Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR038160 Cardamine hirsuta HOM05D006919 ORTHO05D008705 3.1e-116 421.8 211 100.0
Thhalv10012210m.g Eutrema salsugineum HOM05D006919 ORTHO05D008705 2.9e-106 388.7 202 95.0
AT1G48550 Arabidopsis thaliana HOM05D006919 ORTHO05D008705 8.6e-106 387.1 202 94.6
AL1G55190 Arabidopsis lyrata HOM05D006919 ORTHO05D008705 1.1e-105 386.7 202 94.6
Carub.0001s3766 Capsella rubella HOM05D006919 ORTHO05D008705 4.3e-105 384.8 202 94.1
BcaC08g43045 Brassica carinata HOM05D006919 ORTHO05D008705 1.6e-104 382.9 202 92.6
C06p03070 Brassica napus HOM05D006919 ORTHO05D008705 1.6e-104 382.9 202 92.6
BolC6t35427H Brassica oleracea HOM05D006919 ORTHO05D008705 1.6e-104 382.9 202 92.6
BraA06t23646Z Brassica rapa HOM05D006919 ORTHO05D008705 1.6e-104 382.9 201 93.5
BcaB07g33748 Brassica carinata HOM05D006919 ORTHO05D008705 2.1e-104 382.5 202 93.1
Sp1g35490 Schrenkiella parvula HOM05D006919 ORTHO05D008705 2.1e-104 382.5 200 94.0
A06p04410 Brassica napus HOM05D006919 ORTHO05D008705 6.1e-104 380.9 201 93.0
Aa31LG10G5250 Aethionema arabicum HOM05D006919 ORTHO05D008705 1.3e-101 373.2 203 90.6
THA.LOC104820349 Tarenaya hassleriana HOM05D006919 ORTHO05D008705 5.2e-87 324.7 197 81.2
Atru.chr9.1714 Acer truncatum HOM05D006919 ORTHO05D008705 1.2e-83 313.5 194 76.8
Potri.015G037600 Populus trichocarpa HOM05D006919 ORTHO05D008705 4.3e-81 305.1 194 76.3
Ciclev10010588m.g Citrus clementina HOM05D006919 ORTHO05D008705 5.6e-81 304.7 199 73.4
Phvul.004G149400 Phaseolus vulgaris HOM05D006919 ORTHO05D008705 5.6e-81 304.7 194 75.8
PGR083G2730 Punica granatum HOM05D006919 ORTHO05D008705 5.6e-81 304.7 195 73.8
Actinidia18895 Actinidia chinensis HOM05D006919 ORTHO05D008705 9.6e-81 303.9 193 73.6
CSS0007871 Camellia sinensis var. sinensis HOM05D006919 ORTHO05D008705 9.6e-81 303.9 193 74.1
Duzib205G1348 Durio zibethinus HOM05D006919 ORTHO05D008705 1.6e-80 303.1 195 72.8
Thecc.03G055400 Theobroma cacao HOM05D006919 ORTHO05D008705 1.6e-80 303.1 193 75.1
Phvul.004G150300 Phaseolus vulgaris HOM05D006919 ORTHO05D008705 2.1e-80 302.8 194 75.3
Dinv08205 Davidia involucrata HOM05D006919 ORTHO05D008705 2.8e-80 302.4 194 75.3
TWI81G0447 Tripterygium wilfordii HOM05D006919 ORTHO05D008705 3.6e-80 302.0 194 74.2
MD06G1227700 Malus domestica HOM05D006919 ORTHO05D008705 6.2e-80 301.2 194 72.2
Prupe.5G234100 Prunus persica HOM05D006919 ORTHO05D008705 6.2e-80 301.2 194 74.2
Atru.chr9.1680 Acer truncatum HOM05D006919 ORTHO05D008705 1.4e-79 300.1 201 73.1
CiPaw.15G143800 Carya illinoinensis HOM05D006919 ORTHO05D008705 1.4e-79 300.1 194 73.7
CsaV3_1G007200 Cucumis sativus L. HOM05D006919 ORTHO05D008705 1.8e-79 299.7 196 73.0
Medtr6g069620 Medicago truncatula HOM05D006919 ORTHO05D008705 1.8e-79 299.7 193 75.1
Gorai.001G068200 Gossypium raimondii HOM05D006919 ORTHO05D008705 4.0e-79 298.5 194 73.2
COL.COLO4_04912 Corchorus olitorius HOM05D006919 ORTHO05D008705 5.2e-79 298.1 194 72.7
Gohir.A07G060000 Gossypium hirsutum HOM05D006919 ORTHO05D008705 5.2e-79 298.1 194 72.7
QL10p029823 Quercus lobata HOM05D006919 ORTHO05D008705 5.2e-79 298.1 194 74.2
Gohir.D07G064700 Gossypium hirsutum HOM05D006919 ORTHO05D008705 2.0e-78 296.2 194 72.7
