Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR035860 Cardamine hirsuta HOM05D002956 ORTHO05D009000 2.7e-61 238.4 115 100.0
AL5G21910 Arabidopsis lyrata HOM05D002956 ORTHO05D009000 1.0e-20 103.6 90 57.8
Aa31LG5G8950 Aethionema arabicum HOM05D002956 ORTHO05D009000 5.1e-20 101.3 90 60.0
AT3G43910 Arabidopsis thaliana HOM05D002956 ORTHO05D009000 1.3e-18 96.7 90 55.6
BcaB01g03033 Brassica carinata HOM05D002956 ORTHO05D008031 2.4e-17 92.4 91 52.7
Sabra09G0051400 Salix brachista HOM05D002956 ORTHO05D009000 1.5e-16 89.7 98 49.0
CARHR119020 Cardamine hirsuta HOM05D002956 ORTHO05D009000 2.6e-16 89.0 93 54.8
A03p26830 Brassica napus HOM05D002956 ORTHO05D008031 4.5e-16 88.2 91 51.6
BraA03t11895Z Brassica rapa HOM05D002956 ORTHO05D008031 4.5e-16 88.2 91 51.6
AL4G20050 Arabidopsis lyrata HOM05D002956 ORTHO05D009000 5.9e-16 87.8 91 56.0
Carub.0004s0731 Capsella rubella HOM05D002956 ORTHO05D009000 7.7e-16 87.4 91 56.0
Potri.009G068300 Populus trichocarpa HOM05D002956 ORTHO05D009000 7.7e-16 87.4 98 45.9
Sp4g08630 Schrenkiella parvula HOM05D002956 ORTHO05D009000 2.9e-15 85.5 92 51.1
Thecc.09G246200 Theobroma cacao HOM05D002956 ORTHO05D009000 1.4e-14 83.2 91 48.4
Thhalv10002070m.g Eutrema salsugineum HOM05D002956 ORTHO05D009000 2.5e-14 82.4 91 48.4
Duzib168G2273 Durio zibethinus HOM05D002956 ORTHO05D009000 3.2e-14 82.0 91 49.5
Manes.02G137000 Manihot esculenta HOM05D002956 ORTHO05D009000 4.2e-14 81.6 99 43.4
CiPaw.13G148600 Carya illinoinensis HOM05D002956 ORTHO05D009000 7.2e-14 80.9 96 46.9
AUR62000215 Chenopodium quinoa HOM05D002956 ORTHO05D009000 7.2e-14 80.9 78 51.3
AUR62006560 Chenopodium quinoa HOM05D002956 ORTHO05D009000 7.2e-14 80.9 78 51.3
Cfa009899 Carpinus fangiana HOM05D002956 ORTHO05D009000 9.4e-14 80.5 93 47.3
CiPaw.14G111100 Carya illinoinensis HOM05D002956 ORTHO05D009000 1.2e-13 80.1 93 47.3
BcaC01g04913 Brassica carinata HOM05D002956 ORTHO05D008031 2.1e-13 79.3 91 47.3
BolC3t15559H Brassica oleracea HOM05D002956 ORTHO05D008031 2.1e-13 79.3 91 47.3
MBI19_g19212_MAGBIO Magnolia biondii HOM05D002956 ORTHO05D009000 2.1e-13 79.3 98 45.9
Haze_23260 Corylus avellana HOM05D002956 ORTHO05D009000 2.7e-13 79.0 91 48.4
COL.COLO4_07383 Corchorus olitorius HOM05D002956 ORTHO05D009000 3.6e-13 78.6 89 46.1
Sc16g0010930 Simmondsia chinensis HOM05D002956 ORTHO05D009000 4.6e-13 78.2 94 47.9
Ah.06g194750 Amaranthus hybridus HOM05D002956 ORTHO05D009000 6.1e-13 77.8 92 42.4
Aqoxy2G00440 Aquilegia oxysepala HOM05D002956 ORTHO05D009000 6.1e-13 77.8 95 45.3
C03p32170 Brassica napus HOM05D002956 ORTHO05D008031 6.1e-13 77.8 91 46.2
EL10Ac4g10093 Beta vulgaris HOM05D002956 ORTHO05D009000 1.0e-12 77.0 90 43.3
Ciclev10016188m.g Citrus clementina HOM05D002956 ORTHO05D009000 1.0e-12 77.0 93 52.7
Eucgr.B03751 Eucalyptus grandis HOM05D002956 ORTHO05D009000 1.0e-12 77.0 69 53.6
