Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR037660 Cardamine hirsuta HOM05D003146 ORTHO05D001819 1.1e-90 336.7 175 100.0
AL1G54540 Arabidopsis lyrata HOM05D003146 ORTHO05D001819 2.9e-83 312.0 175 92.0
AT1G48020 Arabidopsis thaliana HOM05D003146 ORTHO05D001819 5.5e-82 307.8 175 90.3
Thhalv10011818m.g Eutrema salsugineum HOM05D003146 ORTHO05D001819 2.7e-81 305.4 175 89.7
Sp1g35000 Schrenkiella parvula HOM05D003146 ORTHO05D001819 2.7e-81 305.4 175 89.7
Carub.0001s3713 Capsella rubella HOM05D003146 ORTHO05D001819 3.0e-80 302.0 175 88.6
BcaB04g17471 Brassica carinata HOM05D003146 ORTHO05D001819 1.8e-77 292.7 175 86.9
BolC8t47376H Brassica oleracea HOM05D003146 ORTHO05D001819 6.9e-77 290.8 175 86.9
AL1G54590 Arabidopsis lyrata HOM05D003146 ORTHO05D001819 9.1e-77 290.4 163 91.4
A08p05340 Brassica napus HOM05D003146 ORTHO05D001819 2.0e-76 289.3 175 85.7
BraSC267t45946Z Brassica rapa HOM05D003146 ORTHO05D001819 2.0e-76 289.3 175 85.7
BcaB02g11337 Brassica carinata HOM05D003146 ORTHO05D001819 1.3e-75 286.6 175 82.9
BcaC07g37182 Brassica carinata HOM05D003146 ORTHO05D001819 1.3e-75 286.6 175 85.1
C08p05630 Brassica napus HOM05D003146 ORTHO05D001819 2.2e-75 285.8 175 85.7
BcaC05g27598 Brassica carinata HOM05D003146 ORTHO05D001819 2.9e-75 285.4 175 82.9
C05p35840 Brassica napus HOM05D003146 ORTHO05D001819 2.9e-75 285.4 175 82.9
BolC5t32301H Brassica oleracea HOM05D003146 ORTHO05D001819 2.9e-75 285.4 175 82.9
A05p21240 Brassica napus HOM05D003146 ORTHO05D001819 5.0e-75 284.6 175 82.9
BraA05t21032Z Brassica rapa HOM05D003146 ORTHO05D001819 1.9e-74 282.7 175 82.3
Aa31LG10G5790 Aethionema arabicum HOM05D003146 ORTHO05D001819 3.7e-54 215.3 176 63.1
THA.LOC104816708 Tarenaya hassleriana HOM05D003146 ORTHO05D001819 3.4e-47 192.2 176 56.8
THA.LOC104825373 Tarenaya hassleriana HOM05D003146 ORTHO05D001819 2.8e-46 189.1 171 57.3
THA.LOC104820282 Tarenaya hassleriana HOM05D003146 ORTHO05D001819 3.7e-46 188.7 177 55.4
THA.LOC104817105 Tarenaya hassleriana HOM05D003146 ORTHO05D001819 1.1e-45 187.2 176 55.7
THA.LOC104808963 Tarenaya hassleriana HOM05D003146 ORTHO05D001819 6.6e-43 177.9 176 54.0
CARHR092490 Cardamine hirsuta HOM05D003146 ORTHO05D001819 1.7e-30 136.7 175 42.9
AL3G30250 Arabidopsis lyrata HOM05D003146 ORTHO05D001819 9.2e-29 131.0 175 41.7
Aa31LG8G4190 Aethionema arabicum HOM05D003146 ORTHO05D001819 2.0e-28 129.8 173 44.5
Thhalv10022367m.g Eutrema salsugineum HOM05D003146 ORTHO05D001819 1.0e-27 127.5 175 39.4