RcHm_v2.0_Chr7g0178261 Rosa chinensis HOM05D006919 ORTHO05D008705 2.6e-78 295.8 194 71.6
FvH4_5g17430 Fragaria vesca HOM05D006919 ORTHO05D008705 7.6e-78 294.3 194 71.6
Psat1g030800 Pisum sativum HOM05D006919 ORTHO05D008705 1.3e-77 293.5 203 70.4
Lalb_Chr24g0398171 Lupinus albus HOM05D006919 ORTHO05D008705 1.7e-77 293.1 195 73.3
TAR629G0573 Trochodendron aralioides HOM05D006919 ORTHO05D008705 2.4e-76 289.3 194 72.7
GSVIVG01008449001 Vitis vinifera HOM05D006919 ORTHO05D008705 2.4e-76 289.3 194 69.6
CSS0013537 Camellia sinensis var. sinensis HOM05D006919 ORTHO05D008705 5.4e-76 288.1 193 72.0
Cpa.g.sc3.392 Carica papaya HOM05D006919 ORTHO05D008705 7.1e-76 287.7 202 68.8
CANSAT80G0223 Cannabis sativa HOM05D006919 ORTHO05D008705 9.3e-76 287.3 204 67.6
TPR.G8644 Trifolium pratense HOM05D006919 ORTHO05D008705 9.3e-76 287.3 193 72.0
Glyma.07G102800 Glycine max HOM05D006919 ORTHO05D008705 1.2e-75 287.0 197 72.1
EL10Ac4g07782 Beta vulgaris HOM05D006919 ORTHO05D008705 3.5e-75 285.4 194 70.6
arahy.Tifrunner.gnm1.ann1.CTKR59 Arachis hypogaea HOM05D006919 ORTHO05D008705 4.6e-75 285.0 194 70.6
Nn4g24311 Nelumbo nucifera HOM05D006919 ORTHO05D008705 1.0e-74 283.9 193 70.5
AUR62015799 Chenopodium quinoa HOM05D006919 ORTHO05D008705 1.3e-74 283.5 193 71.0
Aqoxy3G04092 Aquilegia oxysepala HOM05D006919 ORTHO05D008705 3.9e-74 282.0 194 69.1
arahy.Tifrunner.gnm1.ann1.95HZXM Arachis hypogaea HOM05D006919 ORTHO05D008705 5.1e-74 281.6 194 70.6
AUR62020416 Chenopodium quinoa HOM05D006919 ORTHO05D008705 6.6e-74 281.2 193 71.0
MSTRG.9306 Avicennia marina HOM05D006919 ORTHO05D008705 7.3e-73 277.7 193 68.4
Glyma.U031615 Glycine max HOM05D006919 ORTHO05D008705 1.6e-72 276.6 180 73.9
Sopen03g037620 Solanum pennellii HOM05D006919 ORTHO05D008705 1.6e-72 276.6 194 67.5
CAN.G843.52 Capsicum annuum HOM05D006919 ORTHO05D008705 2.1e-72 276.2 194 68.0
Migut.D01529 Erythranthe guttata HOM05D006919 ORTHO05D008705 3.6e-72 275.4 194 68.0
FAN04G0116 Fragaria x ananassa HOM05D006919 ORTHO05D008705 3.6e-72 275.4 183 70.5
FAN08G0969 Fragaria x ananassa HOM05D006919 ORTHO05D008705 3.6e-72 275.4 183 70.5
FAN13G2797 Fragaria x ananassa HOM05D006919 ORTHO05D008705 4.8e-72 275.0 183 70.5
Peaxi162Scf00314g00331 Petunia axillaris HOM05D006919 ORTHO05D008705 4.8e-72 275.0 194 67.0
PGSC0003DMG402005674 Solanum tuberosum HOM05D006919 ORTHO05D008705 4.8e-72 275.0 204 64.2
ECA233G0189 Erigeron canadensis HOM05D006919 ORTHO05D008705 1.8e-71 273.1 191 68.6
Lj2g0027212 Lotus japonicus HOM05D006919 ORTHO05D008705 1.8e-71 273.1 182 72.0
Sed0003421 Sechium edule HOM05D006919 ORTHO05D008705 1.8e-71 273.1 181 71.8
Migut.D01538 Erythranthe guttata HOM05D006919 ORTHO05D008705 6.9e-71 271.2 194 67.0
Cc04_g06200 Coffea canephora HOM05D006919 ORTHO05D008705 1.2e-70 270.4 208 61.5
ATR1100G039 Amborella trichopoda HOM05D006919 ORTHO05D008705 2.0e-70 269.6 198 65.7
HanXRQChr05g0142681 Helianthus annuus HOM05D006919 ORTHO05D008705 1.7e-69 266.5 194 67.5
Hund01978 Selenicereus undatus HOM05D006919 ORTHO05D008705 1.7e-69 266.5 186 69.4
VMungo0464G0753 Vigna mungo HOM05D006919 ORTHO05D008705 8.4e-69 264.2 194 68.6
Oeu026273.1 Olea europaea HOM05D006919 ORTHO05D008705 5.4e-68 261.5 192 66.7
PSO063G3076 Papaver somniferum HOM05D006919 ORTHO05D008705 1.2e-67 260.4 195 66.2
