Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR038150 Cardamine hirsuta HOM05D004562 ORTHO05D005435 0.0e+00 2075.4 1058 100.0
AL1G55180 Arabidopsis lyrata HOM05D004562 ORTHO05D005435 0.0e+00 1664.0 1074 81.5
Carub.0001s3765 Capsella rubella HOM05D004562 ORTHO05D005435 0.0e+00 1645.2 1078 80.1
Sp1g35480 Schrenkiella parvula HOM05D004562 ORTHO05D005435 0.0e+00 1625.5 1072 80.0
C06p03060 Brassica napus HOM05D004562 ORTHO05D005435 0.0e+00 1592.8 1063 78.7
BcaC08g43044 Brassica carinata HOM05D004562 ORTHO05D005435 0.0e+00 1590.5 1063 78.6
BolC6t35426H Brassica oleracea HOM05D004562 ORTHO05D005435 0.0e+00 1585.5 1063 78.6
Thhalv10011201m.g Eutrema salsugineum HOM05D004562 ORTHO05D005435 0.0e+00 1578.5 1078 77.6
A06p04420 Brassica napus HOM05D004562 ORTHO05D005435 0.0e+00 1573.5 1063 78.0
BcaB07g33749 Brassica carinata HOM05D004562 ORTHO05D005435 0.0e+00 1560.4 1067 77.1
BraA06t23647Z Brassica rapa HOM05D004562 ORTHO05D005435 0.0e+00 1558.5 1096 75.6
AT1G48540 Arabidopsis thaliana HOM05D004562 ORTHO05D005435 0.0e+00 1556.6 1022 81.3
Aa31LG10G5260 Aethionema arabicum HOM05D004562 ORTHO05D005435 0.0e+00 1386.3 1133 67.9
THA.LOC104820345 Tarenaya hassleriana HOM05D004562 ORTHO05D005435 0.0e+00 1297.7 1102 65.0
Thhalv10019973m.g Eutrema salsugineum HOM05D004562 ORTHO05D005435 0.0e+00 1268.4 1076 64.5
Sp3g16040 Schrenkiella parvula HOM05D004562 ORTHO05D005435 0.0e+00 1265.0 1076 64.3
Carub.0003s1765 Capsella rubella HOM05D004562 ORTHO05D005435 0.0e+00 1257.7 1076 63.6
BraA05t22020Z Brassica rapa HOM05D004562 ORTHO05D005435 0.0e+00 1247.6 1076 64.2
BcaC05g28736 Brassica carinata HOM05D004562 ORTHO05D005435 0.0e+00 1245.7 1078 64.0
BolC5t33574H Brassica oleracea HOM05D004562 ORTHO05D005435 0.0e+00 1245.7 1078 64.0
A05p31880 Brassica napus HOM05D004562 ORTHO05D005435 0.0e+00 1243.0 1078 64.1
BcaB06g25854 Brassica carinata HOM05D004562 ORTHO05D005435 0.0e+00 1237.6 1078 63.8
AL3G31090 Arabidopsis lyrata HOM05D004562 ORTHO05D005435 0.0e+00 1235.3 1089 63.0
C05p48370 Brassica napus HOM05D004562 ORTHO05D005435 0.0e+00 1231.1 1078 63.4
AT3G17920 Arabidopsis thaliana HOM05D004562 ORTHO05D005435 0.0e+00 1223.0 1077 63.0
Aa31LG8G4790 Aethionema arabicum HOM05D004562 ORTHO05D005435 0.0e+00 1157.5 1077 61.6
COL.COLO4_28896 Corchorus olitorius HOM05D004562 ORTHO05D005435 1.4e-284 983.4 1129 50.5
QL10p030682 Quercus lobata HOM05D004562 ORTHO05D005435 4.5e-280 968.4 1111 49.8
Dinv02642 Davidia involucrata HOM05D004562 ORTHO05D005435 1.0e-279 967.2 1136 49.3
Gorai.008G290800 Gossypium raimondii HOM05D004562 ORTHO05D005435 2.2e-279 966.1 1122 50.2
CARHR093250 Cardamine hirsuta HOM05D004562 ORTHO05D005435 3.8e-279 965.3 832 63.9
Cfa019638 Carpinus fangiana HOM05D004562 ORTHO05D005435 2.0e-275 953.0 1129 49.6
