Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR035710 Cardamine hirsuta HOM05D008458 ORTHO05D010628 1.4e-95 352.8 166 100.0
CARHR184520 Cardamine hirsuta HOM05D008458 ORTHO05D010628 2.1e-59 232.6 175 65.1
CARHR115630 Cardamine hirsuta HOM05D008458 ORTHO05D010628 4.0e-58 228.4 167 68.3
CARHR053560 Cardamine hirsuta HOM05D008458 ORTHO05D010628 2.4e-39 166.0 151 56.3
CARHR118560 Cardamine hirsuta HOM05D008458 ORTHO05D010628 1.6e-35 153.3 108 67.6
CARHR105800 Cardamine hirsuta HOM05D008458 ORTHO05D010628 1.2e-33 147.1 108 63.0
AL4G24140 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 9.6e-28 127.5 172 36.0
AL8G11870 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 9.6e-28 127.5 175 36.6
AL3G38160 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 1.6e-27 126.7 175 36.6
AL5G23160 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 2.8e-27 125.9 172 36.0
AL6G47370 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 2.8e-27 125.9 175 36.0
AL9U10230 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 3.7e-27 125.6 172 36.0
AL1G47450 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 4.8e-27 125.2 174 36.2
AL4G17450 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 4.8e-27 125.2 166 40.4
AL2G18400 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 6.2e-27 124.8 175 36.0
AL1G57330 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 8.2e-27 124.4 175 36.0
AL2G23360 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 1.8e-26 123.2 172 35.5
AL5G12240 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 3.1e-26 122.5 172 34.9
AL6G42690 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 3.1e-26 122.5 172 35.5
AL8G45410 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 3.1e-26 122.5 172 35.5
AL3G37710 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 4.0e-26 122.1 172 34.9
AL4G14310 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 4.0e-26 122.1 173 35.8
CARHR181090 Cardamine hirsuta HOM05D008458 ORTHO05D010628 4.0e-26 122.1 88 63.6
AL1G61970 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 6.9e-26 121.3 174 35.1
AL1G65160 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 9.0e-26 120.9 174 35.6
AL6G45550 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 7.6e-25 117.9 172 33.7
AL8G20450 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 1.3e-24 117.1 174 33.9
AL8G33480 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 2.9e-24 115.9 149 36.9
AT5G32590 Arabidopsis thaliana HOM05D008458 ORTHO05D010628 6.5e-24 114.8 178 36.0
Carub.0008s0728 Capsella rubella HOM05D009492 ORTHO05D011693 4.3e-20 102.1 177 33.9
Carub.0007s3731 Capsella rubella HOM05D009492 ORTHO05D011693 3.7e-19 99.0 167 34.1
Carub.0007s3611 Capsella rubella HOM05D009492 ORTHO05D011693 4.1e-18 95.5 167 34.1
CARHR174650 Cardamine hirsuta HOM05D008458 ORTHO05D010628 9.0e-18 94.4 99 49.5
Carub.0005s0956 Capsella rubella HOM05D009492 ORTHO05D011693 4.5e-17 92.0 167 33.5
Carub.0002s0942 Capsella rubella HOM05D009492 ORTHO05D011693 2.9e-16 89.4 157 35.0
CARHR104300 Cardamine hirsuta HOM05D008458 ORTHO05D010628 2.9e-16 89.4 151 39.7
CARHR153510 Cardamine hirsuta HOM05D008458 ORTHO05D010628 2.5e-15 86.3 66 62.1
Carub.0003s2742 Capsella rubella HOM05D009492 ORTHO05D011693 5.5e-15 85.1 167 29.9
AT2G11010 Arabidopsis thaliana HOM05D008458 ORTHO05D010628 2.1e-14 83.2 165 28.5
AT3G43148 Arabidopsis thaliana HOM05D008458 ORTHO05D010628 6.1e-14 81.6 84 45.2
CARHR181790 Cardamine hirsuta HOM05D008458 ORTHO05D010628 1.8e-13 80.1 63 61.9
AL1G50390 Arabidopsis lyrata HOM05D009492 ORTHO05D011693 3.0e-13 79.3 158 29.1
AT1G36100 Arabidopsis thaliana HOM05D008458 ORTHO05D010628 3.0e-13 79.3 116 37.9
Carub.0002s1048 Capsella rubella HOM05D009492 ORTHO05D011693 5.1e-13 78.6 167 31.7