Eucgr.B00878 Eucalyptus grandis HOM05D006919 ORTHO05D008705 3.5e-67 258.8 181 66.9
Nitab4.5_0012026g0010 Nicotiana tabacum HOM05D006919 ORTHO05D008705 3.5e-67 258.8 193 64.8
Solyc03g118660.3 Solanum lycopersicum HOM05D006919 ORTHO05D008705 4.6e-67 258.5 181 66.3
Lsat_1_v5_gn_8_720 Lactuca sativa HOM05D006919 ORTHO05D008705 7.3e-65 251.1 180 66.7
Ca_25336_v3 Cicer arietinum L. HOM05D002609 ORTHO05D008705 1.3e-64 250.4 182 67.6
Ca_29640_v3 Cicer arietinum L. HOM05D002609 ORTHO05D008705 1.3e-64 250.4 182 67.6
HPP92_023812 Vanilla planifolia HOM05D006919 ORTHO05D008705 9.0e-63 244.2 193 61.7
PSO754G0044 Papaver somniferum HOM05D006919 ORTHO05D008705 2.4e-60 236.1 195 59.0
QL10p030230 Quercus lobata HOM05D006919 ORTHO05D008705 7.9e-59 231.1 153 71.9
FAN18G1663 Fragaria x ananassa HOM05D006919 ORTHO05D008705 1.0e-58 230.7 183 62.8
Manes.06G005400 Manihot esculenta HOM05D006919 ORTHO05D008705 1.0e-58 230.7 147 76.9
MBI09_g15241_MAGBIO Magnolia biondii HOM05D006919 ORTHO05D008705 1.8e-58 229.9 182 63.2
Nitab4.5_0013135g0010 Nicotiana tabacum HOM05D006919 ORTHO05D008705 6.7e-58 228.0 157 70.1
arahy.Tifrunner.gnm1.ann1.2R737Y Arachis hypogaea HOM05D006919 ORTHO05D008705 1.5e-57 226.9 194 60.8
arahy.Tifrunner.gnm1.ann1.54PB3V Arachis hypogaea HOM05D006919 ORTHO05D008705 1.6e-56 223.4 194 60.3
Mapoly0012s0164 Marchantia polymorpha HOM05D006919 ORTHO05D008705 6.9e-55 218.0 192 57.8
AagrBONN_evm.TU.Sc2ySwM_344.2286 Anthoceros agrestis HOM05D006919 ORTHO05D008705 2.6e-54 216.1 193 55.4
vmacro16410 Vaccinium macrocarpon HOM05D006919 ORTHO05D008705 3.5e-51 205.7 180 58.9
MELO3C002137.2 Cucumis melo HOM05D006919 ORTHO05D008705 1.3e-50 203.8 134 74.6
ClCG04G010590 Citrullus lanatus HOM05D006919 ORTHO05D008705 3.7e-48 195.7 192 54.7
Haze_18872 Corylus avellana HOM05D006919 ORTHO05D008705 4.8e-48 195.3 194 53.1
CDE08G0345 Ceratophyllum demersum HOM05D006919 ORTHO05D008705 1.1e-47 194.1 156 61.5
Pp3c1_6570 Physcomitrium patens HOM05D006919 ORTHO05D008705 1.4e-47 193.7 189 49.7
Eucgr.B00996 Eucalyptus grandis HOM05D006919 ORTHO05D008705 2.4e-47 193.0 181 53.6
Pp3c2_29770 Physcomitrium patens HOM05D006919 ORTHO05D008705 9.0e-47 191.0 189 47.6
AagrBONN_evm.TU.Sc2ySwM_228.5103 Anthoceros agrestis HOM05D006919 ORTHO05D008705 4.8e-40 168.7 183 47.5
SMO143G0218 Selaginella moellendorffii HOM05D006919 ORTHO05D008705 4.1e-39 165.6 143 58.7
CBR_g44935 Chara braunii HOM05D006919 ORTHO05D008705 5.1e-34 148.7 173 46.2
arahy.Tifrunner.gnm1.ann1.248BIT Arachis hypogaea HOM05D006919 ORTHO05D008705 4.5e-30 135.6 103 65.0
Lj9A419G30 Lonicera japonica HOM05D006919 ORTHO05D008705 3.6e-27 125.9 80 68.8
Rhsim12G0138200 Rhododendron simsii HOM05D006919 ORTHO05D008705 1.1e-25 120.9 192 38.5
RcHm_v2.0_Chr5g0035741 Rosa chinensis HOM05D006919 ORTHO05D008705 7.5e-17 91.7 56 71.4
CBR_g74660 Chara braunii HOM05D006919 ORTHO05D008705 5.3e-15 85.5 164 36.0
SEGI_02358 Sequoiadendron giganteum HOM05D006919 ORTHO05D008705 2.1e-11 73.6 57 57.9
CSS0046000 Camellia sinensis var. sinensis HOM05D006919 ORTHO05D004872 2.0e-06 57.0 36 69.4
ECA233G3510 Erigeron canadensis HOM05D015936 ORTHO05D022524 4.5e-06 55.8 44 54.5


User provided reference genes

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