Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR037810 Cardamine hirsuta HOM05D006846 ORTHO05D008473 4.6e-80 301.2 156 100.0
AT1G48170 Arabidopsis thaliana HOM05D006846 ORTHO05D008473 1.9e-70 269.2 153 90.8
Carub.0005s0005 Capsella rubella HOM05D006846 ORTHO05D008473 3.3e-70 268.5 153 89.5
BcaB07g33786 Brassica carinata HOM05D006846 ORTHO05D008473 4.3e-70 268.1 153 88.9
Carub.0001s3726 Capsella rubella HOM05D003832 ORTHO05D004365 9.6e-70 266.9 154 89.0
AL1G54740 Arabidopsis lyrata HOM05D006846 ORTHO05D008473 8.1e-69 263.8 153 90.8
Thhalv10012405m.g Eutrema salsugineum HOM05D006846 ORTHO05D008473 7.6e-67 257.3 153 85.6
A06p04640 Brassica napus HOM05D006846 ORTHO05D008473 7.8e-64 247.3 153 83.7
BraA06t23668Z Brassica rapa HOM05D006846 ORTHO05D008473 7.8e-64 247.3 153 83.7
BolC6t35393H Brassica oleracea HOM05D006846 ORTHO05D008473 3.9e-63 245.0 153 82.4
BcaC08g43012 Brassica carinata HOM05D006846 ORTHO05D008473 5.1e-63 244.6 153 83.0
C06p02670 Brassica napus HOM05D006846 ORTHO05D008473 5.1e-63 244.6 153 83.0
Sp3g23740 Schrenkiella parvula HOM05D006846 ORTHO05D008473 8.7e-63 243.8 153 82.4
Aa31LG10G5560 Aethionema arabicum HOM05D006846 ORTHO05D008473 3.6e-61 238.4 153 81.7
CARHR290870 Cardamine hirsuta HOM05D006846 ORTHO05D008473 2.9e-58 228.8 124 92.7
THA.LOC104821808 Tarenaya hassleriana HOM05D006846 ORTHO05D008473 1.1e-52 210.3 152 73.7
GSVIVG01017604001 Vitis vinifera HOM05D006846 ORTHO05D008473 5.6e-46 188.0 136 67.6
GSVIVG01017661001 Vitis vinifera HOM05D006846 ORTHO05D008473 5.6e-46 188.0 136 67.6
Actinidia18502 Actinidia chinensis HOM05D006846 ORTHO05D008473 1.6e-45 186.4 133 68.4
Migut.H02019 Erythranthe guttata HOM05D006846 ORTHO05D008473 2.8e-45 185.7 133 67.7
Nitab4.5_0007474g0050 Nicotiana tabacum HOM05D006846 ORTHO05D008473 2.8e-45 185.7 130 70.8
PSO339G5299 Papaver somniferum HOM05D006846 ORTHO05D008473 4.8e-45 184.9 129 70.5
Nitab4.5_0007368g0030 Nicotiana tabacum HOM05D006846 ORTHO05D008473 6.2e-45 184.5 124 73.4
Peaxi162Scf00579g00010 Petunia axillaris HOM05D006846 ORTHO05D008473 2.4e-44 182.6 122 70.5
Eucgr.H04110 Eucalyptus grandis HOM05D006846 ORTHO05D008473 1.2e-43 180.3 123 69.1
Hund16859 Selenicereus undatus HOM05D006846 ORTHO05D008473 3.4e-43 178.7 118 73.7
Duzib212G0339 Durio zibethinus HOM05D006846 ORTHO05D008473 5.8e-43 177.9 113 77.0
Os12g0182800 Oryza sativa ssp. japonica HOM05D006846 ORTHO05D008473 5.8e-43 177.9 136 67.6
Potri.008G099700 Populus trichocarpa HOM05D006846 ORTHO05D008473 7.6e-43 177.6 116 75.9
