Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR038140 Cardamine hirsuta HOM05D005585 ORTHO05D006905 2.0e-189 665.6 333 100.0
AL1G55160 Arabidopsis lyrata HOM05D005585 ORTHO05D006905 1.9e-107 393.3 315 65.1
Thhalv10011732m.g Eutrema salsugineum HOM05D005585 ORTHO05D006905 9.4e-107 391.0 254 77.6
AT1G48510 Arabidopsis thaliana HOM05D005585 ORTHO05D006905 4.4e-104 382.1 336 61.0
Carub.0001s3764 Capsella rubella HOM05D005585 ORTHO05D006905 6.7e-97 358.2 334 59.6
Carub.0001s3763 Capsella rubella HOM05D005585 ORTHO05D006905 3.3e-96 355.9 336 58.9
Thhalv10021015m.g Eutrema salsugineum HOM05D005585 ORTHO05D006905 4.0e-73 279.3 347 45.5
BcaB08g34867 Brassica carinata HOM05D005585 ORTHO05D006905 3.4e-72 276.2 254 57.1
BcaC05g28739 Brassica carinata HOM05D005585 ORTHO05D006905 4.9e-71 272.3 325 48.3
BolC5t33576H Brassica oleracea HOM05D005585 ORTHO05D006905 4.9e-71 272.3 325 48.3
THA.LOC104821828 Tarenaya hassleriana HOM05D005585 ORTHO05D006905 8.3e-71 271.6 330 47.9
BcaC09g48755 Brassica carinata HOM05D005585 ORTHO05D006905 1.8e-70 270.4 293 50.5
Sp3g16030 Schrenkiella parvula HOM05D005585 ORTHO05D006905 9.2e-70 268.1 345 45.8
BraA01t03712Z Brassica rapa HOM05D005585 ORTHO05D006905 1.6e-69 267.3 342 47.4
C05p48400 Brassica napus HOM05D005585 ORTHO05D006905 2.7e-69 266.5 326 47.9
BraA05t22021Z Brassica rapa HOM05D005585 ORTHO05D006905 2.7e-69 266.5 342 45.9
CARHR093240 Cardamine hirsuta HOM05D005585 ORTHO05D006905 2.7e-69 266.5 342 45.6
A01p36480 Brassica napus HOM05D005585 ORTHO05D006905 3.5e-69 266.2 333 47.4
BcaB06g25853 Brassica carinata HOM05D005585 ORTHO05D006905 1.0e-68 264.6 338 46.4
A05p31890 Brassica napus HOM05D005585 ORTHO05D006905 1.3e-68 264.2 342 45.9
AT3G17910 Arabidopsis thaliana HOM05D005585 ORTHO05D006905 3.9e-68 262.7 280 50.0
C01p46240 Brassica napus HOM05D005585 ORTHO05D006905 3.9e-68 262.7 338 47.0
BolC1t04585H Brassica oleracea HOM05D005585 ORTHO05D006905 3.9e-68 262.7 338 47.0
Carub.0003s1764 Capsella rubella HOM05D005585 ORTHO05D006905 3.3e-67 259.6 272 50.7
BcaB04g20808 Brassica carinata HOM05D005585 ORTHO05D006905 1.6e-66 257.3 303 47.9
Aa31LG8G4780 Aethionema arabicum HOM05D005585 ORTHO05D006905 2.1e-66 256.9 333 44.7
AL3G31080 Arabidopsis lyrata HOM05D005585 ORTHO05D006905 3.6e-66 256.1 346 44.2
arahy.Tifrunner.gnm1.ann1.8TLB5V Arachis hypogaea HOM05D005585 ORTHO05D006905 3.1e-65 253.1 273 48.4
Prupe.5G234900 Prunus persica HOM05D005585 ORTHO05D006905 2.0e-64 250.4 324 46.3
CSS0043300 Camellia sinensis var. sinensis HOM05D005585 ORTHO05D006905 2.6e-64 250.0 278 46.8
Manes.06G004600 Manihot esculenta HOM05D005585 ORTHO05D006905 3.4e-64 249.6 329 46.5
arahy.Tifrunner.gnm1.ann1.E1YKD2 Arachis hypogaea HOM05D005585 ORTHO05D006905 5.8e-64 248.8 270 48.1
Ciclev10015784m.g Citrus clementina HOM05D005585 ORTHO05D006905 9.8e-64 248.1 274 47.4
PGSC0003DMG400005757 Solanum tuberosum HOM05D005585 ORTHO05D006905 2.2e-63 246.9 328 41.2
