Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR037200 Cardamine hirsuta HOM05D006254 ORTHO05D007409 3.0e-284 981.1 465 100.0
Carub.0001s3633 Capsella rubella HOM05D006254 ORTHO05D007409 9.3e-246 853.2 461 86.6
AT1G47570 Arabidopsis thaliana HOM05D006254 ORTHO05D007409 3.0e-244 848.2 461 86.1
Sp4g18960 Schrenkiella parvula HOM05D006254 ORTHO05D007409 4.0e-241 837.8 462 83.1
BcaB02g09339 Brassica carinata HOM05D006254 ORTHO05D007409 2.7e-237 825.1 466 82.8
BcaB02g09340 Brassica carinata HOM05D006254 ORTHO05D007409 3.0e-236 821.6 466 82.4
BcaC02g11789 Brassica carinata HOM05D006254 ORTHO05D007409 9.0e-233 810.1 465 81.9
C04p11350 Brassica napus HOM05D006254 ORTHO05D007409 9.0e-233 810.1 465 81.9
BolC4t22773H Brassica oleracea HOM05D006254 ORTHO05D007409 8.5e-231 803.5 471 80.9
A05p09180 Brassica napus HOM05D006254 ORTHO05D007409 3.2e-230 801.6 487 78.6
BraA05t19873Z Brassica rapa HOM05D006254 ORTHO05D007409 7.2e-230 800.4 490 78.2
Thhalv10016597m.g Eutrema salsugineum HOM05D006254 ORTHO05D007409 1.6e-229 799.3 440 83.9
BolC4t22794H Brassica oleracea HOM05D006254 ORTHO05D007409 6.1e-229 797.3 491 77.0
THA.LOC104803663 Tarenaya hassleriana HOM05D006254 ORTHO05D007409 3.2e-198 695.3 463 69.8
AL1G53850 Arabidopsis lyrata HOM05D006254 ORTHO05D007409 3.0e-188 662.1 348 87.1
Dinv02479 Davidia involucrata HOM05D006254 ORTHO05D007409 7.3e-182 641.0 459 62.7
QL10p038598 Quercus lobata HOM05D006254 ORTHO05D007409 2.0e-179 632.9 460 61.5
Potri.004G137900 Populus trichocarpa HOM05D006254 ORTHO05D007409 3.9e-175 618.6 466 60.1
HanXRQChr01g0017761 Helianthus annuus HOM05D006254 ORTHO05D007409 6.6e-175 617.8 458 61.6
Cfa002251 Carpinus fangiana HOM05D006254 ORTHO05D007409 1.6e-173 613.2 461 58.4
CiPaw.04G178100 Carya illinoinensis HOM05D006254 ORTHO05D007409 2.0e-171 606.3 460 57.6
Oeu011007.1 Olea europaea HOM05D006254 ORTHO05D007409 5.8e-171 604.7 462 60.0
ECA248G3109 Erigeron canadensis HOM05D006254 ORTHO05D007409 7.5e-171 604.4 457 60.4
CANSAT54G2690 Cannabis sativa HOM05D006254 ORTHO05D007409 8.3e-170 600.9 467 58.9
GSVIVG01000233001 Vitis vinifera HOM05D003183 ORTHO05D007409 2.4e-169 599.4 466 59.4
Prupe.6G059200 Prunus persica HOM05D006254 ORTHO05D007409 1.6e-168 596.7 460 58.3
MELO3C033099.2 Cucumis melo HOM05D006254 ORTHO05D007409 3.9e-167 592.0 460 60.2
TAR628G1014 Trochodendron aralioides HOM05D006254 ORTHO05D007409 6.6e-167 591.3 459 59.0
CsaV3_4G030320 Cucumis sativus L. HOM05D006254 ORTHO05D007409 1.5e-166 590.1 459 59.7
Eucgr.I00013 Eucalyptus grandis HOM05D006254 ORTHO05D007409 3.3e-166 589.0 459 58.6
MSTRG.23507 Avicennia marina HOM05D006254 ORTHO05D007409 4.3e-166 588.6 459 57.1
Gohir.A05G375400 Gossypium hirsutum HOM05D006254 ORTHO05D007409 4.3e-166 588.6 463 58.5
Gorai.012G045500 Gossypium raimondii HOM05D006254 ORTHO05D007409 4.3e-166 588.6 463 58.3