AT3G17220 Arabidopsis thaliana HOM05D003146 ORTHO05D001819 1.7e-27 126.7 175 40.6
Carub.0003s1698 Capsella rubella HOM05D003146 ORTHO05D001819 5.0e-27 125.2 175 40.6
BcaB04g20850 Brassica carinata HOM05D003146 ORTHO05D001819 1.6e-25 120.2 169 39.6
BcaC09g48683 Brassica carinata HOM05D003146 ORTHO05D001819 1.6e-25 120.2 169 39.1
C01p46950 Brassica napus HOM05D003146 ORTHO05D001819 1.6e-25 120.2 169 39.1
C01p46980 Brassica napus HOM05D003146 ORTHO05D001819 1.6e-25 120.2 169 39.1
BolC1t04666H Brassica oleracea HOM05D003146 ORTHO05D001819 1.6e-25 120.2 169 39.1
THA.LOC104802649 Tarenaya hassleriana HOM05D003146 ORTHO05D001819 1.6e-25 120.2 183 40.4
A01p37050 Brassica napus HOM05D003146 ORTHO05D001819 2.1e-25 119.8 169 39.6
Sp3g15430 Schrenkiella parvula HOM05D003146 ORTHO05D001819 2.1e-25 119.8 175 39.4
BraA01t03766Z Brassica rapa HOM05D003146 ORTHO05D001819 2.8e-25 119.4 169 39.1
THA.LOC104802648 Tarenaya hassleriana HOM05D003146 ORTHO05D001819 1.8e-24 116.7 168 39.3
Thhalv10012260m.g Eutrema salsugineum HOM05D008385 ORTHO05D001819 1.0e-19 100.9 184 35.3
Sed0025500 Sechium edule HOM05D003146 ORTHO05D001819 3.0e-19 99.4 163 33.7
Aa31LG10G5700 Aethionema arabicum HOM05D008385 ORTHO05D001819 2.5e-18 96.3 181 35.4
Aa31LG10G5720 Aethionema arabicum HOM05D008385 ORTHO05D001819 4.3e-18 95.5 176 36.9
THA.LOC104803096 Tarenaya hassleriana HOM05D003146 ORTHO05D001819 5.6e-18 95.1 183 33.9
MELO3C019860.2 Cucumis melo HOM05D003146 ORTHO05D001819 2.1e-17 93.2 159 35.8
MELO3C027398.2 Cucumis melo HOM05D003146 ORTHO05D001819 2.1e-17 93.2 161 34.8
MELO3C019866.2 Cucumis melo HOM05D003146 ORTHO05D001819 3.6e-17 92.4 159 34.6
ClCG09G008860 Citrullus lanatus HOM05D003146 ORTHO05D001819 4.7e-17 92.0 165 34.5
Actinidia18484 Actinidia chinensis HOM05D003146 ORTHO05D001819 6.2e-17 91.7 146 36.3
MELO3C019867.2 Cucumis melo HOM05D003146 ORTHO05D001819 1.4e-16 90.5 159 35.2
MELO3C034932.2 Cucumis melo HOM05D003146 ORTHO05D001819 1.8e-16 90.1 161 34.8
Sed0022729 Sechium edule HOM05D003146 ORTHO05D001819 1.8e-16 90.1 154 33.8
MELO3C027590.2 Cucumis melo HOM05D003146 ORTHO05D001819 2.3e-16 89.7 157 33.8
Glyma.15G207000 Glycine max HOM05D007995 ORTHO05D001819 2.3e-16 89.7 127 38.6
Glyma.15G207100 Glycine max HOM05D007995 ORTHO05D001819 2.3e-16 89.7 127 38.6
MELO3C000643.2 Cucumis melo HOM05D003146 ORTHO05D001819 5.2e-16 88.6 159 34.0
MELO3C025842.2 Cucumis melo HOM05D003146 ORTHO05D001819 5.2e-16 88.6 164 32.9
MELO3C027265.2 Cucumis melo HOM05D003146 ORTHO05D001819 5.2e-16 88.6 161 34.8