HanXRQChr06g0178071 Helianthus annuus HOM05D005585 ORTHO05D006905 4.9e-63 245.7 279 45.9
Cc04_g06090 Coffea canephora HOM05D005585 ORTHO05D006905 8.3e-63 245.0 330 41.8
CANSAT80G1087 Cannabis sativa HOM05D005585 ORTHO05D006905 1.1e-62 244.6 306 44.1
COL.COLO4_28892 Corchorus olitorius HOM05D005585 ORTHO05D006905 1.1e-62 244.6 281 48.0
Gorai.006G191400 Gossypium raimondii HOM05D005585 ORTHO05D006905 1.1e-62 244.6 303 43.9
Lalb_Chr14g0370621 Lupinus albus HOM05D005585 ORTHO05D006905 1.4e-62 244.2 304 44.7
Glyma.07G103200 Glycine max HOM05D005585 ORTHO05D006905 1.9e-62 243.8 311 42.4
Gohir.A09G175000 Gossypium hirsutum HOM05D005585 ORTHO05D006905 1.9e-62 243.8 301 43.5
CANSAT80G2587 Cannabis sativa HOM05D005585 ORTHO05D006905 2.4e-62 243.4 306 43.5
QL10p030702 Quercus lobata HOM05D005585 ORTHO05D006905 3.2e-62 243.0 317 44.5
Hund22311 Selenicereus undatus HOM05D005585 ORTHO05D006905 3.2e-62 243.0 337 41.5
Sc12g0007980 Simmondsia chinensis HOM05D005585 ORTHO05D006905 3.2e-62 243.0 292 43.2
Phvul.004G149700 Phaseolus vulgaris HOM05D005585 ORTHO05D006905 4.1e-62 242.7 310 41.9
Lj2g0015776 Lotus japonicus HOM05D005585 ORTHO05D006905 5.4e-62 242.3 304 44.1
TAR628G0421 Trochodendron aralioides HOM05D005585 ORTHO05D006905 5.4e-62 242.3 307 43.3
MD06G1228400 Malus domestica HOM05D005585 ORTHO05D006905 2.7e-61 240.0 282 45.7
Sed0009200 Sechium edule HOM05D005585 ORTHO05D006905 4.6e-61 239.2 269 45.4
FvH4_5g17500 Fragaria vesca HOM05D005585 ORTHO05D006905 6.0e-61 238.8 329 41.3
MD14G1237600 Malus domestica HOM05D005585 ORTHO05D006905 7.8e-61 238.4 289 46.7
TWI60G0738 Tripterygium wilfordii HOM05D005585 ORTHO05D006905 7.8e-61 238.4 302 42.1
Rhsim08G0150200 Rhododendron simsii HOM05D005585 ORTHO05D006905 1.0e-60 238.0 300 44.3
FAN08G0665 Fragaria x ananassa HOM05D005585 ORTHO05D006905 1.3e-60 237.7 329 41.0
Lsat_1_v5_gn_8_83620 Lactuca sativa HOM05D005585 ORTHO05D006905 3.0e-60 236.5 277 42.6
Thecc.03G059000 Theobroma cacao HOM05D005585 ORTHO05D006905 3.0e-60 236.5 326 42.6
Dinv20235 Davidia involucrata HOM05D005585 ORTHO05D006905 5.0e-60 235.7 306 44.1
ATR1153G069 Amborella trichopoda HOM05D005585 ORTHO05D006905 8.6e-60 235.0 314 40.8
Hma1.2p1_0163F.1_g072970 Hydrangea macrophylla HOM05D005585 ORTHO05D006905 8.6e-60 235.0 330 43.0
Lalb_Chr22g0353511 Lupinus albus HOM05D005585 ORTHO05D006905 8.6e-60 235.0 319 43.3
AUR62001019 Chenopodium quinoa HOM05D005585 ORTHO05D006905 1.5e-59 234.2 266 45.9
ECA236G2254 Erigeron canadensis HOM05D005585 ORTHO05D006905 1.5e-59 234.2 310 41.0
Oeu026263.1 Olea europaea HOM05D005585 ORTHO05D006905 1.5e-59 234.2 305 43.0
RcHm_v2.0_Chr7g0178161 Rosa chinensis HOM05D005585 ORTHO05D006905 1.5e-59 234.2 321 41.7
Solyc03g118610.4 Solanum lycopersicum HOM05D005585 ORTHO05D006905 1.9e-59 233.8 328 39.9
Nitab4.5_0001264g0050 Nicotiana tabacum HOM05D005585 ORTHO05D006905 2.5e-59 233.4 290 42.8