Ciclev10007290m.g Citrus clementina HOM05D004562 ORTHO05D005435 6.3e-274 948.0 1129 48.7
RcHm_v2.0_Chr7g0178201 Rosa chinensis HOM05D004562 ORTHO05D005435 2.9e-271 939.1 1118 48.6
CANSAT80G2549 Cannabis sativa HOM05D004562 ORTHO05D005435 3.0e-268 929.1 1112 48.9
FAN08G1802 Fragaria x ananassa HOM05D004562 ORTHO05D005435 2.0e-267 926.4 1123 48.4
FAN13G2245 Fragaria x ananassa HOM05D004562 ORTHO05D005435 2.8e-266 922.5 1120 48.1
FvH4_5g17490 Fragaria vesca HOM05D004562 ORTHO05D005435 6.3e-266 921.4 1112 48.8
FAN18G3714 Fragaria x ananassa HOM05D004562 ORTHO05D005435 8.3e-266 921.0 1112 48.8
MD14G1237500 Malus domestica HOM05D004562 ORTHO05D005435 4.1e-265 918.7 1108 47.6
MD06G1228300 Malus domestica HOM05D004562 ORTHO05D005435 5.4e-265 918.3 1104 47.6
FAN04G0449 Fragaria x ananassa HOM05D004562 ORTHO05D005435 2.9e-263 912.5 1119 48.2
Potri.015G036300 Populus trichocarpa HOM05D004562 ORTHO05D005435 6.6e-263 911.4 1099 47.9
TWI60G0891 Tripterygium wilfordii HOM05D004562 ORTHO05D005435 2.5e-262 909.4 1113 48.3
Medtr8g107440 Medicago truncatula HOM05D004562 ORTHO05D005435 5.6e-262 908.3 1104 48.6
PGR044G1246 Punica granatum HOM05D004562 ORTHO05D005435 2.1e-261 906.4 1101 47.2
Manes.06G004700 Manihot esculenta HOM05D004562 ORTHO05D005435 1.4e-260 903.7 1074 49.6
Sed0003970 Sechium edule HOM05D004562 ORTHO05D005435 6.8e-260 901.4 1112 47.8
Glyma.08G055400 Glycine max HOM05D004562 ORTHO05D005435 1.7e-258 896.7 1106 48.3
Sabra15G0029800 Salix brachista HOM05D004562 ORTHO05D005435 1.4e-257 893.6 1111 47.3
Ca_17180_v3 Cicer arietinum L. HOM05D004562 ORTHO05D005435 2.4e-257 892.9 1114 47.9
Lj4g0011431 Lotus japonicus HOM05D004562 ORTHO05D005435 1.3e-255 887.1 1113 47.3
Nn4g24285 Nelumbo nucifera HOM05D004562 ORTHO05D005435 2.3e-255 886.3 1123 46.8
Psat7g001240 Pisum sativum HOM05D004562 ORTHO05D005435 1.1e-254 884.0 1109 47.4
Gohir.D12G270500 Gossypium hirsutum HOM05D004562 ORTHO05D005435 1.6e-253 880.2 996 51.2
Glyma.05G247000 Glycine max HOM05D004562 ORTHO05D005435 2.8e-253 879.4 1109 47.6
Peaxi162Scf00314g00332 Petunia axillaris HOM05D004562 ORTHO05D005435 8.9e-252 874.4 1130 46.1
CsaV3_1G004480 Cucumis sativus L. HOM05D004562 ORTHO05D005435 1.2e-251 874.0 1107 46.9
arahy.Tifrunner.gnm1.ann1.WQ60SD Arachis hypogaea HOM05D004562 ORTHO05D005435 2.9e-250 869.4 1092 47.4
Sed0022497 Sechium edule HOM05D004562 ORTHO05D005435 3.7e-250 869.0 1124 45.9
CAN.G843.49 Capsicum annuum HOM05D004562 ORTHO05D005435 1.1e-249 867.5 1115 46.2
Lalb_Chr05g0221581 Lupinus albus HOM05D004562 ORTHO05D005435 1.1e-249 867.5 1107 46.1
Prupe.5G234800 Prunus persica HOM05D004562 ORTHO05D005435 4.1e-249 865.5 1008 49.0
