Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR035970 Cardamine hirsuta HOM05D004006 ORTHO05D004585 8.2e-114 413.7 202 100.0
AL1G52380 Arabidopsis lyrata HOM05D004006 ORTHO05D004585 9.8e-83 310.5 203 81.3
Carub.0001s3524 Capsella rubella HOM05D004006 ORTHO05D004585 1.4e-73 280.0 207 71.0
BcaC08g42859 Brassica carinata HOM05D004006 ORTHO05D004585 2.6e-67 259.2 202 68.3
C06p00700 Brassica napus HOM05D004006 ORTHO05D004585 2.6e-67 259.2 202 68.3
BolC6t35208H Brassica oleracea HOM05D004006 ORTHO05D004585 3.4e-67 258.8 202 67.8
A10p07490 Brassica napus HOM05D004006 ORTHO05D004585 4.9e-66 255.0 201 68.2
BraSC36t46058Z Brassica rapa HOM05D004006 ORTHO05D004585 4.9e-66 255.0 201 68.2
Thhalv10011817m.g Eutrema salsugineum HOM05D004006 ORTHO05D004585 4.1e-65 251.9 175 73.7
AT1G44608 Arabidopsis thaliana HOM05D004006 ORTHO05D004585 5.4e-65 251.5 194 72.2
Sp1g33590 Schrenkiella parvula HOM05D004006 ORTHO05D004585 4.9e-58 228.4 203 62.6
THA.LOC104817318 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 7.3e-30 134.8 211 43.6
THA.LOC104806821 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 1.6e-29 133.7 206 43.7
Duzib093G0488 Durio zibethinus HOM05D004006 ORTHO05D004585 2.2e-26 123.2 209 40.2
COL.COLO4_35922 Corchorus olitorius HOM05D004006 ORTHO05D004585 4.9e-26 122.1 215 39.5
Aa31LG6G9320 Aethionema arabicum HOM05D004006 ORTHO05D004585 6.4e-26 121.7 188 43.1
Duzib116G0782 Durio zibethinus HOM05D004006 ORTHO05D004585 1.4e-25 120.6 215 38.6
Manes.02G162900 Manihot esculenta HOM05D004006 ORTHO05D004585 2.4e-25 119.8 207 39.6
Thecc.08G124900 Theobroma cacao HOM05D004006 ORTHO05D004585 2.4e-25 119.8 214 38.3
CSS0019596 Camellia sinensis var. sinensis HOM05D004006 ORTHO05D004585 3.5e-24 115.9 208 38.9
Gohir.D02G080400 Gossypium hirsutum HOM05D004006 ORTHO05D004585 6.0e-24 115.2 211 37.9
Eucgr.F04353 Eucalyptus grandis HOM05D004006 ORTHO05D004585 7.9e-24 114.8 230 36.1
Manes.18G077000 Manihot esculenta HOM05D004006 ORTHO05D004585 1.9e-22 110.2 205 38.5
TWI56G0850 Tripterygium wilfordii HOM05D004006 ORTHO05D004585 2.5e-22 109.8 219 40.2
TWI36G0058 Tripterygium wilfordii HOM05D004006 ORTHO05D004585 3.3e-22 109.4 231 39.4
Gohir.D01G180600 Gossypium hirsutum HOM05D004006 ORTHO05D004585 5.6e-22 108.6 212 38.2
Gorai.002G222000 Gossypium raimondii HOM05D004006 ORTHO05D004585 5.6e-22 108.6 212 38.2
Gorai.005G089800 Gossypium raimondii HOM05D004006 ORTHO05D004585 2.1e-21 106.7 215 35.8
TAR628G0258 Trochodendron aralioides HOM05D004006 ORTHO05D004585 2.1e-21 106.7 214 37.4
Potri.002G083900 Populus trichocarpa HOM05D004006 ORTHO05D004585 2.8e-21 106.3 219 36.1
CiPaw.06G030700 Carya illinoinensis HOM05D004006 ORTHO05D004585 4.8e-21 105.5 226 36.7