CsaV3_UNG225750 Cucumis sativus L. HOM05D003146 ORTHO05D001819 1.5e-15 87.0 169 33.1
A01p37120 Brassica napus HOM05D003146 ORTHO05D001819 2.6e-15 86.3 177 33.9
CsaV3_UNG084670 Cucumis sativus L. HOM05D003146 ORTHO05D001819 2.6e-15 86.3 164 32.9
CsaV3_UNG132030 Cucumis sativus L. HOM05D003146 ORTHO05D001819 2.6e-15 86.3 164 32.9
MELO3C001332.2 Cucumis melo HOM05D003146 ORTHO05D001819 1.3e-14 84.0 163 32.5
MELO3C028122.2 Cucumis melo HOM05D003146 ORTHO05D001819 1.3e-14 84.0 163 32.5
MELO3C030075.2 Cucumis melo HOM05D003146 ORTHO05D001819 1.3e-14 84.0 141 35.5
ClCG11G011230 Citrullus lanatus HOM05D003146 ORTHO05D001819 1.7e-14 83.6 163 32.5
MELO3C000722.2 Cucumis melo HOM05D003146 ORTHO05D001819 2.9e-14 82.8 169 32.0
MELO3C027828.2 Cucumis melo HOM05D003146 ORTHO05D001819 2.9e-14 82.8 161 32.9
CsaV3_2G000020 Cucumis sativus L. HOM05D003146 ORTHO05D001819 2.9e-14 82.8 166 31.9
CsaV3_6G022330 Cucumis sativus L. HOM05D003146 ORTHO05D001819 3.7e-14 82.4 169 33.1
Dinv29549 Davidia involucrata HOM05D003146 ORTHO05D001819 3.7e-14 82.4 154 32.5
Ca_06775_v3 Cicer arietinum L. HOM05D007995 ORTHO05D001819 4.9e-14 82.0 169 30.8
MELO3C027585.2 Cucumis melo HOM05D003146 ORTHO05D001819 4.9e-14 82.0 161 32.3
QL06p013377 Quercus lobata HOM05D003146 ORTHO05D001819 4.9e-14 82.0 179 28.5
MELO3C019864.2 Cucumis melo HOM05D003146 ORTHO05D001819 1.1e-13 80.9 159 31.4
MELO3C032417.2 Cucumis melo HOM05D003146 ORTHO05D001819 1.4e-13 80.5 159 31.4
TPR.G16193 Trifolium pratense HOM05D007995 ORTHO05D001819 1.9e-13 80.1 170 32.9
CsaV3_6G026320 Cucumis sativus L. HOM05D003146 ORTHO05D001819 2.4e-13 79.7 163 31.3
CsaV3_6G026340 Cucumis sativus L. HOM05D003146 ORTHO05D001819 2.4e-13 79.7 163 31.3
CsaV3_6G027350 Cucumis sativus L. HOM05D003146 ORTHO05D001819 2.4e-13 79.7 163 31.3
QL06p013378 Quercus lobata HOM05D003146 ORTHO05D001819 2.4e-13 79.7 176 29.0
MELO3C028017.2 Cucumis melo HOM05D003146 ORTHO05D001819 3.2e-13 79.3 163 30.7
ClCG06G004590 Citrullus lanatus HOM05D003146 ORTHO05D001819 5.4e-13 78.6 159 30.8
MELO3C000387.2 Cucumis melo HOM05D003146 ORTHO05D001819 5.4e-13 78.6 159 30.2
MELO3C030065.2 Cucumis melo HOM05D003146 ORTHO05D001819 7.1e-13 78.2 159 30.8
MELO3C030067.2 Cucumis melo HOM05D003146 ORTHO05D001819 7.1e-13 78.2 159 31.4
CsaV3_4G038000 Cucumis sativus L. HOM05D003146 ORTHO05D001819 7.1e-13 78.2 163 31.3
CsaV3_6G023780 Cucumis sativus L. HOM05D003146 ORTHO05D001819 7.1e-13 78.2 163 31.3
CsaV3_UNG007100 Cucumis sativus L. HOM05D003146 ORTHO05D001819 7.1e-13 78.2 163 31.3