Ca_17588_v3 Cicer arietinum L. HOM05D006254 ORTHO05D007409 9.5e-166 587.4 453 58.3
VMungo0251G0787 Vigna mungo HOM05D006254 ORTHO05D007409 8.1e-165 584.3 474 55.5
PGR119G0951 Punica granatum HOM05D006254 ORTHO05D007409 5.2e-164 581.6 460 57.4
PSO017G1045 Papaver somniferum HOM05D006254 ORTHO05D007409 8.9e-164 580.9 463 58.1
arahy.Tifrunner.gnm1.ann1.ZNEY68 Arachis hypogaea HOM05D006254 ORTHO05D007409 1.2e-163 580.5 460 56.1
MD03G1072300 Malus domestica HOM05D006254 ORTHO05D007409 1.5e-163 580.1 459 56.6
arahy.Tifrunner.gnm1.ann1.9169VS Arachis hypogaea HOM05D006254 ORTHO05D007409 2.6e-163 579.3 460 56.5
TPR.G12754 Trifolium pratense HOM05D006254 ORTHO05D007409 5.8e-163 578.2 461 56.0
Migut.H00776 Erythranthe guttata HOM05D006254 ORTHO05D007409 9.9e-163 577.4 461 56.6
Peaxi162Scf00030g00012 Petunia axillaris HOM05D006254 ORTHO05D007409 1.3e-162 577.0 441 59.9
Sopen03g020950 Solanum pennellii HOM05D006254 ORTHO05D007409 4.9e-162 575.1 459 58.2
Lj4g0026953 Lotus japonicus HOM05D006254 ORTHO05D007409 1.9e-161 573.2 458 55.9
Cc07_g20930 Coffea canephora HOM05D006254 ORTHO05D007409 3.2e-161 572.4 497 54.9
FAN21G3787 Fragaria x ananassa HOM05D006254 ORTHO05D007409 4.1e-161 572.0 469 56.9
Sc20g0000720 Simmondsia chinensis HOM05D006254 ORTHO05D007409 7.1e-161 571.2 470 56.0
Solyc03g078230.3 Solanum lycopersicum HOM05D006254 ORTHO05D007409 2.1e-160 569.7 459 57.5
Lalb_Chr12g0202731 Lupinus albus HOM05D006254 ORTHO05D007409 6.0e-160 568.2 460 55.7
FvH4_3g38370 Fragaria vesca HOM05D006254 ORTHO05D007409 1.1e-158 563.9 469 56.1
Lsat_1_v5_gn_1_78401 Lactuca sativa HOM05D006254 ORTHO05D007409 1.5e-158 563.5 434 58.8
FAN25G1911 Fragaria x ananassa HOM05D006254 ORTHO05D007409 2.5e-158 562.8 469 56.5
Medtr8g095410 Medicago truncatula HOM05D006254 ORTHO05D007409 2.5e-158 562.8 456 56.4
TWI31G0260 Tripterygium wilfordii HOM05D006254 ORTHO05D007409 3.3e-158 562.4 423 60.0
EL10Ac4g08984 Beta vulgaris HOM05D006254 ORTHO05D007409 4.7e-157 558.5 492 53.9
Aqoxy5G02669 Aquilegia oxysepala HOM05D006254 ORTHO05D007409 8.9e-156 554.3 462 54.8
FAN11G0663 Fragaria x ananassa HOM05D006254 ORTHO05D007409 6.4e-154 548.1 462 55.4
Gohir.D04G040400 Gossypium hirsutum HOM05D006254 ORTHO05D007409 3.3e-150 535.8 463 54.4
DCAR_009615 Daucus carota HOM05D006254 ORTHO05D007409 4.0e-148 528.9 418 57.9
RcHm_v2.0_Chr5g0068971 Rosa chinensis HOM05D006254 ORTHO05D007409 7.6e-147 524.6 468 53.8
Psat7g040840 Pisum sativum HOM05D006254 ORTHO05D007409 1.2e-139 500.7 392 56.6
FAN16G1494 Fragaria x ananassa HOM05D006254 ORTHO05D007409 2.0e-139 500.0 441 54.0
Phvul.002G279100 Phaseolus vulgaris HOM05D006254 ORTHO05D007409 5.8e-139 498.4 413 54.2
Thecc.01G235200 Theobroma cacao HOM05D006254 ORTHO05D007409 5.8e-139 498.4 407 56.5
CSS0012450 Camellia sinensis var. sinensis HOM05D006254 ORTHO05D007409 2.7e-136 489.6 345 63.5