Rhsim12G0137700 Rhododendron simsii HOM05D004562 ORTHO05D005435 4.1e-249 865.5 1138 45.5
Eucgr.K02277 Eucalyptus grandis HOM05D004562 ORTHO05D005435 1.2e-248 864.0 1127 46.8
Lalb_Chr09g0330331 Lupinus albus HOM05D004562 ORTHO05D005435 2.0e-248 863.2 1109 46.0
MBI13_g01852_MAGBIO Magnolia biondii HOM05D004562 ORTHO05D005435 3.5e-248 862.4 1148 45.8
PGSC0003DMG400005676 Solanum tuberosum HOM05D004562 ORTHO05D005435 1.3e-247 860.5 1124 45.6
GSVIVG01008458001 Vitis vinifera HOM05D004562 ORTHO05D005435 2.3e-247 859.8 1090 47.6
MELO3C017375.2 Cucumis melo HOM05D004562 ORTHO05D005435 2.1e-245 853.2 1026 48.1
TPR.G1465 Trifolium pratense HOM05D004562 ORTHO05D005435 4.7e-245 852.0 1084 47.0
Aqoxy3G00029 Aquilegia oxysepala HOM05D004562 ORTHO05D005435 5.8e-243 845.1 1136 45.2
Actinidia35140 Actinidia chinensis HOM05D004562 ORTHO05D005435 7.5e-243 844.7 1140 45.1
Cc04_g06100 Coffea canephora HOM05D004562 ORTHO05D005435 1.3e-242 844.0 1084 46.4
Sopen03g037570 Solanum pennellii HOM05D004562 ORTHO05D005435 3.7e-242 842.4 1117 45.3
Solyc03g118620.3 Solanum lycopersicum HOM05D004562 ORTHO05D005435 1.1e-241 840.9 1113 45.3
arahy.Tifrunner.gnm1.ann1.G227WQ Arachis hypogaea HOM05D004562 ORTHO05D005435 3.3e-238 829.3 1092 46.3
VMungo0251G1597 Vigna mungo HOM05D004562 ORTHO05D005435 1.2e-237 827.4 1108 44.2
Gohir.A12G270000 Gossypium hirsutum HOM05D004562 ORTHO05D005435 2.8e-237 826.2 960 50.3
Phvul.002G331100 Phaseolus vulgaris HOM05D004562 ORTHO05D005435 2.8e-237 826.2 964 49.3
Haze_18884 Corylus avellana HOM05D004562 ORTHO05D005435 8.1e-237 824.7 1131 46.2
Oeu026264.3 Olea europaea HOM05D004562 ORTHO05D005435 4.0e-236 822.4 1174 43.3
MSTRG.9309 Avicennia marina HOM05D004562 ORTHO05D005435 1.3e-234 817.4 1138 43.7
Thecc.03G058700 Theobroma cacao HOM05D004562 ORTHO05D005435 1.7e-234 817.0 1126 45.4
CiPaw.15G144500 Carya illinoinensis HOM05D004562 ORTHO05D005435 6.4e-234 815.1 937 49.9
EL10Ac8g19501 Beta vulgaris HOM05D004562 ORTHO05D005435 1.1e-233 814.3 1105 44.3
AUR62029906 Chenopodium quinoa HOM05D004562 ORTHO05D005435 3.2e-233 812.8 1117 44.0
vmacro16407 Vaccinium macrocarpon HOM05D004562 ORTHO05D005435 1.2e-232 810.8 1128 42.7
Ah.14g085940 Amaranthus hybridus HOM05D004562 ORTHO05D005435 3.9e-231 805.8 1120 44.1
PSO478G3379 Papaver somniferum HOM05D004562 ORTHO05D005435 5.1e-231 805.4 1141 45.1
AUR62033795 Chenopodium quinoa HOM05D004562 ORTHO05D005435 3.3e-230 802.7 1118 43.7
Nn3g18314 Nelumbo nucifera HOM05D004562 ORTHO05D005435 4.3e-230 802.4 1191 42.8
ClCG06G014190 Citrullus lanatus HOM05D004562 ORTHO05D005435 2.9e-226 789.6 1101 44.1
HanXRQChr09g0268071 Helianthus annuus HOM05D004562 ORTHO05D005435 8.4e-226 788.1 1094 44.2
Duzib205G1225 Durio zibethinus HOM05D004562 ORTHO05D005435 3.2e-225 786.2 1137 43.4