CsaV3_UNG217460 Cucumis sativus L. HOM05D003146 ORTHO05D001819 7.1e-13 78.2 163 31.3
CsaV3_UNG235420 Cucumis sativus L. HOM05D003146 ORTHO05D001819 7.1e-13 78.2 163 31.3
MELO3C034829.2 Cucumis melo HOM05D003146 ORTHO05D001819 1.2e-12 77.4 164 31.7
MELO3C035196.2 Cucumis melo HOM05D003146 ORTHO05D001819 1.2e-12 77.4 155 32.9
Aa31LG10G5710 Aethionema arabicum HOM05D008385 ORTHO05D010806 2.1e-12 76.6 152 34.9
MELO3C030077.2 Cucumis melo HOM05D003146 ORTHO05D001819 2.1e-12 76.6 159 30.8
MELO3C034867.2 Cucumis melo HOM05D003146 ORTHO05D001819 2.1e-12 76.6 170 30.6
TPR.G28273 Trifolium pratense HOM05D007995 ORTHO05D001819 2.1e-12 76.6 172 32.0
MELO3C030064.2 Cucumis melo HOM05D003146 ORTHO05D001819 2.7e-12 76.3 159 30.2
Phvul.007G271600 Phaseolus vulgaris HOM05D007995 ORTHO05D001819 3.5e-12 75.9 165 30.3
MELO3C027044.2 Cucumis melo HOM05D003146 ORTHO05D001819 4.6e-12 75.5 170 30.6
MELO3C032509.2 Cucumis melo HOM05D003146 ORTHO05D001819 4.6e-12 75.5 159 30.8
Rhsim04G0244100 Rhododendron simsii HOM05D003146 ORTHO05D001819 4.6e-12 75.5 177 33.3
QL04p007223 Quercus lobata HOM05D003146 ORTHO05D001819 6.0e-12 75.1 170 29.4
VMungo0720G2167 Vigna mungo HOM05D007995 ORTHO05D001819 6.0e-12 75.1 173 31.2
Medtr4g025010 Medicago truncatula HOM05D007995 ORTHO05D001819 7.8e-12 74.7 166 32.5
MSTRG.10815 Avicennia marina HOM05D011410 ORTHO05D013015 1.7e-11 73.6 164 31.1
A03p29810 Brassica napus HOM05D008385 ORTHO05D001819 1.7e-11 73.6 177 28.2
Solyc03g112180.1 Solanum lycopersicum HOM05D003146 ORTHO05D001819 3.0e-11 72.8 168 31.0
ClCG07G004740 Citrullus lanatus HOM05D003146 ORTHO05D001819 5.1e-11 72.0 164 28.7
Lalb_Chr16g0386201 Lupinus albus HOM05D007995 ORTHO05D001819 5.1e-11 72.0 176 35.8
Lalb_Chr16g0386221 Lupinus albus HOM05D007995 ORTHO05D001819 6.6e-11 71.6 176 35.2
Peaxi162Scf00089g00132 Petunia axillaris HOM05D003146 ORTHO05D001819 6.6e-11 71.6 135 29.6
PGR004G1752 Punica granatum HOM05D003146 ORTHO05D001819 6.6e-11 71.6 177 27.1
Thhalv10012028m.g Eutrema salsugineum HOM05D008385 ORTHO05D010806 1.1e-10 70.9 158 29.1
Haze_03215 Corylus avellana HOM05D003146 ORTHO05D001819 1.5e-10 70.5 134 32.1
Nitab4.5_0010452g0030 Nicotiana tabacum HOM05D003146 ORTHO05D001819 1.5e-10 70.5 170 27.6
CAN.G338.39 Capsicum annuum HOM05D003146 ORTHO05D001819 1.9e-10 70.1 167 29.3
MELO3C019686.2 Cucumis melo HOM05D003146 ORTHO05D001819 1.9e-10 70.1 172 30.8
CAN.G338.41 Capsicum annuum HOM05D003146 ORTHO05D001819 2.5e-10 69.7 169 28.4