TAR633G2508 Trochodendron aralioides HOM05D002956 ORTHO05D009000 1.0e-12 77.0 97 49.5
CSS0047298 Camellia sinensis var. sinensis HOM05D002956 ORTHO05D009000 1.8e-12 76.3 70 52.9
ECA233G2896 Erigeron canadensis HOM05D000003 ORTHO05D009000 2.3e-12 75.9 83 45.8
THA.LOC104826457 Tarenaya hassleriana HOM05D002956 ORTHO05D009000 2.3e-12 75.9 98 44.9
Prupe.4G260500 Prunus persica HOM05D002956 ORTHO05D009000 3.9e-12 75.1 104 41.3
DCAR_006895 Daucus carota HOM05D002956 ORTHO05D009000 5.1e-12 74.7 95 42.1
SalBow6G2483 Salvia bowleyana HOM05D002956 ORTHO05D009000 6.7e-12 74.3 85 43.5
MD00G1148000 Malus domestica HOM05D002956 ORTHO05D009000 1.1e-11 73.6 83 43.4
Duzib150G0064 Durio zibethinus HOM05D002956 ORTHO05D009000 2.0e-11 72.8 91 45.1
Gohir.A05G073600 Gossypium hirsutum HOM05D002956 ORTHO05D009000 2.5e-11 72.4 86 46.5
Dinv04582 Davidia involucrata HOM05D000102 ORTHO05D000138 5.7e-11 71.2 98 43.9
Lj6g0021242 Lotus japonicus HOM05D002956 ORTHO05D009000 5.7e-11 71.2 92 42.4
PSO339G4249 Papaver somniferum HOM05D002956 ORTHO05D009000 5.7e-11 71.2 90 43.3
PSO384G3893 Papaver somniferum HOM05D002956 ORTHO05D009000 7.4e-11 70.9 90 42.2
Atru.chr3.2859 Acer truncatum HOM05D002956 ORTHO05D009000 9.7e-11 70.5 90 44.4
FvH4_2g35650 Fragaria vesca HOM05D002956 ORTHO05D009000 1.3e-10 70.1 93 45.2
FAN20G2737 Fragaria x ananassa HOM05D002956 ORTHO05D009000 1.3e-10 70.1 93 45.2
FAN27G0310 Fragaria x ananassa HOM05D002956 ORTHO05D009000 1.3e-10 70.1 95 46.3
Phvul.005G020500 Phaseolus vulgaris HOM05D002956 ORTHO05D009000 1.3e-10 70.1 98 41.8
Gohir.D05G076500 Gossypium hirsutum HOM05D002956 ORTHO05D009000 1.7e-10 69.7 86 44.2
Gorai.009G077800 Gossypium raimondii HOM05D002956 ORTHO05D009000 1.7e-10 69.7 86 44.2
Lsat_1_v5_gn_5_63121 Lactuca sativa HOM05D002956 ORTHO05D009000 1.7e-10 69.7 78 42.3
MD00G1134800 Malus domestica HOM05D002956 ORTHO05D009000 1.7e-10 69.7 81 43.2
Nn7g36832 Nelumbo nucifera HOM05D002956 ORTHO05D009000 1.7e-10 69.7 76 48.7
Rhsim13G0206200 Rhododendron simsii HOM05D002956 ORTHO05D009000 1.7e-10 69.7 100 40.0
Migut.D00676 Erythranthe guttata HOM05D002956 ORTHO05D009000 2.2e-10 69.3 90 43.3
Thhalv10002099m.g Eutrema salsugineum HOM05D002956 ORTHO05D009000 2.2e-10 69.3 69 50.7
TPR.G11887 Trifolium pratense HOM05D002956 ORTHO05D009000 2.8e-10 68.9 93 40.9
GSVIVG01037339001 Vitis vinifera HOM05D002956 ORTHO05D009000 2.8e-10 68.9 75 45.3
CDE08G0764 Ceratophyllum demersum HOM05D002956 ORTHO05D009000 3.7e-10 68.6 85 47.1
Actinidia06979 Actinidia chinensis HOM05D002956 ORTHO05D009000 4.8e-10 68.2 100 42.0
CANSAT54G2237 Cannabis sativa HOM05D002956 ORTHO05D009000 4.8e-10 68.2 85 43.5
FAN22G1360 Fragaria x ananassa HOM05D002956 ORTHO05D009000 4.8e-10 68.2 95 45.3