CiPaw.15G144600 Carya illinoinensis HOM05D005585 ORTHO05D006905 4.3e-59 232.6 298 44.3
Haze_18886 Corylus avellana HOM05D005585 ORTHO05D006905 9.5e-59 231.5 305 43.6
DCAR_003540 Daucus carota HOM05D005585 ORTHO05D006905 1.2e-58 231.1 319 42.6
Eucgr.B00886 Eucalyptus grandis HOM05D005585 ORTHO05D006905 1.2e-58 231.1 274 44.2
CsaV3_1G007220 Cucumis sativus L. HOM05D005585 ORTHO05D006905 1.6e-58 230.7 318 42.8
FAN04G2668 Fragaria x ananassa HOM05D005585 ORTHO05D006905 1.6e-58 230.7 330 40.3
Nn5g30598 Nelumbo nucifera HOM05D005585 ORTHO05D006905 2.8e-58 229.9 312 41.7
Potri.012G045200 Populus trichocarpa HOM05D005585 ORTHO05D006905 2.8e-58 229.9 337 41.2
Ca_25346_v3 Cicer arietinum L. HOM05D005585 ORTHO05D006905 4.7e-58 229.2 319 41.7
PGR044G1909 Punica granatum HOM05D005585 ORTHO05D006905 4.7e-58 229.2 337 40.1
GSVIVG01008457001 Vitis vinifera HOM05D005585 ORTHO05D006905 4.7e-58 229.2 284 42.3
Psat1g030240 Pisum sativum HOM05D005585 ORTHO05D006905 6.2e-58 228.8 293 43.3
MELO3C002139.2 Cucumis melo HOM05D005585 ORTHO05D006905 8.0e-58 228.4 318 41.5
Medtr6g069850 Medicago truncatula HOM05D005585 ORTHO05D006905 8.0e-58 228.4 318 38.7
Sopen03g037560 Solanum pennellii HOM05D005585 ORTHO05D006905 8.0e-58 228.4 328 39.6
ClCG04G010560 Citrullus lanatus HOM05D005585 ORTHO05D006905 1.1e-57 228.0 306 42.2
SalBow7G1179 Salvia bowleyana HOM05D005585 ORTHO05D006905 1.1e-57 228.0 324 39.5
Duzib068G1453 Durio zibethinus HOM05D005585 ORTHO05D006905 1.8e-57 227.3 281 44.8
Nitab4.5_0010397g0010 Nicotiana tabacum HOM05D005585 ORTHO05D006905 1.5e-56 224.2 321 39.6
vmacro08951 Vaccinium macrocarpon HOM05D005585 ORTHO05D006905 2.6e-56 223.4 317 40.1
FAN18G2151 Fragaria x ananassa HOM05D005585 ORTHO05D006905 3.4e-56 223.0 336 39.3
Sabra12G0031400 Salix brachista HOM05D005585 ORTHO05D006905 3.4e-56 223.0 303 40.9
TPR.G8624 Trifolium pratense HOM05D005585 ORTHO05D006905 3.4e-56 223.0 329 41.0
MSTRG.6190 Avicennia marina HOM05D005585 ORTHO05D006905 4.4e-56 222.6 329 38.3
EL10Ac4g09125 Beta vulgaris HOM05D005585 ORTHO05D006905 1.7e-55 220.7 312 41.0
CDE04G0750 Ceratophyllum demersum HOM05D001130 ORTHO05D006905 1.7e-55 220.7 309 40.5
Glyma.09G174400 Glycine max HOM05D005585 ORTHO05D006905 2.9e-55 219.9 242 45.5
Migut.I00267 Erythranthe guttata HOM05D005585 ORTHO05D006905 4.9e-55 219.2 299 38.8
Peaxi162Scf00314g00335 Petunia axillaris HOM05D005585 ORTHO05D006905 1.1e-54 218.0 243 45.3
HPP92_019169 Vanilla planifolia HOM05D005585 ORTHO05D006905 1.2e-53 214.5 281 42.7
VMungo0464G1491 Vigna mungo HOM05D005585 ORTHO05D006905 1.2e-53 214.5 235 44.7
PSO170G1171 Papaver somniferum HOM05D005585 ORTHO05D006905 3.5e-53 213.0 327 37.0
PSO017G0826 Papaver somniferum HOM05D005585 ORTHO05D006905 4.6e-53 212.6 339 37.2
Os03g0200700 Oryza sativa ssp. japonica HOM05D005585 ORTHO05D006905 1.7e-52 210.7 281 41.6
