Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR037420 Cardamine hirsuta HOM05D007627 ORTHO05D009640 1.5e-43 179.1 92 100.0
Thhalv10011898m.g Eutrema salsugineum HOM05D007627 ORTHO05D009640 9.4e-33 143.3 95 82.1
Carub.0001s3677 Capsella rubella HOM05D007627 ORTHO05D009640 1.7e-29 132.5 98 77.6
AT1G47820 Arabidopsis thaliana HOM05D007627 ORTHO05D009640 2.8e-29 131.7 97 78.4
AL1G54240 Arabidopsis lyrata HOM05D007627 ORTHO05D009640 4.8e-29 131.0 96 76.0
Carub.0001s3680 Capsella rubella HOM05D007627 ORTHO05D009640 1.2e-27 126.3 99 76.8
BcaC08g42976 Brassica carinata HOM05D007627 ORTHO05D009640 2.9e-26 121.7 96 72.9
Carub.0001s3693 Capsella rubella HOM05D007627 ORTHO05D009640 6.5e-26 120.6 98 74.5
BcaB07g33814 Brassica carinata HOM05D007627 ORTHO05D009640 7.2e-25 117.1 96 70.8
Sp1g34810 Schrenkiella parvula HOM05D007627 ORTHO05D009640 2.1e-24 115.5 95 70.5
Aa31LG2G19210 Aethionema arabicum HOM05D007627 ORTHO05D009640 4.8e-21 104.4 93 63.4
Manes.05G003000 Manihot esculenta HOM05D007627 ORTHO05D009640 1.9e-17 92.4 94 52.1
Medtr7g007290 Medicago truncatula HOM05D007627 ORTHO05D009640 4.7e-16 87.8 94 52.1
Ca_04047_v3 Cicer arietinum L. HOM05D007627 ORTHO05D009640 8.0e-16 87.0 93 53.8
FAN16G0578 Fragaria x ananassa HOM05D007627 ORTHO05D009640 2.3e-15 85.5 95 50.5
CiPaw.07G117000 Carya illinoinensis HOM05D007627 ORTHO05D009640 3.0e-15 85.1 91 52.7
Haze_05035 Corylus avellana HOM05D007627 ORTHO05D009640 3.0e-15 85.1 89 55.1
FvH4_3g25590 Fragaria vesca HOM05D007627 ORTHO05D009640 1.2e-14 83.2 95 49.5
FAN11G3818 Fragaria x ananassa HOM05D007627 ORTHO05D009640 1.2e-14 83.2 95 49.5
RcHm_v2.0_Chr7g0241611 Rosa chinensis HOM05D007627 ORTHO05D009640 1.2e-14 83.2 94 52.1
Lalb_Chr04g0257421 Lupinus albus HOM05D007627 ORTHO05D009640 1.5e-14 82.8 94 53.2
Lalb_Chr10g0091241 Lupinus albus HOM05D007627 ORTHO05D009640 2.6e-14 82.0 94 52.1
QL02p088799 Quercus lobata HOM05D007627 ORTHO05D009640 2.6e-14 82.0 94 53.2
FAN21G2770 Fragaria x ananassa HOM05D007627 ORTHO05D009640 4.4e-14 81.3 95 49.5
FAN25G0556 Fragaria x ananassa HOM05D007627 ORTHO05D009640 4.4e-14 81.3 95 49.5
THA.LOC104824213 Tarenaya hassleriana HOM05D007627 ORTHO05D009640 5.7e-14 80.9 61 67.2
Actinidia21001 Actinidia chinensis HOM05D007627 ORTHO05D009640 9.8e-14 80.1 93 49.5
CANSAT78G1399 Cannabis sativa HOM05D007627 ORTHO05D009640 9.8e-14 80.1 95 52.6
Glyma.18G296500 Glycine max HOM05D007627 ORTHO05D009640 9.8e-14 80.1 91 52.7
Sabra14G0090000 Salix brachista HOM05D007627 ORTHO05D009640 9.8e-14 80.1 65 64.6
VMungo1383G2294 Vigna mungo HOM05D007627 ORTHO05D009640 9.8e-14 80.1 93 50.5
Ciclev10023058m.g Citrus clementina HOM05D007627 ORTHO05D009640 1.3e-13 79.7 94 51.1
Prupe.8G271600 Prunus persica HOM05D007627 ORTHO05D009640 1.7e-13 79.3 93 50.5