C01p47000 Brassica napus HOM05D003146 ORTHO05D001819 3.3e-10 69.3 146 32.9
BolC1t04668H Brassica oleracea HOM05D003146 ORTHO05D001819 3.3e-10 69.3 146 32.9
Medtr8g032810 Medicago truncatula HOM05D007995 ORTHO05D001819 3.3e-10 69.3 171 28.1
Phvul.007G271650 Phaseolus vulgaris HOM05D007995 ORTHO05D001819 3.3e-10 69.3 131 32.1
BcaC09g48680 Brassica carinata HOM05D003146 ORTHO05D001819 4.3e-10 68.9 146 32.9
Medtr6g023935 Medicago truncatula HOM05D007995 ORTHO05D001819 4.3e-10 68.9 165 30.9
Dinv29548 Davidia involucrata HOM05D003146 ORTHO05D001819 5.6e-10 68.6 178 31.5
MELO3C001272.2 Cucumis melo HOM05D003146 ORTHO05D001819 7.3e-10 68.2 126 33.3
Cc11_g04920 Coffea canephora HOM05D003146 ORTHO05D001819 1.2e-09 67.4 174 29.3
vmacro07979 Vaccinium macrocarpon HOM05D003146 ORTHO05D001819 1.6e-09 67.0 166 32.5
AT1G11362 Arabidopsis thaliana HOM05D008385 ORTHO05D010806 2.1e-09 66.6 171 29.8
Rhsim07G0095800 Rhododendron simsii HOM05D003146 ORTHO05D001819 2.1e-09 66.6 121 31.4
Sed0025474 Sechium edule HOM05D003146 ORTHO05D001819 2.1e-09 66.6 166 26.5
TPR.G32889 Trifolium pratense HOM05D007995 ORTHO05D001819 2.1e-09 66.6 166 26.5
Thecc.10G106100 Theobroma cacao HOM05D015467 ORTHO05D001819 2.8e-09 66.2 181 26.0
BraA01t03769Z Brassica rapa HOM05D003146 ORTHO05D001819 3.6e-09 65.9 125 32.8
Medtr6g023915 Medicago truncatula HOM05D007995 ORTHO05D001819 3.6e-09 65.9 165 30.3
Ca_31166_v3 Cicer arietinum L. HOM05D007995 ORTHO05D001819 8.1e-09 64.7 134 31.3
MELO3C027589.2 Cucumis melo HOM05D003146 ORTHO05D001819 8.1e-09 64.7 130 33.8
MELO3C028053.2 Cucumis melo HOM05D003146 ORTHO05D001819 8.1e-09 64.7 137 33.6
Sopen09g028760 Solanum pennellii HOM05D003146 ORTHO05D001819 8.1e-09 64.7 151 26.5
Solyc09g072950.1 Solanum lycopersicum HOM05D003146 ORTHO05D001819 1.1e-08 64.3 145 28.3
Lj3g0018744 Lotus japonicus HOM05D007995 ORTHO05D001819 1.4e-08 63.9 139 32.4
CsaV3_6G020170 Cucumis sativus L. HOM05D003146 ORTHO05D001819 1.8e-08 63.5 124 33.9
PGSC0003DMG400034620 Solanum tuberosum HOM05D003146 ORTHO05D001819 3.1e-08 62.8 151 27.8
CsaV3_UNG044260 Cucumis sativus L. HOM05D003146 ORTHO05D001819 4.0e-08 62.4 113 34.5
CsaV3_UNG083670 Cucumis sativus L. HOM05D003146 ORTHO05D001819 4.0e-08 62.4 113 34.5
PGSC0003DMG400003833 Solanum tuberosum HOM05D003146 ORTHO05D001819 4.0e-08 62.4 151 25.2
MELO3C027625.2 Cucumis melo HOM05D003146 ORTHO05D001819 6.8e-08 61.6 118 31.4
QL08p052685 Quercus lobata HOM05D003146 ORTHO05D001819 6.8e-08 61.6 172 28.5