Gohir.A01G188900 Gossypium hirsutum HOM05D004006 ORTHO05D004585 4.8e-21 105.5 212 37.7
Lj1g0016270 Lotus japonicus HOM05D004006 ORTHO05D004585 4.8e-21 105.5 204 36.8
Gohir.A05G235000 Gossypium hirsutum HOM05D004006 ORTHO05D004585 6.2e-21 105.1 209 38.3
Gorai.009G245700 Gossypium raimondii HOM05D004006 ORTHO05D004585 6.2e-21 105.1 209 38.3
Atru.chr13.1448 Acer truncatum HOM05D004006 ORTHO05D004585 1.4e-20 104.0 207 36.7
Atru.chr13.1472 Acer truncatum HOM05D004006 ORTHO05D004585 1.4e-20 104.0 207 36.7
Dinv27317 Davidia involucrata HOM05D004006 ORTHO05D004585 1.4e-20 104.0 195 38.5
TAR376G1087 Trochodendron aralioides HOM05D004006 ORTHO05D004585 1.4e-20 104.0 201 39.3
CSS0040709 Camellia sinensis var. sinensis HOM05D004006 ORTHO05D004585 1.8e-20 103.6 198 36.9
vmacro00834 Vaccinium macrocarpon HOM05D004006 ORTHO05D004585 2.4e-20 103.2 198 38.9
Gohir.D05G237300 Gossypium hirsutum HOM05D004006 ORTHO05D004585 4.0e-20 102.4 209 37.8
Duzib041G0805 Durio zibethinus HOM05D004006 ORTHO05D004585 5.3e-20 102.1 177 39.0
PGR044G2543 Punica granatum HOM05D004006 ORTHO05D004585 1.5e-19 100.5 232 35.3
THA.LOC104800196 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 1.5e-19 100.5 209 38.8
THA.LOC104813655 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 1.5e-19 100.5 199 38.2
Oeu050916.1 Olea europaea HOM05D004006 ORTHO05D004585 2.0e-19 100.1 197 38.1
Glyma.06G113000 Glycine max HOM05D004006 ORTHO05D004585 2.6e-19 99.8 200 35.0
Hma1.2p1_0186F.1_g081800 Hydrangea macrophylla HOM05D004006 ORTHO05D004585 2.6e-19 99.8 200 37.5
Cc10_g11860 Coffea canephora HOM05D004006 ORTHO05D004585 4.5e-19 99.0 205 35.1
MD08G1163000 Malus domestica HOM05D004006 ORTHO05D004585 4.5e-19 99.0 204 34.8
Sed0014468 Sechium edule HOM05D004006 ORTHO05D004585 4.5e-19 99.0 193 36.8
Glyma.04G249900 Glycine max HOM05D004006 ORTHO05D004585 5.8e-19 98.6 201 36.3
Oeu050917.2 Olea europaea HOM05D004006 ORTHO05D004585 5.8e-19 98.6 197 37.6
FAN24G3177 Fragaria x ananassa HOM05D004006 ORTHO05D004585 7.6e-19 98.2 200 35.0
Prupe.1G498100 Prunus persica HOM05D004006 ORTHO05D004585 7.6e-19 98.2 202 34.7
Sp1g19380 Schrenkiella parvula HOM05D004006 ORTHO05D004585 7.6e-19 98.2 193 37.8
FvH4_2g26860 Fragaria vesca HOM05D004006 ORTHO05D004585 1.0e-18 97.8 200 35.0
FAN27G3464 Fragaria x ananassa HOM05D004006 ORTHO05D004585 1.0e-18 97.8 201 34.8
MD15G1349700 Malus domestica HOM05D004006 ORTHO05D004585 1.0e-18 97.8 206 34.5
Gohir.A02G073100 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.3e-18 97.4 211 34.1
RcHm_v2.0_Chr6g0295711 Rosa chinensis HOM05D004006 ORTHO05D004585 1.3e-18 97.4 200 35.5
Thhalv10008805m.g Eutrema salsugineum HOM05D004006 ORTHO05D004585 1.7e-18 97.1 195 39.5
Nn5g28281 Nelumbo nucifera HOM05D004006 ORTHO05D004585 1.7e-18 97.1 197 37.6