COL.COLO4_23238 Corchorus olitorius HOM05D007627 ORTHO05D009640 2.2e-13 79.0 82 52.4
Phvul.008G006000 Phaseolus vulgaris HOM05D007627 ORTHO05D009640 2.2e-13 79.0 94 50.0
Cfa005805 Carpinus fangiana HOM05D007627 ORTHO05D009640 4.9e-13 77.8 87 52.9
Dinv33113 Davidia involucrata HOM05D000361 ORTHO05D005006 6.3e-13 77.4 95 52.6
MD03G1295800 Malus domestica HOM05D007627 ORTHO05D009640 6.3e-13 77.4 81 51.9
arahy.Tifrunner.gnm1.ann1.2EH2S8 Arachis hypogaea HOM05D006497 ORTHO05D009640 1.1e-12 76.6 84 54.8
MELO3C010153.2 Cucumis melo HOM05D007627 ORTHO05D009640 1.1e-12 76.6 82 50.0
Atru.chr5.1007 Acer truncatum HOM05D007627 ORTHO05D009640 1.4e-12 76.3 95 47.4
Gohir.D11G114900 Gossypium hirsutum HOM05D007627 ORTHO05D009640 1.4e-12 76.3 82 47.6
Gorai.007G123100 Gossypium raimondii HOM05D007627 ORTHO05D009640 1.4e-12 76.3 82 47.6
Potri.014G121300 Populus trichocarpa HOM05D007627 ORTHO05D009640 1.8e-12 75.9 81 55.6
Thecc.01G312700 Theobroma cacao HOM05D007627 ORTHO05D009640 1.8e-12 75.9 85 49.4
Cfa005807 Carpinus fangiana HOM05D007627 ORTHO05D009640 2.4e-12 75.5 87 51.7
Sed0009470 Sechium edule HOM05D007627 ORTHO05D009640 2.4e-12 75.5 82 48.8
TPR.G35989 Trifolium pratense HOM05D007627 ORTHO05D009640 3.1e-12 75.1 93 50.5
Actinidia25845 Actinidia chinensis HOM05D007627 ORTHO05D009640 4.1e-12 74.7 93 47.3
Gohir.A11G109700 Gossypium hirsutum HOM05D007627 ORTHO05D009640 4.1e-12 74.7 82 46.3
CsaV3_1G045260 Cucumis sativus L. HOM05D007627 ORTHO05D009640 5.4e-12 74.3 82 48.8
Cc02_g30590 Coffea canephora HOM05D007627 ORTHO05D009640 7.0e-12 73.9 85 50.6
QL12p020023 Quercus lobata HOM05D007627 ORTHO05D009640 7.0e-12 73.9 95 51.6
Dinv10091 Davidia involucrata HOM05D007627 ORTHO05D009640 9.2e-12 73.6 76 52.6
ClCG10G011370 Citrullus lanatus HOM05D007627 ORTHO05D009640 1.2e-11 73.2 82 53.7
Sc17g0000480 Simmondsia chinensis HOM05D007627 ORTHO05D009640 1.2e-11 73.2 93 49.5
Psat3g205400 Pisum sativum HOM05D007627 ORTHO05D009640 2.7e-11 72.0 93 46.2
CSS0016321 Camellia sinensis var. sinensis HOM05D007627 ORTHO05D009640 3.5e-11 71.6 85 51.8
ECA248G3246 Erigeron canadensis HOM05D007627 ORTHO05D009640 3.5e-11 71.6 87 44.8
HanXRQChr01g0000791 Helianthus annuus HOM05D007627 ORTHO05D009640 3.5e-11 71.6 93 48.4
Lj1g0016177 Lotus japonicus HOM05D007627 ORTHO05D009640 3.5e-11 71.6 94 46.8
C06p02170 Brassica napus HOM05D007627 ORTHO05D009640 4.5e-11 71.2 96 51.0
A10p06200 Brassica napus HOM05D007627 ORTHO05D009640 5.9e-11 70.9 96 51.0
BraA10t42888Z Brassica rapa HOM05D007627 ORTHO05D009640 5.9e-11 70.9 96 51.0
Migut.B01085 Erythranthe guttata HOM05D007627 ORTHO05D009640 5.9e-11 70.9 79 53.2
Cpa.g.sc18.36 Carica papaya HOM05D007627 ORTHO05D009640 7.8e-11 70.5 78 44.9