QL08p052692 Quercus lobata HOM05D003146 ORTHO05D001819 6.8e-08 61.6 172 28.5
COL.COLO4_04545 Corchorus olitorius HOM05D015467 ORTHO05D001819 8.9e-08 61.2 181 27.1
Hma1.2p1_1096F.1_g256660 Hydrangea macrophylla HOM05D003146 ORTHO05D001819 1.2e-07 60.8 143 29.4
Dinv22851 Davidia involucrata HOM05D009438 ORTHO05D010870 1.5e-07 60.5 144 29.2
Dinv22852 Davidia involucrata HOM05D009438 ORTHO05D010870 1.5e-07 60.5 144 29.2
Dinv22853 Davidia involucrata HOM05D009438 ORTHO05D010870 1.5e-07 60.5 144 29.2
MELO3C034826.2 Cucumis melo HOM05D003146 ORTHO05D001819 2.0e-07 60.1 86 36.0
Dinv22850 Davidia involucrata HOM05D009438 ORTHO05D010870 2.0e-07 60.1 144 29.2
COL.COLO4_11312 Corchorus olitorius HOM05D015467 ORTHO05D001819 4.4e-07 58.9 171 26.9
Actinidia36483 Actinidia chinensis HOM05D000573 ORTHO05D001819 5.8e-07 58.5 150 24.7
MD16G1147400 Malus domestica HOM05D003146 ORTHO05D001819 7.6e-07 58.2 137 27.7
COL.COLO4_24558 Corchorus olitorius HOM05D015467 ORTHO05D001819 9.9e-07 57.8 171 27.5
CsaV3_6G021230 Cucumis sativus L. HOM05D003146 ORTHO05D001819 9.9e-07 57.8 165 27.3
Cpa.g.sc48.109 Carica papaya HOM05D003556 ORTHO05D003404 1.3e-06 57.4 164 29.3
Dinv22854 Davidia involucrata HOM05D009438 ORTHO05D010870 1.3e-06 57.4 178 26.4
QL04p005594 Quercus lobata HOM05D003146 ORTHO05D001819 1.3e-06 57.4 151 23.8
Carub.0008s1110 Capsella rubella HOM05D008385 ORTHO05D010806 1.7e-06 57.0 181 26.5
Migut.I00086 Erythranthe guttata HOM05D062370 ORTHO05D001819 1.7e-06 57.0 150 29.3
Lalb_Chr22g0356001 Lupinus albus HOM05D007995 ORTHO05D001819 2.2e-06 56.6 133 28.6
Carub.0006s3013 Capsella rubella HOM05D008385 ORTHO05D010806 2.9e-06 56.2 178 26.4
COL.COLO4_24557 Corchorus olitorius HOM05D015467 ORTHO05D001819 2.9e-06 56.2 174 27.6
CAN.G111.34 Capsicum annuum HOM05D011410 ORTHO05D013015 3.8e-06 55.8 127 31.5
Ciclev10033748m.g Citrus clementina HOM05D003146 ORTHO05D001819 3.8e-06 55.8 165 25.5
COL.COLO4_04546 Corchorus olitorius HOM05D015467 ORTHO05D001819 3.8e-06 55.8 172 26.7
TPR.G16188 Trifolium pratense HOM05D007995 ORTHO05D001819 4.9e-06 55.5 108 32.4
Actinidia14750 Actinidia chinensis HOM05D009438 ORTHO05D010870 8.4e-06 54.7 138 23.9
MELO3C027826.2 Cucumis melo HOM05D003146 ORTHO05D001819 8.4e-06 54.7 82 35.4
Hma1.2p1_3273F.1_g334810 Hydrangea macrophylla HOM05D003146 ORTHO05D001819 8.4e-06 54.7 130 30.8
Hma1.2p1_3469F.1_g336200 Hydrangea macrophylla HOM05D003146 ORTHO05D001819 8.4e-06 54.7 130 30.8


User provided reference genes

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