Carub.0006s2644 Capsella rubella HOM05D009492 ORTHO05D011693 6.7e-13 78.2 165 29.7
Carub.0004s0672 Capsella rubella HOM05D009492 ORTHO05D011693 1.1e-12 77.4 160 28.8
AL5G19630 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 1.5e-12 77.0 175 29.7
Carub.0002s0975 Capsella rubella HOM05D009492 ORTHO05D011693 1.5e-12 77.0 151 29.1
AT3G30230 Arabidopsis thaliana HOM05D008458 ORTHO05D010628 2.0e-12 76.6 113 39.8
AT4G03830 Arabidopsis thaliana HOM05D009492 ORTHO05D011693 2.5e-12 76.3 155 26.5
Carub.0003s2904 Capsella rubella HOM05D006121 ORTHO05D009559 2.5e-12 76.3 130 32.3
AL2G23320 Arabidopsis lyrata HOM05D009492 ORTHO05D011693 3.3e-12 75.9 163 27.0
AT1G51172 Arabidopsis thaliana HOM05D009492 ORTHO05D011693 4.3e-12 75.5 140 25.0
AL8G10170 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 5.7e-12 75.1 163 28.2
Carub.0004s1788 Capsella rubella HOM05D009492 ORTHO05D011693 5.7e-12 75.1 160 29.4
BcaC03g16227 Brassica carinata HOM05D006121 ORTHO05D009559 7.4e-12 74.7 168 31.0
BcaC03g15130 Brassica carinata HOM05D006121 ORTHO05D009559 1.3e-11 73.9 164 32.9
BcaC01g05819 Brassica carinata HOM05D006121 ORTHO05D009559 2.8e-11 72.8 154 31.8
CARHR150680 Cardamine hirsuta HOM05D008458 ORTHO05D010628 3.7e-11 72.4 63 52.4
BcaC04g23210 Brassica carinata HOM05D006121 ORTHO05D009559 8.2e-11 71.2 162 30.9
Sp4g11160 Schrenkiella parvula HOM05D010772 ORTHO05D005680 1.1e-10 70.9 140 30.7
Carub.0001s3424 Capsella rubella HOM05D009492 ORTHO05D011693 1.4e-10 70.5 160 26.2
Carub.0007s3212 Capsella rubella HOM05D009492 ORTHO05D011693 2.4e-10 69.7 145 26.9
BcaC09g49745 Brassica carinata HOM05D006121 ORTHO05D009559 3.1e-10 69.3 147 29.9
AT2G15420 Arabidopsis thaliana HOM05D010629 ORTHO05D005680 1.2e-09 67.4 160 27.5
BolC8t48644H Brassica oleracea HOM05D002078 ORTHO05D005680 1.2e-09 67.4 152 28.9
BcaC03g16521 Brassica carinata HOM05D006121 ORTHO05D009559 3.4e-09 65.9 134 33.6
BcaC07g37897 Brassica carinata HOM05D006121 ORTHO05D009559 3.4e-09 65.9 162 30.2
BcaC08g42951 Brassica carinata HOM05D006121 ORTHO05D009559 5.9e-09 65.1 157 29.3
BcaC09g49729 Brassica carinata HOM05D006121 ORTHO05D009559 5.9e-09 65.1 158 30.4
AT4G06688 Arabidopsis thaliana HOM05D008458 ORTHO05D010628 7.7e-09 64.7 70 40.0
AT1G46696 Arabidopsis thaliana HOM05D009492 ORTHO05D011693 1.3e-08 63.9 148 27.0
BcaC01g02132 Brassica carinata HOM05D006121 ORTHO05D009559 2.9e-08 62.8 157 28.7
Sp4g04860 Schrenkiella parvula HOM05D010772 ORTHO05D005680 5.0e-08 62.0 140 27.9
BcaC04g20762 Brassica carinata HOM05D006121 ORTHO05D009559 6.5e-08 61.6 161 29.8
CARHR182970 Cardamine hirsuta HOM05D009492 ORTHO05D011693 6.5e-08 61.6 75 37.3
BcaC05g27793 Brassica carinata HOM05D006121 ORTHO05D009559 8.5e-08 61.2 156 28.8
Carub.0002s0916 Capsella rubella HOM05D009492 ORTHO05D011693 1.1e-07 60.8 120 30.0
AL3G49830 Arabidopsis lyrata HOM05D011598 ORTHO05D013181 1.9e-07 60.1 153 28.1
CARHR218210 Cardamine hirsuta HOM05D008458 ORTHO05D010628 2.5e-07 59.7 65 47.7
BcaC06g36507 Brassica carinata HOM05D006121 ORTHO05D009559 5.5e-07 58.5 165 28.5
AT1G20400 Arabidopsis thaliana HOM05D011598 ORTHO05D013181 7.2e-07 58.2 163 25.8
BcaC05g27675 Brassica carinata HOM05D006121 ORTHO05D009559 9.4e-07 57.8 157 28.7
AL9U10150 Arabidopsis lyrata HOM05D011598 ORTHO05D013181 1.6e-06 57.0 135 28.9
AL3G15920 Arabidopsis lyrata HOM05D011598 ORTHO05D013181 2.1e-06 56.6 165 27.3
AL1G53160 Arabidopsis lyrata HOM05D011598 ORTHO05D013181 2.7e-06 56.2 165 27.3
BraA06t25464Z Brassica rapa HOM05D008596 ORTHO05D003268 2.7e-06 56.2 144 24.3
BolC3t20163H Brassica oleracea HOM05D006121 ORTHO05D009559 3.6e-06 55.8 98 36.7
BcaC04g20964 Brassica carinata HOM05D003421 ORTHO05D003268 6.1e-06 55.1 144 24.3


User provided reference genes

Program Settings