Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR037830 Cardamine hirsuta HOM05D007246 ORTHO05D009066 2.5e-47 191.8 98 100.0
AT1G48200 Arabidopsis thaliana HOM05D007246 ORTHO05D009066 1.3e-32 142.9 77 92.2
Carub.0001s3729 Capsella rubella HOM05D007246 ORTHO05D009066 3.8e-32 141.4 77 92.2
Aa31LG10G5550 Aethionema arabicum HOM05D007246 ORTHO05D009066 6.1e-30 134.0 77 85.7
AL1G54790 Arabidopsis lyrata HOM05D007246 ORTHO05D009066 1.0e-29 133.3 71 93.0
Sp1g35150 Schrenkiella parvula HOM05D007246 ORTHO05D009066 2.3e-29 132.1 76 86.8
A06p04630 Brassica napus HOM05D007246 ORTHO05D009066 6.7e-29 130.6 77 83.1
A06p47840 Brassica napus HOM05D007246 ORTHO05D009066 6.7e-29 130.6 77 85.7
BolC7t43138H Brassica oleracea HOM05D007246 ORTHO05D009066 6.7e-29 130.6 77 85.7
BraA06t27654Z Brassica rapa HOM05D007246 ORTHO05D009066 6.7e-29 130.6 77 85.7
Sp1g35170 Schrenkiella parvula HOM05D007246 ORTHO05D009066 1.1e-28 129.8 77 83.1
BcaC06g31695 Brassica carinata HOM05D007246 ORTHO05D009066 1.5e-28 129.4 77 84.4
Thhalv10011824m.g Eutrema salsugineum HOM05D007246 ORTHO05D009066 2.0e-28 129.0 76 84.2
BcaC06g34651 Brassica carinata HOM05D007246 ORTHO05D009066 3.3e-28 128.3 76 85.5
C07p26120 Brassica napus HOM05D007246 ORTHO05D009066 3.3e-28 128.3 76 85.5
BraA06t23667Z Brassica rapa HOM05D007246 ORTHO05D009066 7.4e-28 127.1 77 84.4
C06p02690 Brassica napus HOM05D007246 ORTHO05D009066 1.8e-26 122.5 75 78.7
BolC6t35395H Brassica oleracea HOM05D007246 ORTHO05D009066 1.8e-26 122.5 75 78.7
BcaC08g43014 Brassica carinata HOM05D007246 ORTHO05D009066 1.2e-25 119.8 75 78.7
Carub.0007s3396 Capsella rubella HOM05D007246 ORTHO05D009066 1.4e-21 106.3 73 75.3
Duzib093G0837 Durio zibethinus HOM05D007246 ORTHO05D009066 1.2e-17 93.2 76 61.8
Gohir.A06G044000 Gossypium hirsutum HOM05D007246 ORTHO05D009066 1.0e-16 90.1 76 60.5
QL09p034990 Quercus lobata HOM05D007246 ORTHO05D009066 1.7e-16 89.4 76 60.5
THA.LOC104821809 Tarenaya hassleriana HOM05D007246 ORTHO05D009066 1.7e-16 89.4 77 59.7
ClCG11G015710 Citrullus lanatus HOM05D007246 ORTHO05D009066 2.2e-16 89.0 76 56.6
DCAR_003548 Daucus carota HOM05D007246 ORTHO05D009066 2.2e-16 89.0 73 60.3
Gorai.010G050000 Gossypium raimondii HOM05D007246 ORTHO05D009066 2.2e-16 89.0 76 59.2
Potri.002G084400 Populus trichocarpa HOM05D007246 ORTHO05D009066 2.2e-16 89.0 74 60.8
Manes.18G076600 Manihot esculenta HOM05D007246 ORTHO05D009066 2.9e-16 88.6 76 61.8
Lj5g0017876 Lotus japonicus HOM05D007246 ORTHO05D009066 6.5e-16 87.4 76 56.6
arahy.Tifrunner.gnm1.ann1.B2XLC5 Arachis hypogaea HOM05D007246 ORTHO05D009066 8.5e-16 87.0 76 60.5
arahy.Tifrunner.gnm1.ann1.HQB0BQ Arachis hypogaea HOM05D007246 ORTHO05D009066 8.5e-16 87.0 76 60.5