Ciclev10002301m.g Citrus clementina HOM05D004006 ORTHO05D004585 2.9e-18 96.3 228 34.2
BraA06t24881Z Brassica rapa HOM05D004006 ORTHO05D004585 3.8e-18 95.9 194 38.7
Potri.005G177600 Populus trichocarpa HOM05D004006 ORTHO05D004585 3.8e-18 95.9 207 37.2
A06p17910 Brassica napus HOM05D004006 ORTHO05D004585 4.9e-18 95.5 194 38.7
ClCG08G005630 Citrullus lanatus HOM05D004006 ORTHO05D004585 4.9e-18 95.5 193 37.3
Lalb_Chr23g0271011 Lupinus albus HOM05D004006 ORTHO05D004585 4.9e-18 95.5 197 33.5
Nn1g08787 Nelumbo nucifera HOM05D004006 ORTHO05D004585 4.9e-18 95.5 214 35.0
PGSC0003DMG400027788 Solanum tuberosum HOM05D004006 ORTHO05D004585 4.9e-18 95.5 224 33.9
Actinidia03470 Actinidia chinensis HOM05D004006 ORTHO05D004585 6.5e-18 95.1 178 37.6
BcaB07g32181 Brassica carinata HOM05D004006 ORTHO05D004585 6.5e-18 95.1 194 38.1
BcaC05g26103 Brassica carinata HOM05D004006 ORTHO05D004585 6.5e-18 95.1 194 38.1
C05p20810 Brassica napus HOM05D004006 ORTHO05D004585 6.5e-18 95.1 194 38.1
BolC5t30780H Brassica oleracea HOM05D004006 ORTHO05D004585 8.4e-18 94.7 194 38.1
RhsimUnG0092700 Rhododendron simsii HOM05D004006 ORTHO05D004585 1.1e-17 94.4 194 35.1
Actinidia21321 Actinidia chinensis HOM05D004006 ORTHO05D004585 1.4e-17 94.0 214 33.6
Cfa016015 Carpinus fangiana HOM05D004006 ORTHO05D004585 1.4e-17 94.0 212 35.8
FAN20G2831 Fragaria x ananassa HOM05D004006 ORTHO05D004585 1.4e-17 94.0 201 33.8
GSVIVG01008871001 Vitis vinifera HOM05D004006 ORTHO05D004585 1.4e-17 94.0 180 40.6
A08p28790 Brassica napus HOM05D004006 ORTHO05D004585 1.9e-17 93.6 193 37.8
BraA08t34808Z Brassica rapa HOM05D004006 ORTHO05D004585 1.9e-17 93.6 193 37.8
CsaV3_6G034510 Cucumis sativus L. HOM05D004006 ORTHO05D004585 3.2e-17 92.8 190 37.9
Ca_16556_v3 Cicer arietinum L. HOM05D004006 ORTHO05D004585 5.5e-17 92.0 216 33.8
Phvul.009G124900 Phaseolus vulgaris HOM05D004006 ORTHO05D004585 5.5e-17 92.0 213 34.7
TPR.G21067 Trifolium pratense HOM05D004006 ORTHO05D004585 5.5e-17 92.0 222 33.8
Peaxi162Scf00018g00027 Petunia axillaris HOM05D004006 ORTHO05D004585 7.1e-17 91.7 219 32.9
Medtr3g088010 Medicago truncatula HOM05D004006 ORTHO05D004585 1.2e-16 90.9 213 36.2
Hund17292 Selenicereus undatus HOM05D004006 ORTHO05D004585 1.2e-16 90.9 238 34.5
Migut.C01125 Erythranthe guttata HOM05D004006 ORTHO05D004585 2.1e-16 90.1 192 35.9
BcaB07g32179 Brassica carinata HOM05D004006 ORTHO05D004585 2.7e-16 89.7 194 36.1
SGA_v2.0_scaffold25G11123 Striga asiatica HOM05D004006 ORTHO05D004585 3.5e-16 89.4 175 36.6
BcaC07g39124 Brassica carinata HOM05D004006 ORTHO05D004585 4.6e-16 89.0 193 36.3
C08p21130 Brassica napus HOM05D004006 ORTHO05D004585 4.6e-16 89.0 193 36.3
BolC8t49750H Brassica oleracea HOM05D004006 ORTHO05D004585 4.6e-16 89.0 193 36.3