Zm00001eb359370 Zea mays HOM05D006846 ORTHO05D008473 7.6e-43 177.6 132 68.9
MSTRG.14213 Avicennia marina HOM05D006846 ORTHO05D008473 1.0e-42 177.2 115 73.9
PSO384G1587 Papaver somniferum HOM05D006846 ORTHO05D008473 1.0e-42 177.2 129 67.4
CsaV3_4G025810 Cucumis sativus L. HOM05D006846 ORTHO05D008473 1.3e-42 176.8 118 72.0
Hma1.2p1_0013F.1_g007970 Hydrangea macrophylla HOM05D006846 ORTHO05D008473 2.2e-42 176.0 114 74.6
QL06p041421 Quercus lobata HOM05D006846 ORTHO05D008473 2.9e-42 175.6 121 69.4
Prupe.1G108100 Prunus persica HOM05D006846 ORTHO05D008473 3.8e-42 175.3 120 70.0
Gohir.D09G242700 Gossypium hirsutum HOM05D006846 ORTHO05D008473 6.5e-42 174.5 115 74.8
Gorai.006G266400 Gossypium raimondii HOM05D006846 ORTHO05D008473 6.5e-42 174.5 115 74.8
Lj6A699T67 Lonicera japonica HOM05D006846 ORTHO05D008473 6.5e-42 174.5 117 70.9
PGR004G1594 Punica granatum HOM05D006846 ORTHO05D008473 1.1e-41 173.7 123 69.1
PGR033G0007 Punica granatum HOM05D006846 ORTHO05D008473 1.1e-41 173.7 123 69.1
CiPaw.01G161800 Carya illinoinensis HOM05D006846 ORTHO05D008473 1.4e-41 173.3 120 70.0
MELO3C003207.2 Cucumis melo HOM05D006846 ORTHO05D008473 1.4e-41 173.3 142 63.4
Rhsim04G0247300 Rhododendron simsii HOM05D006846 ORTHO05D008473 1.4e-41 173.3 138 64.5
SGA_v2.0_scaffold127G34033 Striga asiatica HOM05D006846 ORTHO05D008473 1.4e-41 173.3 141 62.4
Thecc.04G310600 Theobroma cacao HOM05D006846 ORTHO05D008473 1.9e-41 172.9 124 67.7
MD13G1143600 Malus domestica HOM05D006846 ORTHO05D008473 4.2e-41 171.8 125 69.6
Sabra08G0075400 Salix brachista HOM05D006846 ORTHO05D008473 4.2e-41 171.8 124 71.8
Manes.03G210800 Manihot esculenta HOM05D006846 ORTHO05D008473 7.1e-41 171.0 112 75.0
Lalb_Chr07g0181811 Lupinus albus HOM05D006846 ORTHO05D008473 2.1e-40 169.5 120 69.2
Sed0003831 Sechium edule HOM05D006846 ORTHO05D008473 2.1e-40 169.5 115 69.6
Medtr2g046100 Medicago truncatula HOM05D006846 ORTHO05D008473 2.7e-40 169.1 117 69.2
CANSAT01G2167 Cannabis sativa HOM05D006846 ORTHO05D008473 1.0e-39 167.2 129 65.9
Solyc06g053470.3 Solanum lycopersicum HOM05D006846 ORTHO05D008473 1.3e-39 166.8 129 63.6
Sopen06g018550 Solanum pennellii HOM05D006846 ORTHO05D008473 1.3e-39 166.8 129 63.6
Sc23g0000700 Simmondsia chinensis HOM05D006846 ORTHO05D008473 1.8e-39 166.4 127 62.2
PGSC0003DMG400016299 Solanum tuberosum HOM05D006846 ORTHO05D008473 2.3e-39 166.0 144 58.3
RcHm_v2.0_Chr4g0426881 Rosa chinensis HOM05D006846 ORTHO05D008473 3.0e-39 165.6 130 66.2
Ciclev10007018m.g Citrus clementina HOM05D006846 ORTHO05D008473 5.1e-39 164.9 118 65.3