Sc12g0007950 Simmondsia chinensis HOM05D004562 ORTHO05D005435 2.3e-223 780.0 1065 44.7
PSO017G6436 Papaver somniferum HOM05D004562 ORTHO05D005435 2.5e-222 776.5 1141 44.3
ECA238G1924 Erigeron canadensis HOM05D004562 ORTHO05D005435 6.9e-220 768.5 1109 42.7
HanXRQChr02g0032401 Helianthus annuus HOM05D004562 ORTHO05D005435 1.3e-218 764.2 1084 43.4
ATR0753G019 Amborella trichopoda HOM05D004562 ORTHO05D005435 2.9e-218 763.1 1131 41.8
Lsat_1_v5_gn_2_14940 Lactuca sativa HOM05D004562 ORTHO05D005435 2.7e-216 756.5 1076 44.0
HPP92_016742 Vanilla planifolia HOM05D004562 ORTHO05D005435 1.5e-211 740.7 1125 41.6
CiPaw.16G096100 Carya illinoinensis HOM05D004562 ORTHO05D005435 2.0e-211 740.3 871 49.5
DCAR_011617 Daucus carota HOM05D004562 ORTHO05D005435 1.3e-205 721.1 1126 41.6
Gorai.005G132200 Gossypium raimondii HOM05D004562 ORTHO05D005435 1.2e-200 704.5 641 58.7
Gohir.D02G121900 Gossypium hirsutum HOM05D004562 ORTHO05D005435 3.0e-199 699.9 641 58.5
Lj5A159T41 Lonicera japonica HOM05D004562 ORTHO05D005435 2.5e-198 696.8 1156 40.0
TAR374G0462 Trochodendron aralioides HOM05D004562 ORTHO05D005435 4.8e-197 692.6 652 58.7
Zm00001eb008950 Zea mays HOM05D004562 ORTHO05D005435 6.9e-196 688.7 1105 40.7
Os03g0221800 Oryza sativa ssp. japonica HOM05D004562 ORTHO05D005435 2.6e-195 686.8 1126 40.4
CSS0019251 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 8.2e-189 665.2 658 55.8
Potri.012G045300 Populus trichocarpa HOM05D004562 ORTHO05D005435 1.3e-186 657.9 502 66.1
Migut.D01318 Erythranthe guttata HOM05D004562 ORTHO05D005435 1.4e-185 654.4 789 48.3
SalBow1G2489 Salvia bowleyana HOM05D004562 ORTHO05D005435 1.7e-181 641.0 645 55.5
SGA_v2.0_scaffold172G39021 Striga asiatica HOM05D004562 ORTHO05D005435 8.2e-181 638.6 797 48.1
Cpa.g.sc3.379 Carica papaya HOM05D004562 ORTHO05D005435 7.7e-179 632.1 646 56.5
Nitab4.5_0010397g0020 Nicotiana tabacum HOM05D004562 ORTHO05D005435 9.4e-177 625.2 448 68.8
Nitab4.5_0001264g0030 Nicotiana tabacum HOM05D004562 ORTHO05D005435 1.8e-175 620.9 539 60.5
Hund22308 Selenicereus undatus HOM05D004562 ORTHO05D005435 1.7e-170 604.4 865 44.7
Actinidia18882 Actinidia chinensis HOM05D004562 ORTHO05D005435 3.2e-169 600.1 908 42.8
Manes.14G172200 Manihot esculenta HOM05D004562 ORTHO05D005435 3.0e-167 593.6 868 42.9
Atru.chr9.1669 Acer truncatum HOM05D004562 ORTHO05D005435 1.1e-161 575.1 880 41.6
unitig_46.g18720 Utricularia gibba HOM05D004562 ORTHO05D005435 6.5e-154 549.3 660 49.2
CDE05G0309 Ceratophyllum demersum HOM05D004562 ORTHO05D005435 4.0e-151 540.0 1103 36.2
SEGI_15130 Sequoiadendron giganteum HOM05D004562 ORTHO05D005435 1.1e-148 531.9 930 39.2
Sabra12G0031500 Salix brachista HOM05D004562 ORTHO05D005435 2.0e-147 527.7 934 38.9