MELO3C010605.2 Cucumis melo HOM05D004006 ORTHO05D004585 4.6e-16 89.0 190 37.4
MSTRG.1442 Avicennia marina HOM05D004006 ORTHO05D004585 7.9e-16 88.2 197 34.0
Solyc11g013450.2 Solanum lycopersicum HOM05D004006 ORTHO05D004585 7.9e-16 88.2 224 32.1
BcaB03g11881 Brassica carinata HOM05D004006 ORTHO05D004585 1.3e-15 87.4 190 36.8
Actinidia29465 Actinidia chinensis HOM05D004006 ORTHO05D004585 1.8e-15 87.0 202 35.1
Oeu047951.1 Olea europaea HOM05D004006 ORTHO05D004585 2.3e-15 86.7 196 33.7
MSTRG.22410 Avicennia marina HOM05D004006 ORTHO05D004585 3.0e-15 86.3 205 33.2
Lalb_Chr08g0241451 Lupinus albus HOM05D004006 ORTHO05D004585 5.1e-15 85.5 202 31.7
AL1G35020 Arabidopsis lyrata HOM05D004006 ORTHO05D004585 8.7e-15 84.7 202 36.1
Carub.0001s2127 Capsella rubella HOM05D004006 ORTHO05D004585 8.7e-15 84.7 202 35.1
Glyma.13G079800 Glycine max HOM05D004006 ORTHO05D004585 8.7e-15 84.7 208 30.8
Nitab4.5_0016080g0010 Nicotiana tabacum HOM05D004006 ORTHO05D004585 8.7e-15 84.7 215 33.0
MBI09_g12159_MAGBIO Magnolia biondii HOM05D004006 ORTHO05D004585 1.1e-14 84.3 180 37.2
Oeu059434.1 Olea europaea HOM05D004006 ORTHO05D004585 1.1e-14 84.3 196 33.2
SalBow7G3581 Salvia bowleyana HOM05D004006 ORTHO05D004585 1.1e-14 84.3 186 32.8
Rhsim06G0103600 Rhododendron simsii HOM05D004006 ORTHO05D004585 1.5e-14 84.0 196 33.7
SGA_v2.0_scaffold52G18967 Striga asiatica HOM05D004006 ORTHO05D004585 1.9e-14 83.6 218 29.8
Haze_00445 Corylus avellana HOM05D004006 ORTHO05D004585 2.5e-14 83.2 224 33.5
Lj7P340T24 Lonicera japonica HOM05D004006 ORTHO05D004585 3.3e-14 82.8 198 33.3
Psat5g087920 Pisum sativum HOM05D004006 ORTHO05D004585 3.3e-14 82.8 201 33.3
AT1G21830 Arabidopsis thaliana HOM05D004006 ORTHO05D004585 5.7e-14 82.0 198 35.9
MSTRG.25384 Avicennia marina HOM05D004006 ORTHO05D004585 5.7e-14 82.0 199 35.2
CARHR022190 Cardamine hirsuta HOM05D004006 ORTHO05D004585 5.7e-14 82.0 180 37.2
Aqoxy6G00215 Aquilegia oxysepala HOM05D004006 ORTHO05D004585 7.4e-14 81.6 229 32.3
EL10Ac1g01007 Beta vulgaris HOM05D004006 ORTHO05D004585 1.6e-13 80.5 240 31.7
BcaC06g34904 Brassica carinata HOM05D004006 ORTHO05D004585 4.8e-13 79.0 197 35.0
C07p21950 Brassica napus HOM05D004006 ORTHO05D004585 4.8e-13 79.0 197 35.0
BolC7t42725H Brassica oleracea HOM05D004006 ORTHO05D004585 4.8e-13 79.0 197 35.0
VMungo1309G2318 Vigna mungo HOM05D004006 ORTHO05D004585 4.8e-13 79.0 201 33.8
Glyma.14G150000 Glycine max HOM05D004006 ORTHO05D004585 8.2e-13 78.2 172 32.0
arahy.Tifrunner.gnm1.ann1.J26PKP Arachis hypogaea HOM05D004006 ORTHO05D004585 1.1e-12 77.8 216 29.2
A07p14920 Brassica napus HOM05D004006 ORTHO05D004585 1.1e-12 77.8 197 34.5
BraA07t29235Z Brassica rapa HOM05D004006 ORTHO05D004585 1.1e-12 77.8 197 34.5