PGR142G2996 Punica granatum HOM05D007246 ORTHO05D009066 8.5e-16 87.0 77 58.4
Thecc.08G124300 Theobroma cacao HOM05D007246 ORTHO05D009066 8.5e-16 87.0 76 57.9
FvH4_2g26810 Fragaria vesca HOM05D007246 ORTHO05D009066 1.1e-15 86.7 76 59.2
Glyma.20G199500 Glycine max HOM05D007246 ORTHO05D009066 2.5e-15 85.5 76 53.9
Prupe.1G499600 Prunus persica HOM05D007246 ORTHO05D009066 2.5e-15 85.5 78 56.4
Sed0023701 Sechium edule HOM05D007246 ORTHO05D009066 2.5e-15 85.5 76 56.6
CiPaw.05G222500 Carya illinoinensis HOM05D007246 ORTHO05D009066 3.2e-15 85.1 85 56.5
Atru.chr10.1388 Acer truncatum HOM05D007246 ORTHO05D009066 4.2e-15 84.7 76 52.6
RcHm_v2.0_Chr6g0295671 Rosa chinensis HOM05D007246 ORTHO05D009066 4.2e-15 84.7 76 57.9
CANSAT25G3837 Cannabis sativa HOM05D007246 ORTHO05D009066 5.5e-15 84.3 76 56.6
Gohir.D06G044900 Gossypium hirsutum HOM05D007246 ORTHO05D009066 5.5e-15 84.3 77 58.4
Medtr1g073190 Medicago truncatula HOM05D007246 ORTHO05D009066 5.5e-15 84.3 76 56.6
FAN27G1944 Fragaria x ananassa HOM05D007246 ORTHO05D009066 7.2e-15 84.0 64 67.2
Cfa016011 Carpinus fangiana HOM05D007246 ORTHO05D009066 9.4e-15 83.6 76 60.5
CsaV3_4G028300 Cucumis sativus L. HOM05D007246 ORTHO05D009066 9.4e-15 83.6 76 53.9
FAN15G0425 Fragaria x ananassa HOM05D007246 ORTHO05D009066 9.4e-15 83.6 76 59.2
COL.COLO4_35932 Corchorus olitorius HOM05D007246 ORTHO05D009066 2.7e-14 82.0 77 55.8
Haze_00452 Corylus avellana HOM05D007246 ORTHO05D009066 2.7e-14 82.0 76 59.2
MELO3C010475.2 Cucumis melo HOM05D007246 ORTHO05D009066 2.7e-14 82.0 76 52.6
Eucgr.F03786 Eucalyptus grandis HOM05D007246 ORTHO05D009066 2.7e-14 82.0 76 55.3
Cpa.g.sc36.60 Carica papaya HOM05D007246 ORTHO05D009066 3.6e-14 81.6 77 54.5
Ciclev10002868m.g Citrus clementina HOM05D007246 ORTHO05D009066 3.6e-14 81.6 76 51.3
MD08G1164500 Malus domestica HOM05D007246 ORTHO05D009066 3.6e-14 81.6 76 55.3
Phvul.L001676 Phaseolus vulgaris HOM05D007246 ORTHO05D009066 6.1e-14 80.9 76 53.9
Rhsim03G0059000 Rhododendron simsii HOM05D007246 ORTHO05D009066 6.1e-14 80.9 76 55.3
Hma1.2p1_0186F.1_g081760 Hydrangea macrophylla HOM05D007246 ORTHO05D009066 8.0e-14 80.5 76 55.3
TPR.G18552 Trifolium pratense HOM05D007246 ORTHO05D009066 8.0e-14 80.5 76 53.9
VMungo0720G2760 Vigna mungo HOM05D003112 ORTHO05D003660 2.3e-13 79.0 76 52.6
Sopen11g007630 Solanum pennellii HOM05D007246 ORTHO05D009066 3.0e-13 78.6 74 54.1
BcaB07g33783 Brassica carinata HOM05D007246 ORTHO05D009066 4.0e-13 78.2 65 63.1
Lalb_Chr06g0169561 Lupinus albus HOM05D007246 ORTHO05D009066 4.0e-13 78.2 74 52.7
Psat6g131200 Pisum sativum HOM05D007246 ORTHO05D009066 4.0e-13 78.2 76 55.3
Solyc11g012890.2 Solanum lycopersicum HOM05D007246 ORTHO05D009066 4.0e-13 78.2 74 54.1