Zm00001eb200940 Zea mays HOM05D006254 ORTHO05D007409 3.5e-136 489.2 469 49.9
Manes.12G085200 Manihot esculenta HOM05D006254 ORTHO05D007409 6.7e-135 485.0 352 61.9
Os11g0175500 Oryza sativa ssp. japonica HOM05D006254 ORTHO05D007409 2.5e-134 483.0 507 47.1
Ah.04g163200 Amaranthus hybridus HOM05D006254 ORTHO05D007409 1.5e-131 473.8 460 50.4
Nitab4.5_0012738g0010 Nicotiana tabacum HOM05D006254 ORTHO05D007409 3.4e-131 472.6 576 43.4
Ciclev10024761m.g Citrus clementina HOM05D003183 ORTHO05D003697 4.9e-130 468.8 377 56.8
SGA_v2.0_scaffold54G19570 Striga asiatica HOM05D006254 ORTHO05D007409 1.4e-129 467.2 515 46.0
AUR62036036 Chenopodium quinoa HOM05D006254 ORTHO05D007409 3.2e-129 466.1 541 42.9
Aa31LG5G9250 Aethionema arabicum HOM05D006254 ORTHO05D007409 5.7e-126 455.3 258 80.6
Rhsim09G0131600 Rhododendron simsii HOM05D006254 ORTHO05D007409 1.3e-125 454.1 345 60.3
Glyma.05G198100 Glycine max HOM05D006254 ORTHO05D007409 4.8e-125 452.2 387 51.9
HanXRQChr01g0017751 Helianthus annuus HOM05D006254 ORTHO05D007409 5.0e-122 442.2 442 47.5
Sed0010974 Sechium edule HOM05D006254 ORTHO05D007409 2.5e-121 439.9 378 55.6
Sabra04G0089300 Salix brachista HOM05D006254 ORTHO05D007409 2.3e-119 433.3 577 40.9
Migut.H00777 Erythranthe guttata HOM05D006254 ORTHO05D007409 3.3e-118 429.5 394 51.8
CDE06G2483 Ceratophyllum demersum HOM05D006254 ORTHO05D007409 2.0e-115 420.2 396 50.3
RcHm_v2.0_Chr2g0157071 Rosa chinensis HOM05D006254 ORTHO05D007409 2.2e-114 416.8 370 54.3
HPP92_016136 Vanilla planifolia HOM05D006254 ORTHO05D007409 1.1e-108 397.9 454 45.8
Atru.chr4.972 Acer truncatum HOM05D006254 ORTHO05D007409 4.1e-108 396.0 338 53.6
MD11G1077300 Malus domestica HOM05D006254 ORTHO05D007409 3.4e-107 392.9 377 49.9
Nitab4.5_0000004g0230 Nicotiana tabacum HOM05D006254 ORTHO05D007409 2.5e-105 386.7 480 44.2
MD11G1078600 Malus domestica HOM05D006254 ORTHO05D007409 4.2e-97 359.4 412 43.0
AUR62004819 Chenopodium quinoa HOM05D006254 ORTHO05D007409 1.9e-89 334.0 414 41.1
Haze_25433 Corylus avellana HOM05D006254 ORTHO05D007409 2.7e-80 303.5 239 57.7
vmacro10394 Vaccinium macrocarpon HOM05D006254 ORTHO05D007409 8.0e-80 302.0 302 49.3
Hma1.2p1_0057F.1_g032170 Hydrangea macrophylla HOM05D006254 ORTHO05D007409 1.4e-79 301.2 197 65.5
unitig_65.g29879 Utricularia gibba HOM05D006254 ORTHO05D007409 8.8e-79 298.5 455 37.6
Haze_25436 Corylus avellana HOM05D006254 ORTHO05D007409 6.6e-74 282.3 206 60.7
Actinidia34771 Actinidia chinensis HOM05D000969 ORTHO05D000899 1.8e-71 274.2 211 58.8
Hund06901 Selenicereus undatus HOM05D006254 ORTHO05D007409 8.9e-71 271.9 261 50.2
Cpa.g.sc138.23 Carica papaya HOM05D006254 ORTHO05D007409 7.5e-70 268.9 168 69.0
unitig_62.g23450 Utricularia gibba HOM05D006254 ORTHO05D007409 1.3e-69 268.1 496 34.3
MD00G1120300 Malus domestica HOM05D006254 ORTHO05D007409 1.1e-68 265.0 259 50.2
