Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR037270 Cardamine hirsuta HOM05D005468 ORTHO05D006789 1.9e-92 342.4 169 100.0
BcaB07g33823 Brassica carinata HOM05D005468 ORTHO05D006789 1.6e-83 312.8 162 95.1
BcaC08g42963 Brassica carinata HOM05D005468 ORTHO05D006789 1.6e-83 312.8 162 95.1
C06p02040 Brassica napus HOM05D005468 ORTHO05D006789 1.6e-83 312.8 162 95.1
BraA10t42894Z Brassica rapa HOM05D005468 ORTHO05D006789 1.6e-83 312.8 162 95.1
Sp1g34660 Schrenkiella parvula HOM05D005468 ORTHO05D006789 2.2e-83 312.4 162 95.1
AL1G54040 Arabidopsis lyrata HOM05D005468 ORTHO05D006789 3.7e-83 311.6 162 95.1
Thhalv10011754m.g Eutrema salsugineum HOM05D005468 ORTHO05D006789 4.8e-83 311.2 162 94.4
AT1G47640 Arabidopsis thaliana HOM05D005468 ORTHO05D006789 1.1e-82 310.1 162 94.4
BolC6t35332H Brassica oleracea HOM05D005468 ORTHO05D006789 1.1e-82 310.1 161 95.0
Carub.0001s3642 Capsella rubella HOM05D005468 ORTHO05D006789 1.8e-82 309.3 162 94.4
BcaC07g37205 Brassica carinata HOM05D005468 ORTHO05D006789 6.9e-82 307.4 162 93.2
BraA08t32559Z Brassica rapa HOM05D005468 ORTHO05D006789 6.9e-82 307.4 162 93.8
A08p05550 Brassica napus HOM05D005468 ORTHO05D006789 9.0e-82 307.0 162 93.8
Aa31sc119G90 Aethionema arabicum HOM05D005468 ORTHO05D006789 1.2e-81 306.6 162 92.0
BolC8t47397H Brassica oleracea HOM05D005468 ORTHO05D006789 1.2e-81 306.6 162 93.8
C08p06100 Brassica napus HOM05D005468 ORTHO05D006789 2.2e-80 302.4 162 92.6
A10p06260 Brassica napus HOM05D005468 ORTHO05D006789 4.2e-79 298.1 189 81.5
arahy.Tifrunner.gnm1.ann1.P2WCGJ Arachis hypogaea HOM05D005468 ORTHO05D006789 1.4e-77 293.1 162 88.9
arahy.Tifrunner.gnm1.ann1.Y0EE8X Arachis hypogaea HOM05D005468 ORTHO05D006789 1.4e-77 293.1 162 88.9
Duzib116G0868 Durio zibethinus HOM05D005468 ORTHO05D006789 5.1e-77 291.2 162 87.0
Manes.18G025300 Manihot esculenta HOM05D005468 ORTHO05D006789 5.1e-77 291.2 160 86.9
CARHR054190 Cardamine hirsuta HOM05D005468 ORTHO05D006789 8.8e-77 290.4 162 87.0
CANSAT56G1446 Cannabis sativa HOM05D005468 ORTHO05D006789 1.1e-76 290.0 160 86.2
Lalb_Chr23g0266811 Lupinus albus HOM05D005468 ORTHO05D006789 1.1e-76 290.0 162 87.0
Cc10_g03660 Coffea canephora HOM05D005468 ORTHO05D006789 1.5e-76 289.7 160 87.5
CsaV3_3G044590 Cucumis sativus L. HOM05D005468 ORTHO05D006789 1.5e-76 289.7 162 86.4
Eucgr.F02400 Eucalyptus grandis HOM05D005468 ORTHO05D006789 1.5e-76 289.7 160 86.9
Ca_15981_v3 Cicer arietinum L. HOM05D005468 ORTHO05D006789 2.0e-76 289.3 162 87.0
Duzib093G1518 Durio zibethinus HOM05D005468 ORTHO05D006789 2.0e-76 289.3 160 87.5
Ciclev10002374m.g Citrus clementina HOM05D005468 ORTHO05D006789 2.5e-76 288.9 160 87.5
Psat5g045200 Pisum sativum HOM05D005468 ORTHO05D006789 3.3e-76 288.5 162 86.4
Prupe.1G387900 Prunus persica HOM05D005468 ORTHO05D006789 3.3e-76 288.5 160 86.9
Hma1.2p1_0260F.1_g104510 Hydrangea macrophylla HOM05D005468 ORTHO05D006789 4.3e-76 288.1 160 86.9
PGR031G2816 Punica granatum HOM05D005468 ORTHO05D006789 4.3e-76 288.1 159 87.4