RcHm_v2.0_Chr5g0050271 Rosa chinensis HOM05D002956 ORTHO05D009000 4.8e-10 68.2 79 46.8
FAN15G3287 Fragaria x ananassa HOM05D002956 ORTHO05D009000 6.3e-10 67.8 93 44.1
PGR102G2739 Punica granatum HOM05D002956 ORTHO05D009000 6.3e-10 67.8 91 41.8
SGA_v2.0_scaffold29G12222 Striga asiatica HOM05D002956 ORTHO05D009000 6.3e-10 67.8 89 43.8
Hma1.2p1_0460F.1_g157580 Hydrangea macrophylla HOM05D002956 ORTHO05D009000 8.2e-10 67.4 66 51.5
Lalb_Chr15g0078501 Lupinus albus HOM05D002956 ORTHO05D009000 1.1e-09 67.0 68 48.5
AT2G26840 Arabidopsis thaliana HOM05D002956 ORTHO05D009000 1.4e-09 66.6 144 36.1
VMungo1080G0193 Vigna mungo HOM05D002956 ORTHO05D009000 1.4e-09 66.6 98 39.8
Medtr3g437110 Medicago truncatula HOM05D002956 ORTHO05D009000 1.8e-09 66.2 100 39.0
arahy.Tifrunner.gnm1.ann1.UED96S Arachis hypogaea HOM05D002956 ORTHO05D009000 2.4e-09 65.9 93 40.9
Cpa.g.sc34.182 Carica papaya HOM05D002956 ORTHO05D009000 2.4e-09 65.9 95 36.8
Cc01_g06260 Coffea canephora HOM05D002956 ORTHO05D009000 2.4e-09 65.9 85 41.2
unitig_8.g3652 Utricularia gibba HOM05D002956 ORTHO05D009000 2.4e-09 65.9 90 42.2
HPP92_025063 Vanilla planifolia HOM05D002956 ORTHO05D009000 3.1e-09 65.5 99 39.4
Migut.N02380 Erythranthe guttata HOM05D002956 ORTHO05D009000 4.1e-09 65.1 85 41.2
Glyma.08G154600 Glycine max HOM05D002956 ORTHO05D009000 5.3e-09 64.7 100 38.0
ATR0307G004 Amborella trichopoda HOM05D002956 ORTHO05D009000 6.9e-09 64.3 66 50.0
arahy.Tifrunner.gnm1.ann1.NKUQ81 Arachis hypogaea HOM05D002956 ORTHO05D009000 6.9e-09 64.3 93 39.8
MSTRG.17638 Avicennia marina HOM05D002956 ORTHO05D009000 9.1e-09 63.9 69 42.0
QL01p016676 Quercus lobata HOM05D002956 ORTHO05D009000 1.2e-08 63.5 93 40.9
TWI31G1447 Tripterygium wilfordii HOM05D002956 ORTHO05D009000 1.5e-08 63.2 65 41.5
Ca_26337_v3 Cicer arietinum L. HOM05D002956 ORTHO05D009000 2.6e-08 62.4 66 42.4
HanXRQChr12g0380431 Helianthus annuus HOM05D002956 ORTHO05D009000 2.6e-08 62.4 65 46.2
Psat5g240480 Pisum sativum HOM05D002956 ORTHO05D009000 2.6e-08 62.4 99 34.3
Oeu027216.2 Olea europaea HOM05D002956 ORTHO05D009000 4.5e-08 61.6 93 41.9
Peaxi162Scf00032g02025 Petunia axillaris HOM05D002956 ORTHO05D009000 1.0e-07 60.5 65 44.6
Glyma.15G273500 Glycine max HOM05D002956 ORTHO05D009000 1.3e-07 60.1 98 38.8
CsaV3_6G038840 Cucumis sativus L. HOM05D002956 ORTHO05D009000 3.8e-07 58.5 68 41.2
Solyc01g008700.4 Solanum lycopersicum HOM05D002956 ORTHO05D009000 1.1e-06 57.0 65 41.5
PGSC0003DMG400004431 Solanum tuberosum HOM05D002956 ORTHO05D009000 1.1e-06 57.0 67 40.3
Sopen01g004220 Solanum pennellii HOM05D002956 ORTHO05D009000 1.9e-06 56.2 65 41.5
Nitab4.5_0006687g0010 Nicotiana tabacum HOM05D002956 ORTHO05D000001 4.2e-06 55.1 65 40.0
Sed0027603 Sechium edule HOM05D002956 ORTHO05D009000 9.4e-06 53.9 103 33.0


User provided reference genes

Program Settings