MD11G1077500 Malus domestica HOM05D006254 ORTHO05D007409 2.0e-67 260.8 298 44.0
Migut.H00787 Erythranthe guttata HOM05D006254 ORTHO05D007409 3.6e-64 250.0 221 53.4
Lj4g0022315 Lotus japonicus HOM05D006254 ORTHO05D007409 4.4e-62 243.0 229 53.3
Mapoly0003s0196 Marchantia polymorpha HOM05D006254 ORTHO05D007409 1.0e-58 231.9 509 30.3
MD00G1120800 Malus domestica HOM05D006254 ORTHO05D007409 4.7e-56 223.0 158 62.7
MD11G1078400 Malus domestica HOM05D006254 ORTHO05D007409 4.0e-55 219.9 158 62.0
AagrBONN_evm.TU.Sc2ySwM_117.2849 Anthoceros agrestis HOM05D006254 ORTHO05D007409 3.4e-54 216.9 430 31.6
BolC4t22792H Brassica oleracea HOM05D006254 ORTHO05D007409 1.6e-51 208.0 150 69.3
SEGI_09568 Sequoiadendron giganteum HOM05D006254 ORTHO05D007409 4.0e-39 166.8 236 39.0
AagrBONN_evm.TU.Sc2ySwM_228.4097 Anthoceros agrestis HOM05D006254 ORTHO05D007409 2.6e-38 164.1 298 32.9
ATR0584G026 Amborella trichopoda HOM05D006254 ORTHO05D007409 1.1e-36 158.7 178 42.1
RcHm_v2.0_Chr2g0157061 Rosa chinensis HOM05D006254 ORTHO05D007409 7.3e-33 146.0 92 67.4
Duzib264G1273 Durio zibethinus HOM05D006254 ORTHO05D007409 1.1e-31 142.1 78 76.9
Haze_25432 Corylus avellana HOM05D006254 ORTHO05D007409 1.8e-31 141.4 250 31.2
Haze_25431 Corylus avellana HOM05D006254 ORTHO05D007409 4.0e-31 140.2 250 31.2
CBR_g38543 Chara braunii HOM05D006254 ORTHO05D007409 2.0e-30 137.9 443 25.1
HanXRQChr02g0035161 Helianthus annuus HOM05D006254 ORTHO05D007409 1.3e-24 118.6 108 49.1
AL1G53840 Arabidopsis lyrata HOM05D003114 ORTHO05D003519 1.6e-24 118.2 108 62.0
Nn1g08418 Nelumbo nucifera HOM05D006254 ORTHO05D007409 8.1e-24 115.9 88 54.5
ClCG04G002460 Citrullus lanatus HOM05D006254 ORTHO05D007409 3.1e-23 114.0 103 53.4
MD11G1077000 Malus domestica HOM05D006254 ORTHO05D007409 9.9e-22 109.0 104 51.0
MD11G1077800 Malus domestica HOM05D006254 ORTHO05D007409 6.4e-21 106.3 68 63.2
AagrBONN_evm.TU.Sc2ySwM_228.4094 Anthoceros agrestis HOM05D006254 ORTHO05D007409 1.9e-20 104.8 260 26.9
HanXRQChr13g0399511 Helianthus annuus HOM05D006254 ORTHO05D007409 1.8e-18 98.2 96 47.9
Glyma.08G005450 Glycine max HOM05D006254 ORTHO05D007409 2.3e-18 97.8 76 55.3
PSO170G1462 Papaver somniferum HOM05D006254 ORTHO05D007409 3.3e-17 94.0 108 44.4
AagrBONN_evm.TU.Sc2ySwM_340.558 Anthoceros agrestis HOM05D002405 ORTHO05D002483 1.3e-16 92.0 222 25.7
Actinidia38917 Actinidia chinensis HOM05D006254 ORTHO05D007409 1.5e-14 85.1 117 40.2
GSVIVG01038034001 Vitis vinifera HOM05D001605 ORTHO05D007409 2.0e-14 84.7 57 57.9
BolC4t22791H Brassica oleracea HOM05D006254 ORTHO05D007409 4.5e-14 83.6 54 70.4
Os08g0123300 Oryza sativa ssp. japonica HOM05D006254 ORTHO05D007409 1.0e-13 82.4 94 45.7
arahy.Tifrunner.gnm1.ann1.SX6F5A Arachis hypogaea HOM05D006254 ORTHO05D007409 1.4e-12 78.6 83 47.0
Actinidia38918 Actinidia chinensis HOM05D006254 ORTHO05D007409 7.1e-12 76.3 39 79.5


User provided reference genes

Program Settings