SalBow8G4730 Salvia bowleyana HOM05D005468 ORTHO05D006789 4.3e-76 288.1 160 87.5
Sabra02G0102000 Salix brachista HOM05D005468 ORTHO05D006789 5.7e-76 287.7 160 86.2
Sabra14G0026700 Salix brachista HOM05D005468 ORTHO05D006789 5.7e-76 287.7 160 86.2
FAN27G0003 Fragaria x ananassa HOM05D005468 ORTHO05D006789 7.4e-76 287.3 162 85.8
Phvul.009G061800 Phaseolus vulgaris HOM05D005468 ORTHO05D006789 7.4e-76 287.3 162 86.4
Rhsim06G0040800 Rhododendron simsii HOM05D005468 ORTHO05D006789 7.4e-76 287.3 160 86.9
THA.LOC104813200 Tarenaya hassleriana HOM05D005468 ORTHO05D006789 7.4e-76 287.3 160 86.2
Potri.002G130100 Populus trichocarpa HOM05D005468 ORTHO05D006789 9.7e-76 287.0 160 86.2
THA.LOC104803401 Tarenaya hassleriana HOM05D005468 ORTHO05D006789 9.7e-76 287.0 160 84.4
vmacro21583 Vaccinium macrocarpon HOM05D005468 ORTHO05D006789 9.7e-76 287.0 160 86.9
FvH4_2g40630 Fragaria vesca HOM05D005468 ORTHO05D006789 1.3e-75 286.6 160 86.2
FAN20G0953 Fragaria x ananassa HOM05D005468 ORTHO05D006789 1.3e-75 286.6 160 86.2
Lj1g0015279 Lotus japonicus HOM05D005468 ORTHO05D006789 1.3e-75 286.6 162 85.8
Thecc.08G017100 Theobroma cacao HOM05D005468 ORTHO05D006789 1.3e-75 286.6 160 86.9
TWI56G0523 Tripterygium wilfordii HOM05D005468 ORTHO05D006789 1.3e-75 286.6 160 86.2
Gohir.A05G198900 Gossypium hirsutum HOM05D005468 ORTHO05D006789 1.7e-75 286.2 159 86.8
Gohir.D05G201600 Gossypium hirsutum HOM05D005468 ORTHO05D006789 1.7e-75 286.2 159 86.8
Gorai.009G207300 Gossypium raimondii HOM05D005468 ORTHO05D006789 1.7e-75 286.2 159 86.8
Cpa.g.sc64.18 Carica papaya HOM05D005468 ORTHO05D006789 2.2e-75 285.8 160 86.9
Cfa018481 Carpinus fangiana HOM05D005468 ORTHO05D006789 2.2e-75 285.8 160 85.6
Glyma.04G035800 Glycine max HOM05D005468 ORTHO05D006789 2.2e-75 285.8 162 86.4
Glyma.06G035800 Glycine max HOM05D005468 ORTHO05D006789 2.2e-75 285.8 162 86.4
QL02p006494 Quercus lobata HOM05D005468 ORTHO05D006789 2.2e-75 285.8 160 84.4
Hund26608 Selenicereus undatus HOM05D005468 ORTHO05D006789 2.2e-75 285.8 162 85.8
VMungo1309G2021 Vigna mungo HOM05D005468 ORTHO05D006789 2.2e-75 285.8 162 86.4
GSVIVG01009588001 Vitis vinifera HOM05D005468 ORTHO05D006789 2.2e-75 285.8 160 86.2
COL.COLO4_26415 Corchorus olitorius HOM05D005468 ORTHO05D006789 2.8e-75 285.4 160 85.6
Dinv36016 Davidia involucrata HOM05D005468 ORTHO05D006789 2.8e-75 285.4 167 83.8
Migut.N02685 Erythranthe guttata HOM05D005468 ORTHO05D006789 2.8e-75 285.4 160 85.6
RcHm_v2.0_Chr6g0300041 Rosa chinensis HOM05D005468 ORTHO05D006789 2.8e-75 285.4 160 85.6
Sc15g0006600 Simmondsia chinensis HOM05D005468 ORTHO05D006789 2.8e-75 285.4 162 85.2
CiPaw.16G051900 Carya illinoinensis HOM05D005468 ORTHO05D006789 3.7e-75 285.0 160 85.6
FAN15G3574 Fragaria x ananassa HOM05D005468 ORTHO05D006789 3.7e-75 285.0 160 85.0
Gohir.D06G013000 Gossypium hirsutum HOM05D005468 ORTHO05D006789 3.7e-75 285.0 160 86.2
Gorai.010G015600 Gossypium raimondii HOM05D005468 ORTHO05D006789 3.7e-75 285.0 160 86.2