CSS0031687 Camellia sinensis var. sinensis HOM05D007627 ORTHO05D009640 1.0e-10 70.1 85 50.6
Duzib192G0243 Durio zibethinus HOM05D007627 ORTHO05D009640 1.0e-10 70.1 84 48.8
Solyc01g097360.4 Solanum lycopersicum HOM05D007627 ORTHO05D009640 1.0e-10 70.1 81 50.6
Medtr7g007300 Medicago truncatula HOM05D000007 ORTHO05D000017 1.3e-10 69.7 72 50.0
Sopen01g041030 Solanum pennellii HOM05D007627 ORTHO05D009640 1.3e-10 69.7 81 50.6
DCAR_005763 Daucus carota HOM05D000361 ORTHO05D005006 1.7e-10 69.3 82 51.2
CAN.G134.101 Capsicum annuum HOM05D007627 ORTHO05D009640 2.3e-10 68.9 92 45.7
Rhsim01G0290400 Rhododendron simsii HOM05D007627 ORTHO05D009640 2.3e-10 68.9 93 45.2
TAR381G1624 Trochodendron aralioides HOM05D007627 ORTHO05D009640 5.0e-10 67.8 93 46.2
AT1G47813 Arabidopsis thaliana HOM05D007627 ORTHO05D009640 6.6e-10 67.4 95 52.6
MSTRG.21216 Avicennia marina HOM05D007627 ORTHO05D009640 8.6e-10 67.0 77 50.6
Eucgr.H01048 Eucalyptus grandis HOM05D007627 ORTHO05D009640 1.1e-09 66.6 93 45.2
Hma1.2p1_0212F.1_g089970 Hydrangea macrophylla HOM05D007627 ORTHO05D009640 1.1e-09 66.6 74 48.6
BolC6t35346H Brassica oleracea HOM05D007627 ORTHO05D009640 1.5e-09 66.2 96 51.0
Nitab4.5_0012228g0040 Nicotiana tabacum HOM05D007627 ORTHO05D009640 1.5e-09 66.2 85 48.2
PGR119G1365 Punica granatum HOM05D007627 ORTHO05D009640 1.9e-09 65.9 80 48.8
SalBow8G4146 Salvia bowleyana HOM05D007627 ORTHO05D009640 5.6e-09 64.3 90 44.4
Nitab4.5_0001592g0100 Nicotiana tabacum HOM05D007627 ORTHO05D009640 7.3e-09 63.9 83 48.2
Os06g0717300 Oryza sativa ssp. japonica HOM05D007627 ORTHO05D009640 2.1e-08 62.4 80 47.5
Peaxi162Scf00282g00336 Petunia axillaris HOM05D007627 ORTHO05D009640 2.1e-08 62.4 79 48.1
HPP92_022749 Vanilla planifolia HOM05D007627 ORTHO05D009640 2.1e-08 62.4 79 45.6
Ah.10g033580 Amaranthus hybridus HOM05D004014 ORTHO05D005890 8.0e-08 60.5 81 46.9
Lsat_1_v5_gn_5_191420 Lactuca sativa HOM05D007627 ORTHO05D009640 8.0e-08 60.5 63 49.2
unitig_578.g15942 Utricularia gibba HOM05D007627 ORTHO05D009640 8.0e-08 60.5 84 44.0
HanXRQChr11g0329361 Helianthus annuus HOM05D007627 ORTHO05D009640 1.0e-07 60.1 89 42.7
EL10Ac2g03554 Beta vulgaris HOM05D007627 ORTHO05D009640 1.4e-07 59.7 90 47.8
PSO700G0179 Papaver somniferum HOM05D007627 ORTHO05D009640 1.4e-07 59.7 70 50.0
Zm00001eb228130 Zea mays HOM05D007627 ORTHO05D009640 1.4e-07 59.7 83 45.8
Oeu038438.1 Olea europaea HOM05D007627 ORTHO05D009640 1.8e-07 59.3 93 44.1
Aqoxy1G00002 Aquilegia oxysepala HOM05D007627 ORTHO05D009640 6.8e-07 57.4 79 44.3
AUR62037635 Chenopodium quinoa HOM05D007627 ORTHO05D009640 1.2e-06 56.6 79 44.3
AUR62044233 Chenopodium quinoa HOM05D007627 ORTHO05D009640 2.6e-06 55.5 79 44.3


User provided reference genes

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