CDE02G3357 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 1.1e-12 77.8 207 32.4
Nitab4.5_0000051g0220 Nicotiana tabacum HOM05D004006 ORTHO05D004585 1.8e-12 77.0 215 31.6
Lsat_1_v5_gn_5_101481 Lactuca sativa HOM05D004006 ORTHO05D004585 2.4e-12 76.6 195 30.8
arahy.Tifrunner.gnm1.ann1.CFE04G Arachis hypogaea HOM05D004006 ORTHO05D004585 3.1e-12 76.3 216 29.2
BcaB03g14254 Brassica carinata HOM05D004006 ORTHO05D004585 3.1e-12 76.3 196 33.7
Gorai.009G283200 Gossypium raimondii HOM05D004006 ORTHO05D004585 3.1e-12 76.3 169 35.5
Gohir.D05G270600 Gossypium hirsutum HOM05D004006 ORTHO05D004585 5.3e-12 75.5 162 34.0
MBI16_g07656_MAGBIO Magnolia biondii HOM05D004006 ORTHO05D004585 6.9e-12 75.1 184 34.2
SalBow6G7056 Salvia bowleyana HOM05D004006 ORTHO05D004585 6.9e-12 75.1 166 33.7
ATR0584G004 Amborella trichopoda HOM05D004006 ORTHO05D004585 9.0e-12 74.7 196 33.7
SGA_v2.0_scaffold24G10460 Striga asiatica HOM05D004006 ORTHO05D004585 1.2e-11 74.3 173 34.7
CDE06G0283 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 1.5e-11 73.9 171 33.3
Lalb_Chr10g0101721 Lupinus albus HOM05D004006 ORTHO05D004585 1.5e-11 73.9 204 30.4
Cpa.g.sc64.85 Carica papaya HOM05D004006 ORTHO05D004585 2.0e-11 73.6 128 40.6
CDE08G0380 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 2.0e-11 73.6 173 34.1
CDE08G1629 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 5.8e-11 72.0 171 33.3
HanXRQChr04g0125261 Helianthus annuus HOM05D004006 ORTHO05D004585 7.6e-11 71.6 215 30.2
Hund26811 Selenicereus undatus HOM05D004006 ORTHO05D004585 1.0e-10 71.2 193 31.6
DCAR_014087 Daucus carota HOM05D004006 ORTHO05D004585 2.2e-10 70.1 192 33.3
Migut.N03284 Erythranthe guttata HOM05D004006 ORTHO05D004585 3.8e-10 69.3 173 31.8
CANSAT25G0779 Cannabis sativa HOM05D004006 ORTHO05D004585 1.4e-09 67.4 233 28.3
PSO170G2295 Papaver somniferum HOM05D004006 ORTHO05D004585 3.2e-09 66.2 215 27.4
PSO528G0204 Papaver somniferum HOM05D004006 ORTHO05D004585 3.2e-09 66.2 218 26.1
Oeu026152.1 Olea europaea HOM05D004006 ORTHO05D004585 4.2e-09 65.9 189 30.2
Dinv07222 Davidia involucrata HOM05D004006 ORTHO05D004585 5.5e-09 65.5 141 36.2
Sopen11g008440 Solanum pennellii HOM05D004006 ORTHO05D004585 3.5e-08 62.8 150 35.3
Os04g0690500 Oryza sativa ssp. japonica HOM05D004006 ORTHO05D004585 1.0e-07 61.2 176 31.2
HPP92_011945 Vanilla planifolia HOM05D004006 ORTHO05D004585 1.3e-07 60.8 175 28.6
Gohir.A05G268750 Gossypium hirsutum HOM05D004006 ORTHO05D004585 2.3e-07 60.1 133 38.3
Sabra02G0065700 Salix brachista HOM05D004006 ORTHO05D004585 1.9e-06 57.0 92 38.0
Phvul.008G163001 Phaseolus vulgaris HOM05D004006 ORTHO05D004585 3.3e-06 56.2 89 37.1


User provided reference genes

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