2297 Papaver somniferum HOM05D007068 ORTHO05D008590 8.7e-44 182.2 439 35.1
CAN.G843.56 Capsicum annuum HOM05D007068 ORTHO05D008590 7.3e-43 179.1 443 32.1
Solyc03g118700.3 Solanum lycopersicum HOM05D007068 ORTHO05D008590 7.3e-43 179.1 452 31.0
SGA_v2.0_scaffold36G14383 Striga asiatica HOM05D007068 ORTHO05D008590 9.6e-43 178.7 451 31.5
Cc04_g06260 Coffea canephora HOM05D007068 ORTHO05D008590 1.3e-42 178.3 468 33.1
QL10p029594 Quercus lobata HOM05D007068 ORTHO05D008590 1.6e-42 177.9 415 33.7
Psat7g003560 Pisum sativum HOM05D007068 ORTHO05D008590 4.8e-42 176.4 438 31.1
Nitab4.5_0004556g0050 Nicotiana tabacum HOM05D007068 ORTHO05D008590 6.2e-42 176.0 454 33.0
FvH4_5g17330 Fragaria vesca HOM05D007068 ORTHO05D008590 1.1e-41 175.3 442 34.4
FAN18G2889 Fragaria x ananassa HOM05D007068 ORTHO05D008590 1.1e-41 175.3 442 34.4
Nitab4.5_0003401g0040 Nicotiana tabacum HOM05D007068 ORTHO05D008590 1.4e-41 174.9 444 33.6
arahy.Tifrunner.gnm1.ann1.N01HH5 Arachis hypogaea HOM05D007068 ORTHO05D008590 5.8e-40 169.5 307 37.8
Peaxi162Scf00683g00453 Petunia axillaris HOM05D007068 ORTHO05D008590 1.3e-39 168.3 450 31.6
FAN13G0457 Fragaria x ananassa HOM05D007068 ORTHO05D008590 1.7e-39 167.9 445 35.1
Lsat_1_v5_gn_2_14700 Lactuca sativa HOM05D007068 ORTHO05D008590 6.4e-39 166.0 475 31.8
Glyma.08G054400 Glycine max HOM05D007068 ORTHO05D008590 4.2e-38 163.3 443 30.9
Lj4g0019727 Lotus japonicus HOM05D007068 ORTHO05D008590 5.4e-38 162.9 452 31.9
TPR.G1401 Trifolium pratense HOM05D007068 ORTHO05D008590 1.2e-37 161.8 460 30.7
Phvul.002G330100 Phaseolus vulgaris HOM05D007068 ORTHO05D008590 1.6e-37 161.4 460 30.7
MD06G1227000 Malus domestica HOM05D007068 ORTHO05D008590 6.0e-37 159.5 289 37.4
arahy.Tifrunner.gnm1.ann1.ZH8P6D Arachis hypogaea HOM05D007068 ORTHO05D008590 1.3e-36 158.3 247 40.5
ECA238G2622 Erigeron canadensis HOM05D007068 ORTHO05D008590 2.3e-36 157.5 361 33.5
MBI13_g47078_MAGBIO Magnolia biondii HOM05D007068 ORTHO05D008590 3.0e-36 157.1 272 38.6
DCAR_014504 Daucus carota HOM05D007068 ORTHO05D008590 2.5e-35 154.1 444 32.9
FAN04G2769 Fragaria x ananassa HOM05D007068 ORTHO05D008590 2.5e-35 154.1 444 34.0
Peaxi162Scf00683g00454 Petunia axillaris HOM05D007068 ORTHO05D008590 4.3e-35 153.3 438 30.1
Hma1.2p1_0669F.1_g200130 Hydrangea macrophylla HOM05D007068 ORTHO05D008590 6.2e-34 149.4 463 31.1
EL10Ac4g08480 Beta vulgaris HOM05D007068 ORTHO05D008590 5.5e-30 136.3 306 33.0
HPP92_002012 Vanilla planifolia HOM05D007068 ORTHO05D008590 1.0e-28 132.1 470 29.8
Hund10357 Selenicereus undatus HOM05D007068 ORTHO05D008590 5.6e-27 126.3 225 36.9
VMungo0251G0567 Vigna mungo HOM05D007068 ORTHO05D008590 1.3e-26 125.2 248 35.1
AUR62037972 Chenopodium quinoa HOM05D007068 ORTHO05D008590 1.6e-26 124.8 286 34.6
Ah.06g187490 Amaranthus hybridus HOM05D007068 ORTHO05D008590 2.4e-25 120.9 225 34.7
Ciclev10008793m.g Citrus clementina HOM05D007068 ORTHO05D008590 4.0e-25 120.2 133 49.6
CDE02G3810 Ceratophyllum demersum HOM05D007068 ORTHO05D008590 1.2e-24 118.6 255 34.5
ATR0618G302 Amborella trichopoda HOM05D007068 ORTHO05D008590 4.5e-24 116.7 139 46.8
Sopen03g037660 Solanum pennellii HOM05D007068 ORTHO05D008590 9.3e-22 109.0 201 36.8
SMO164G0186 Selaginella moellendorffii HOM05D007068 ORTHO05D008590 2.1e-21 107.8 175 36.6
Sc10g0009180 Simmondsia chinensis HOM05D007068 ORTHO05D008590 2.1e-21 107.8 256 35.9
Mapoly0060s0110 Marchantia polymorpha HOM05D007068 ORTHO05D008590 6.0e-21 106.3 188 34.6
SEGI_36605 Sequoiadendron giganteum HOM05D007068 ORTHO05D008590 6.0e-21 106.3 117 48.7
SMO164G0105 Selaginella moellendorffii HOM05D020476 ORTHO05D008590 5.7e-19 99.8 173 34.7
HanXRQChr14g0431751 Helianthus annuus HOM05D007068 ORTHO05D008590 5.3e-17 93.2 79 55.7
AagrBONN_evm.TU.Sc2ySwM_362.2609 Anthoceros agrestis HOM05D007068 ORTHO05D008590 2.6e-16 90.9 148 37.8
unitig_8.g4506 Utricularia gibba HOM05D007068 ORTHO05D008590 2.2e-15 87.8 453 24.5
vmacro17572 Vaccinium macrocarpon HOM05D007068 ORTHO05D008590 9.3e-14 82.4 58 67.2
Pp3c3_22100 Physcomitrium patens HOM05D007068 ORTHO05D008590 2.1e-13 81.3 164 33.5
Pp3c3_22103 Physcomitrium patens HOM05D007068 ORTHO05D008590 2.1e-13 81.3 164 33.5
FAN08G2700 Fragaria x ananassa HOM05D007068 ORTHO05D008590 6.1e-13 79.7 108 42.6
Zm00001eb304630 Zea mays HOM05D007068 ORTHO05D008590 1.3e-12 78.6 365 25.5
arahy.Tifrunner.gnm1.ann1.USF1F6 Arachis hypogaea HOM05D007068 ORTHO05D008590 2.4e-09 67.8 56 58.9
VMungo1215G1321 Vigna mungo HOM05D007068 ORTHO05D008590 5.9e-08 63.2 89 38.2
Carub.0006s1097 Capsella rubella HOM05D000032 ORTHO05D114360 6.5e-07 59.7 45 60.0


User provided reference genes

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