Aqoxy5G00867 Aquilegia oxysepala HOM05D005585 ORTHO05D006905 2.3e-52 210.3 310 39.7
Lj5C159G17 Lonicera japonica HOM05D005585 ORTHO05D006905 1.5e-51 207.6 234 47.4
AUR62004935 Chenopodium quinoa HOM05D005585 ORTHO05D006905 9.5e-51 204.9 227 45.4
Ah.06g192310 Amaranthus hybridus HOM05D005585 ORTHO05D008527 1.2e-50 204.5 245 42.9
unitig_27.g25108 Utricularia gibba HOM05D005585 ORTHO05D006905 3.6e-50 203.0 312 35.3
Hma1.2p1_0163F.1_g072980 Hydrangea macrophylla HOM05D005585 ORTHO05D006905 8.1e-50 201.8 234 46.6
Cpa.g.c34889 Carica papaya HOM05D005585 ORTHO05D006905 1.1e-49 201.4 225 48.9
TAR628G1367 Trochodendron aralioides HOM05D005585 ORTHO05D006905 1.1e-49 201.4 219 46.6
CAN.G843.48 Capsicum annuum HOM05D005585 ORTHO05D006905 2.0e-48 197.2 268 39.2
Aqoxy5G00865 Aquilegia oxysepala HOM05D005585 ORTHO05D006905 7.6e-48 195.3 246 41.9
Zm00001eb007820 Zea mays HOM05D005585 ORTHO05D006905 4.9e-47 192.6 245 41.2
Mapoly0094s0071 Marchantia polymorpha HOM05D005585 ORTHO05D006905 1.9e-38 164.1 287 34.8
Eucgr.B00986 Eucalyptus grandis HOM05D005585 ORTHO05D006905 2.4e-38 163.7 186 43.5
QL12p007232 Quercus lobata HOM05D005585 ORTHO05D006905 3.9e-36 156.4 389 30.3
SMO147G0391 Selaginella moellendorffii HOM05D005585 ORTHO05D006905 6.6e-36 155.6 289 33.2
Pp3c5_4480 Physcomitrium patens HOM05D005585 ORTHO05D006905 9.6e-35 151.8 329 31.0
SGA_v2.0_scaffold58G20371 Striga asiatica HOM05D005585 ORTHO05D006905 4.8e-34 149.4 128 53.1
Gohir.D09G170128 Gossypium hirsutum HOM05D005585 ORTHO05D006905 7.1e-30 135.6 167 41.3
Cpa.g.sc3.377 Carica papaya HOM05D005585 ORTHO05D006905 5.1e-28 129.4 308 33.1
AagrBONN_evm.TU.Sc2ySwM_340.176 Anthoceros agrestis HOM05D005585 ORTHO05D006905 4.3e-27 126.3 243 30.5
SEGI_34948 Sequoiadendron giganteum HOM05D005585 ORTHO05D006905 4.5e-24 116.3 159 34.6
BcaB04g20806 Brassica carinata HOM05D005585 ORTHO05D006905 2.9e-23 113.6 173 36.4
TAR628G1286 Trochodendron aralioides HOM05D005585 ORTHO05D006905 3.2e-22 110.2 134 42.5
Sp1g35470 Schrenkiella parvula HOM05D005585 ORTHO05D006905 3.5e-21 106.7 91 65.9
FAN13G1174 Fragaria x ananassa HOM05D005585 ORTHO05D006905 3.0e-20 103.6 133 44.4
SEGI_19570 Sequoiadendron giganteum HOM05D005585 ORTHO05D006905 2.1e-18 97.4 111 44.1
Thhalv10011895m.g Eutrema salsugineum HOM05D005585 ORTHO05D196034 3.7e-18 96.7 87 63.2
CBR_g50834 Chara braunii HOM05D002601 ORTHO05D002884 4.8e-18 96.3 273 24.5
Zm00001eb338430 Zea mays HOM05D005585 ORTHO05D006905 1.1e-17 95.1 88 48.9
Gohir.D09G170071 Gossypium hirsutum HOM05D005585 ORTHO05D006905 1.5e-16 91.3 130 42.3
Zm00001eb099110 Zea mays HOM05D005585 ORTHO05D006905 2.9e-15 87.0 123 39.0
PRCOL_00002102 Prasinoderma coloniale HOM05D005585 ORTHO05D006905 6.5e-15 85.9 284 22.5
Cre16.g664700 Chlamydomonas reinhardtii HOM05D005585 ORTHO05D006905 1.0e-12 78.6 331 22.7


User provided reference genes

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