Pp3c10_10590 Physcomitrium patens HOM05D004562 ORTHO05D005435 3.7e-125 453.8 737 39.8
CSS0009282 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 3.2e-116 424.1 268 77.2
CSS0039239 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 3.2e-116 424.1 268 77.2
Mapoly0118s0042 Marchantia polymorpha HOM05D004562 ORTHO05D005435 1.5e-113 415.2 692 39.0
AagrBONN_evm.TU.Sc2ySwM_228.5527 Anthoceros agrestis HOM05D004562 ORTHO05D005435 1.3e-98 365.5 328 55.8
Gohir.A03G092940 Gossypium hirsutum HOM05D004562 ORTHO05D005435 1.6e-91 342.0 428 48.4
Gohir.A03G092980 Gossypium hirsutum HOM05D004562 ORTHO05D005435 5.5e-84 317.0 206 75.2
Hma1.2p1_0163F.1_g072990 Hydrangea macrophylla HOM05D004562 ORTHO05D005435 1.8e-82 312.0 694 33.1
CSS0012259 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 2.8e-72 278.1 592 35.0
CSS0042944 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 3.7e-72 277.7 592 34.8
CBR_g38780 Chara braunii HOM05D004562 ORTHO05D005435 3.9e-58 231.1 221 52.5
SHI19076 Sapria himalayana HOM05D004562 ORTHO05D005435 6.7e-50 203.8 142 71.8
Duzib084G0184 Durio zibethinus HOM05D004562 ORTHO05D005435 7.5e-49 200.3 599 31.9
SEGI_31258 Sequoiadendron giganteum HOM05D004562 ORTHO05D005435 1.1e-44 186.4 798 25.7
AUR62044432 Chenopodium quinoa HOM05D004562 ORTHO05D005435 6.1e-43 180.6 667 27.4
SHI19074 Sapria himalayana HOM05D004562 ORTHO05D005435 5.4e-39 167.5 148 59.5
CAN.G59.9 Capsicum annuum HOM05D004562 ORTHO05D005435 7.0e-39 167.2 192 52.1
CAN.G1490.14 Capsicum annuum HOM05D004562 ORTHO05D005435 1.7e-37 162.5 92 83.7
CAN.G1687.2 Capsicum annuum HOM05D004562 ORTHO05D005435 2.9e-29 135.2 157 52.9
SHI19075 Sapria himalayana HOM05D004562 ORTHO05D005435 5.0e-29 134.4 91 68.1
C03p70010 Brassica napus HOM05D004562 ORTHO05D005435 1.8e-26 125.9 115 58.3
C09p22450 Brassica napus HOM05D004562 ORTHO05D005435 4.6e-22 111.3 123 53.7
BolC3t19259H Brassica oleracea HOM05D004562 ORTHO05D005435 3.9e-21 108.2 111 55.0
BolC9t55163H Brassica oleracea HOM05D004562 ORTHO05D005435 6.6e-21 107.5 111 55.9
MCO11G516 Micromonas commoda HOM05D004562 ORTHO05D005435 9.5e-20 103.6 383 27.9
CAN.G22.26 Capsicum annuum HOM05D001423 ORTHO05D001412 4.0e-18 98.2 96 53.1
TAR374G0732 Trochodendron aralioides HOM05D004562 ORTHO05D005435 1.5e-17 96.3 177 32.2
PRCOL_00002225 Prasinoderma coloniale HOM05D004562 ORTHO05D005435 2.4e-15 89.0 342 26.3
SHI19073 Sapria himalayana HOM05D004562 ORTHO05D005435 7.0e-15 87.4 363 24.2
AagrBONN_evm.TU.Sc2ySwM_368.1004 Anthoceros agrestis HOM05D016773 ORTHO05D019668 2.2e-08 65.9 162 32.7
Mapoly0105s0058 Marchantia polymorpha HOM05D027721 ORTHO05D031191 2.4e-07 62.4 207 27.1


User provided reference genes

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