FvH4_4g21260 Fragaria vesca HOM05D006846 ORTHO05D008473 5.1e-39 164.9 121 68.6
FAN07G1325 Fragaria x ananassa HOM05D006846 ORTHO05D008473 5.1e-39 164.9 121 68.6
Dinv29523 Davidia involucrata HOM05D006846 ORTHO05D008473 6.7e-39 164.5 97 81.4
vmacro08003 Vaccinium macrocarpon HOM05D006846 ORTHO05D008473 6.7e-39 164.5 189 49.7
CDE12G0609 Ceratophyllum demersum HOM05D006846 ORTHO05D008473 8.7e-39 164.1 144 58.3
AUR62019042 Chenopodium quinoa HOM05D006846 ORTHO05D008473 1.1e-38 163.7 118 65.3
MBI11_g10320_MAGBIO Magnolia biondii HOM05D006846 ORTHO05D008473 1.1e-38 163.7 117 65.8
SGA_v2.0_scaffold64G22040 Striga asiatica HOM05D006846 ORTHO05D008473 1.1e-38 163.7 162 53.7
Aqoxy1G00358 Aquilegia oxysepala HOM05D006846 ORTHO05D008473 1.5e-38 163.3 131 63.4
arahy.Tifrunner.gnm1.ann1.BIT0EB Arachis hypogaea HOM05D006846 ORTHO05D008473 1.5e-38 163.3 137 57.7
Lj6g0016026 Lotus japonicus HOM05D006846 ORTHO05D008473 1.9e-38 162.9 113 67.3
SGA_v2.0_scaffold127G34034 Striga asiatica HOM05D006846 ORTHO05D008473 3.3e-38 162.2 144 59.0
Cfa015953 Carpinus fangiana HOM05D006846 ORTHO05D008473 5.7e-38 161.4 124 68.5
Glyma.15G188800 Glycine max HOM05D006846 ORTHO05D008473 5.7e-38 161.4 123 64.2
CAN.G136.4 Capsicum annuum HOM05D006846 ORTHO05D008473 9.7e-38 160.6 154 53.2
Psat1g017720 Pisum sativum HOM05D006846 ORTHO05D008473 1.3e-37 160.2 114 65.8
AUR62027881 Chenopodium quinoa HOM05D006846 ORTHO05D008473 1.6e-37 159.8 122 63.1
Phvul.009G219800 Phaseolus vulgaris HOM05D006846 ORTHO05D008473 1.6e-37 159.8 117 65.8
VMungo1309G3101 Vigna mungo HOM05D006846 ORTHO05D008473 1.6e-37 159.8 135 57.8
HanXRQChr09g0246471 Helianthus annuus HOM05D006846 ORTHO05D008473 6.3e-37 157.9 138 59.4
EL10Ac1g01060 Beta vulgaris HOM05D006846 ORTHO05D008473 5.3e-36 154.8 122 62.3
SEGI_09291 Sequoiadendron giganteum HOM05D006846 ORTHO05D008473 5.3e-36 154.8 128 59.4
Ca_02363_v3 Cicer arietinum L. HOM05D006846 ORTHO05D008473 1.2e-35 153.7 119 63.0
FAN12G0803 Fragaria x ananassa HOM05D006846 ORTHO05D008473 1.5e-35 153.3 146 57.5
ECA233G5003 Erigeron canadensis HOM05D006846 ORTHO05D008473 2.0e-35 152.9 109 65.1
SalBow8G5328 Salvia bowleyana HOM05D006846 ORTHO05D008473 8.5e-34 147.5 135 57.8
COL.COLO4_34545 Corchorus olitorius HOM05D005582 ORTHO05D007028 5.5e-33 144.8 98 70.4
Cc03_g00240 Coffea canephora HOM05D006846 ORTHO05D008473 1.2e-32 143.7 89 74.2
unitig_744.g24645 Utricularia gibba HOM05D006846 ORTHO05D008473 1.6e-32 143.3 133 56.4