Sed0015581 Sechium edule HOM05D005468 ORTHO05D006789 3.7e-75 285.0 161 85.1
TAR381G1584 Trochodendron aralioides HOM05D005468 ORTHO05D006789 3.7e-75 285.0 162 83.3
MSTRG.22278 Avicennia marina HOM05D005468 ORTHO05D006789 4.8e-75 284.6 160 86.9
TAR625G1030 Trochodendron aralioides HOM05D005468 ORTHO05D006789 4.8e-75 284.6 162 84.6
Atru.chr13.591 Acer truncatum HOM05D005468 ORTHO05D006789 6.3e-75 284.3 160 85.6
Actinidia38034 Actinidia chinensis HOM05D005468 ORTHO05D006789 6.3e-75 284.3 160 86.2
CiPaw.15G066600 Carya illinoinensis HOM05D005468 ORTHO05D006789 6.3e-75 284.3 160 85.0
Potri.014G037100 Populus trichocarpa HOM05D005468 ORTHO05D006789 6.3e-75 284.3 160 85.6
EL10Ac1g01754 Beta vulgaris HOM05D005468 ORTHO05D006789 8.2e-75 283.9 162 85.2
CAN.G1002.2 Capsicum annuum HOM05D005468 ORTHO05D006789 8.2e-75 283.9 160 84.4
Lalb_Chr08g0245731 Lupinus albus HOM05D005468 ORTHO05D006789 8.2e-75 283.9 162 85.2
SGA_v2.0_scaffold28G11772 Striga asiatica HOM05D005468 ORTHO05D006789 8.2e-75 283.9 160 85.0
Gohir.A06G015000 Gossypium hirsutum HOM05D005468 ORTHO05D006789 1.1e-74 283.5 160 86.2
Medtr3g100940 Medicago truncatula HOM05D005468 ORTHO05D006789 1.1e-74 283.5 160 85.6
Actinidia29851 Actinidia chinensis HOM05D005468 ORTHO05D006789 2.4e-74 282.3 160 84.4
Nn5g29408 Nelumbo nucifera HOM05D005468 ORTHO05D006789 2.4e-74 282.3 160 83.8
TPR.G26072 Trifolium pratense HOM05D005468 ORTHO05D006789 2.4e-74 282.3 160 85.6
Manes.05G168700 Manihot esculenta HOM05D005468 ORTHO05D006789 5.3e-74 281.2 160 84.4
MBI16_g31482_MAGBIO Magnolia biondii HOM05D005468 ORTHO05D006789 6.9e-74 280.8 159 84.3
Aqoxy6G00937 Aquilegia oxysepala HOM05D005468 ORTHO05D006789 9.1e-74 280.4 160 81.9
MD15G1034100 Malus domestica HOM05D005468 ORTHO05D006789 1.2e-73 280.0 160 82.5
Sopen12g030860 Solanum pennellii HOM05D005468 ORTHO05D006789 2.0e-73 279.3 160 82.5
PGSC0003DMG400015450 Solanum tuberosum HOM05D005468 ORTHO05D006789 2.0e-73 279.3 160 82.5
MSTRG.24315 Avicennia marina HOM05D005468 ORTHO05D006789 3.4e-73 278.5 160 83.1
Migut.C00650 Erythranthe guttata HOM05D005468 ORTHO05D006789 5.9e-73 277.7 160 82.5
Zm00001eb058600 Zea mays HOM05D005468 ORTHO05D006789 8.5e-72 273.9 159 80.5
Os03g0766000 Oryza sativa ssp. japonica HOM05D005468 ORTHO05D006789 1.1e-71 273.5 159 80.5
Nn6g32145 Nelumbo nucifera HOM05D005468 ORTHO05D006789 1.4e-71 273.1 167 79.0
HanXRQChr02g0046441 Helianthus annuus HOM05D005468 ORTHO05D006789 1.2e-70 270.0 159 81.1
CDE04G3466 Ceratophyllum demersum HOM05D005468 ORTHO05D006789 2.1e-70 269.2 161 78.3
Lsat_1_v5_gn_1_19180 Lactuca sativa HOM05D005468 ORTHO05D006789 3.6e-70 268.5 159 81.1
PSO170G5983 Papaver somniferum HOM05D005468 ORTHO05D006789 6.1e-70 267.7 162 78.4
PSO210G2601 Papaver somniferum HOM05D005468 ORTHO05D006789 6.1e-70 267.7 162 78.4
MD08G1039400 Malus domestica HOM05D005468 ORTHO05D006789 3.0e-69 265.4 160 80.0
Ah.03g134890 Amaranthus hybridus HOM05D005468 ORTHO05D006789 6.7e-69 264.2 153 82.4