TWI36G0927 Tripterygium wilfordii HOM05D007246 ORTHO05D009066 6.8e-13 77.4 76 56.6
TAR381G0547 Trochodendron aralioides HOM05D007246 ORTHO05D009066 6.8e-13 77.4 77 53.2
Oeu040422.1 Olea europaea HOM05D007246 ORTHO05D009066 8.8e-13 77.0 75 50.7
Lsat_1_v5_gn_5_179321 Lactuca sativa HOM05D007246 ORTHO05D009066 1.2e-12 76.6 79 51.9
PGSC0003DMG400000898 Solanum tuberosum HOM05D007246 ORTHO05D009066 1.5e-12 76.3 74 52.7
CSS0048322 Camellia sinensis var. sinensis HOM05D007246 ORTHO05D009066 2.0e-12 75.9 84 50.0
Ca_09797_v3 Cicer arietinum L. HOM05D007246 ORTHO05D009066 4.4e-12 74.7 76 50.0
Actinidia02617 Actinidia chinensis HOM05D007246 ORTHO05D009066 5.7e-12 74.3 74 54.1
GSVIVG01008877001 Vitis vinifera HOM05D007246 ORTHO05D009066 5.7e-12 74.3 73 50.7
Nn5g28257 Nelumbo nucifera HOM05D007246 ORTHO05D009066 7.5e-12 73.9 74 50.0
EL10Ac1g01002 Beta vulgaris HOM05D007246 ORTHO05D009066 1.7e-11 72.8 76 47.4
Aqoxy6G00205 Aquilegia oxysepala HOM05D007246 ORTHO05D009066 2.8e-11 72.0 69 55.1
ECA248G1302 Erigeron canadensis HOM05D007246 ORTHO05D009066 2.8e-11 72.0 74 50.0
HanXRQChr13g0407621 Helianthus annuus HOM05D007246 ORTHO05D009066 2.8e-11 72.0 74 47.3
Nitab4.5_0001803g0080 Nicotiana tabacum HOM05D007246 ORTHO05D009066 4.8e-11 71.2 74 48.6
Sc25g0000500 Simmondsia chinensis HOM05D007246 ORTHO05D009066 4.8e-11 71.2 85 43.5
Peaxi162Scf00537g00034 Petunia axillaris HOM05D007246 ORTHO05D009066 6.3e-11 70.9 75 50.7
Migut.C01135 Erythranthe guttata HOM05D007246 ORTHO05D009066 8.3e-11 70.5 70 50.0
SGA_v2.0_scaffold24G10465 Striga asiatica HOM05D007246 ORTHO05D009066 8.3e-11 70.5 70 50.0
Hund17288 Selenicereus undatus HOM05D007246 ORTHO05D009066 1.4e-10 69.7 76 46.1
Ah.05g171160 Amaranthus hybridus HOM05D007246 ORTHO05D009066 2.4e-10 68.9 67 52.2
MSTRG.1448 Avicennia marina HOM05D007246 ORTHO05D009066 2.4e-10 68.9 64 56.2
Nitab4.5_0001273g0060 Nicotiana tabacum HOM05D007246 ORTHO05D009066 7.0e-10 67.4 74 45.9
SalBow7G0738 Salvia bowleyana HOM05D007246 ORTHO05D009066 2.7e-09 65.5 65 52.3
PSO170G1503 Papaver somniferum HOM05D007246 ORTHO05D009066 7.7e-09 63.9 75 44.0
PSO528G0221 Papaver somniferum HOM05D007246 ORTHO05D009066 1.3e-08 63.2 75 44.0
FAN20G0163 Fragaria x ananassa HOM05D007246 ORTHO05D009066 1.7e-08 62.8 63 55.6
SGA_v2.0_scaffold52G18970 Striga asiatica HOM05D007246 ORTHO05D009066 1.6e-06 56.2 75 41.3
BcaB07g33731 Brassica carinata HOM05D007246 ORTHO05D009066 3.6e-06 55.1 31 80.6
BcaB07g33733 Brassica carinata HOM05D007246 ORTHO05D009066 3.6e-06 55.1 31 80.6
CDE06G1719 Ceratophyllum demersum HOM05D007246 ORTHO05D009066 3.6e-06 55.1 70 41.4
unitig_37.g12972 Utricularia gibba HOM05D007246 ORTHO05D009066 4.7e-06 54.7 61 44.3


User provided reference genes

Program Settings