TWI73G0996 Tripterygium wilfordii HOM05D006846 ORTHO05D008473 8.8e-31 137.5 111 62.2
TPR.G27493 Trifolium pratense HOM05D006846 ORTHO05D008473 9.7e-30 134.0 106 63.2
Haze_00535 Corylus avellana HOM05D006846 ORTHO05D008473 3.1e-28 129.0 121 59.5
Dinv29521 Davidia involucrata HOM05D006846 ORTHO05D008473 5.3e-28 128.3 120 57.5
MD16G1146600 Malus domestica HOM05D006846 ORTHO05D008473 5.3e-28 128.3 122 54.9
Haze_00536 Corylus avellana HOM05D006846 ORTHO05D008473 1.2e-27 127.1 117 59.0
HPP92_004479 Vanilla planifolia HOM05D006846 ORTHO05D008473 5.9e-27 124.8 123 54.5
Pp3c9_17660 Physcomitrium patens HOM05D006846 ORTHO05D008473 2.9e-26 122.5 117 50.4
Gohir.A09G242000 Gossypium hirsutum HOM05D006846 ORTHO05D008473 8.5e-26 120.9 115 58.3
MBI18_g09611_MAGBIO Magnolia biondii HOM05D006846 ORTHO05D008473 1.1e-25 120.6 101 59.4
Nn4g26496 Nelumbo nucifera HOM05D006846 ORTHO05D008473 1.1e-25 120.6 113 56.6
QL11p040346 Quercus lobata HOM05D006846 ORTHO05D008473 1.9e-25 119.8 112 57.1
Mapoly0021s0070 Marchantia polymorpha HOM05D006846 ORTHO05D008473 9.4e-25 117.5 114 49.1
TAR365G0638 Trochodendron aralioides HOM05D006846 ORTHO05D008473 1.2e-24 117.1 84 66.7
CSS0050245 Camellia sinensis var. sinensis HOM05D006846 ORTHO05D008473 4.4e-22 108.6 70 77.1
arahy.Tifrunner.gnm1.ann1.EYUN0W Arachis hypogaea HOM05D000385 ORTHO05D000269 1.3e-21 107.1 137 41.6
ATR0693G432 Amborella trichopoda HOM05D006846 ORTHO05D008473 1.7e-21 106.7 95 55.8
Lsat_1_v5_gn_6_71441 Lactuca sativa HOM05D006846 ORTHO05D008473 2.4e-20 102.8 134 42.5
Glyma.09G078800 Glycine max HOM05D006846 ORTHO05D008473 1.3e-18 97.1 60 78.3
ClCG04G007450 Citrullus lanatus HOM05D006846 ORTHO05D008473 3.2e-17 92.4 68 66.2
CSS0047848 Camellia sinensis var. sinensis HOM05D006846 ORTHO05D008473 5.5e-17 91.7 53 83.0
Cpa.g.sc146.38 Carica papaya HOM05D006846 ORTHO05D008473 8.0e-16 87.8 48 87.5
Zm00001eb158200 Zea mays HOM05D006846 ORTHO05D008473 4.8e-13 78.6 58 63.8
Hma1.2p1_0013F.1_g007960 Hydrangea macrophylla HOM05D006846 ORTHO05D008473 1.6e-11 73.6 53 64.2
MBI19_g16347_MAGBIO Magnolia biondii HOM05D006846 ORTHO05D008473 3.5e-11 72.4 92 47.8
AagrBONN_evm.TU.Sc2ySwM_117.777 Anthoceros agrestis HOM05D006846 ORTHO05D008473 4.2e-09 65.5 66 47.0
Cre04.g216300 Chlamydomonas reinhardtii HOM05D006846 ORTHO05D008473 5.5e-09 65.1 102 34.3
Dinv18032 Davidia involucrata HOM05D006846 ORTHO05D008473 1.8e-07 60.1 79 49.4
Thecc.01G162200 Theobroma cacao HOM05D006846 ORTHO05D008473 7.5e-06 54.7 59 55.9


User provided reference genes

Program Settings