Zm00001eb214040 Zea mays HOM05D005468 ORTHO05D006789 8.8e-69 263.8 159 77.4
Mapoly0136s0007 Marchantia polymorpha HOM05D005468 ORTHO05D006789 1.7e-67 259.6 159 76.1
BcaB04g17508 Brassica carinata HOM05D005468 ORTHO05D006789 2.2e-67 259.2 162 82.1
HPP92_019640 Vanilla planifolia HOM05D005468 ORTHO05D006789 9.1e-66 253.8 161 73.9
SEGI_18559 Sequoiadendron giganteum HOM05D005468 ORTHO05D006789 6.5e-64 247.7 143 81.1
SMO119G0125 Selaginella moellendorffii HOM05D005468 ORTHO05D006789 1.4e-63 246.5 158 72.2
SMO163G0011 Selaginella moellendorffii HOM05D005468 ORTHO05D006789 1.4e-63 246.5 158 72.2
Pp3c3_13070 Physcomitrium patens HOM05D005468 ORTHO05D006789 6.1e-62 241.1 161 67.7
CBR_g99 Chara braunii HOM05D005468 ORTHO05D006789 8.0e-62 240.7 158 69.6
ECA247G3714 Erigeron canadensis HOM05D005468 ORTHO05D006789 1.0e-61 240.4 141 80.9
CARHR034590 Cardamine hirsuta HOM05D005468 ORTHO05D006789 1.8e-61 239.6 131 88.5
Nitab4.5_0000790g0020 Nicotiana tabacum HOM05D005468 ORTHO05D006789 2.8e-59 232.3 189 65.6
unitig_26.g10028 Utricularia gibba HOM05D005468 ORTHO05D006789 2.8e-59 232.3 133 82.7
CSS0002701 Camellia sinensis var. sinensis HOM05D005468 ORTHO05D006789 1.8e-58 229.6 123 90.2
Nitab4.5_0000453g0110 Nicotiana tabacum HOM05D005468 ORTHO05D006789 1.8e-58 229.6 122 89.3
Haze_17591 Corylus avellana HOM05D005468 ORTHO05D006789 4.1e-58 228.4 124 87.9
ATR0733G175 Amborella trichopoda HOM05D005468 ORTHO05D006789 5.3e-58 228.0 125 88.8
Dinv39358 Davidia involucrata HOM05D005468 ORTHO05D006789 5.3e-58 228.0 123 88.6
Lj1C905G11 Lonicera japonica HOM05D001696 ORTHO05D001746 7.0e-58 227.6 122 88.5
Peaxi162Scf00064g00217 Petunia axillaris HOM05D005468 ORTHO05D006789 9.1e-58 227.3 119 91.6
Atru.BG.240.p Acer truncatum HOM05D005468 ORTHO05D006789 2.0e-57 226.1 118 91.5
AUR62033873 Chenopodium quinoa HOM05D005468 ORTHO05D006789 1.9e-55 219.5 316 43.7
Migut.O00871 Erythranthe guttata HOM05D005468 ORTHO05D006789 1.4e-53 213.4 120 85.0
Sed0011570 Sechium edule HOM05D005468 ORTHO05D006789 8.8e-53 210.7 147 70.1
Oeu028451.1 Olea europaea HOM05D005468 ORTHO05D006789 9.7e-52 207.2 120 82.5
CARHR259240 Cardamine hirsuta HOM05D005468 ORTHO05D006789 6.6e-40 167.9 140 65.7
AagrBONN_evm.TU.Sc2ySwM_362.508 Anthoceros agrestis HOM05D005468 ORTHO05D006789 8.9e-29 131.0 123 55.3
arahy.Tifrunner.gnm1.ann1.N94XAP Arachis hypogaea HOM05D005468 ORTHO05D006789 4.3e-23 112.1 62 77.4
CAN.G371.92 Capsicum annuum HOM05D005468 ORTHO05D006789 1.2e-17 94.0 152 40.8
AUR62040094 Chenopodium quinoa HOM05D000023 ORTHO05D000014 1.5e-15 87.0 45 88.9
arahy.Tifrunner.gnm1.ann1.APL3GL Arachis hypogaea HOM05D005468 ORTHO05D006789 9.5e-15 84.3 66 63.6
Rhsim05G0183600 Rhododendron simsii HOM05D000190 ORTHO05D000113 8.1e-14 81.3 52 67.3
arahy.Tifrunner.gnm1.ann1.R2S7J0 Arachis hypogaea HOM05D005468 ORTHO05D004485 3.4e-12 75.9 64 57.8


User provided reference genes

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