Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR035480 Cardamine hirsuta HOM05D003899 ORTHO05D003655 2.9e-55 218.4 114 100.0
AT1G43790 Arabidopsis thaliana HOM05D003899 ORTHO05D003655 2.0e-45 185.7 117 85.5
AL1G51910 Arabidopsis lyrata HOM05D003899 ORTHO05D003655 3.9e-44 181.4 118 84.7
Carub.0001s3477 Capsella rubella HOM05D003899 ORTHO05D003655 1.4e-38 162.9 118 77.1
Thhalv10012331m.g Eutrema salsugineum HOM05D003899 ORTHO05D003655 3.5e-37 158.3 118 73.7
BcaB07g33974 Brassica carinata HOM05D003899 ORTHO05D003655 6.2e-34 147.5 111 71.2
A10p07750 Brassica napus HOM05D003899 ORTHO05D003655 1.4e-33 146.4 111 72.1
BraSC36t46027Z Brassica rapa HOM05D003899 ORTHO05D003655 1.4e-33 146.4 111 72.1
BolC6t35162H Brassica oleracea HOM05D003899 ORTHO05D003655 1.8e-33 146.0 101 75.2
C06p00330 Brassica napus HOM05D003899 ORTHO05D003655 2.1e-29 132.5 101 69.3
Sp1g32910 Schrenkiella parvula HOM05D003899 ORTHO05D003655 6.0e-29 131.0 111 67.6
THA.LOC104806849 Tarenaya hassleriana HOM05D003899 ORTHO05D003655 6.2e-26 120.9 98 63.3
BcaC08g42822 Brassica carinata HOM05D003899 ORTHO05D003655 3.5e-21 105.1 75 70.7
MD05G1014900 Malus domestica HOM05D003899 ORTHO05D003655 9.6e-19 97.1 89 52.8
Cfa018365 Carpinus fangiana HOM05D003899 ORTHO05D003655 1.3e-18 96.7 87 52.9
Prupe.8G018800 Prunus persica HOM05D003899 ORTHO05D003655 8.1e-18 94.0 98 48.0
TWI32G0122 Tripterygium wilfordii HOM05D003899 ORTHO05D003655 1.8e-17 92.8 87 51.7
Atru.chr4.839 Acer truncatum HOM05D003899 ORTHO05D003655 5.3e-17 91.3 99 47.5
FvH4_2g14670 Fragaria vesca HOM05D003899 ORTHO05D003655 6.9e-17 90.9 83 54.2
FAN24G0119 Fragaria x ananassa HOM05D003899 ORTHO05D003655 6.9e-17 90.9 83 54.2
Haze_17704 Corylus avellana HOM05D003899 ORTHO05D003655 9.0e-17 90.5 87 49.4
Actinidia06640 Actinidia chinensis HOM05D003899 ORTHO05D003655 1.2e-16 90.1 91 51.6
CANSAT25G0207 Cannabis sativa HOM05D003899 ORTHO05D003655 1.5e-16 89.7 94 50.0
FAN20G0153 Fragaria x ananassa HOM05D003899 ORTHO05D003655 2.0e-16 89.4 80 56.2
MSTRG.1375 Avicennia marina HOM05D003899 ORTHO05D003655 2.6e-16 89.0 91 44.0
FAN15G3500 Fragaria x ananassa HOM05D003899 ORTHO05D003655 3.4e-16 88.6 83 53.0
Manes.12G153900 Manihot esculenta HOM05D003899 ORTHO05D003655 4.5e-16 88.2 89 49.4
Migut.N03236 Erythranthe guttata HOM05D003899 ORTHO05D003655 7.6e-16 87.4 105 44.8
CiPaw.16G017800 Carya illinoinensis HOM05D003899 ORTHO05D003655 1.7e-15 86.3 91 45.1
Gohir.A11G224804 Gossypium hirsutum HOM05D003899 ORTHO05D003655 2.2e-15 85.9 83 49.4
Dinv24330 Davidia involucrata HOM05D003899 ORTHO05D003655 3.8e-15 85.1 85 49.4
Thecc.01G128000 Theobroma cacao HOM05D003899 ORTHO05D003655 4.9e-15 84.7 89 48.3
Ciclev10003780m.g Citrus clementina HOM05D003899 ORTHO05D003655 6.4e-15 84.3 85 49.4
Gohir.A02G066500 Gossypium hirsutum HOM05D003899 ORTHO05D003655 1.4e-14 83.2 88 52.3
Rhsim10G0136200 Rhododendron simsii HOM05D003899 ORTHO05D003655 1.4e-14 83.2 75 49.3
RhsimUnG0132700 Rhododendron simsii HOM05D003899 ORTHO05D003655 1.4e-14 83.2 75 49.3
RcHm_v2.0_Chr6g0277141 Rosa chinensis HOM05D003899 ORTHO05D003655 1.4e-14 83.2 88 48.9
Nn5g28623 Nelumbo nucifera HOM05D003899 ORTHO05D003655 3.2e-14 82.0 89 47.2
AUR62013490 Chenopodium quinoa HOM05D003899 ORTHO05D003655 4.2e-14 81.6 128 40.6
DCAR_007049 Daucus carota HOM05D003899 ORTHO05D003655 7.1e-14 80.9 84 53.6
QL06p029227 Quercus lobata HOM05D003899 ORTHO05D003655 7.1e-14 80.9 78 48.7
AUR62026786 Chenopodium quinoa HOM05D003899 ORTHO05D003655 1.2e-13 80.1 128 39.1
Potri.005G060700 Populus trichocarpa HOM05D003899 ORTHO05D003655 4.6e-13 78.2 89 43.8
CAN.G375.87 Capsicum annuum HOM05D003899 ORTHO05D003655 6.0e-13 77.8 100 40.0
PGR044G0858 Punica granatum HOM05D003899 ORTHO05D003655 6.0e-13 77.8 74 45.9
Aqoxy5G02188 Aquilegia oxysepala HOM05D003899 ORTHO05D003655 7.9e-13 77.4 101 43.6
Duzib264G1053 Durio zibethinus HOM05D003899 ORTHO05D003655 1.3e-12 76.6 87 46.0
Gorai.005G081600 Gossypium raimondii HOM05D003899 ORTHO05D003655 1.3e-12 76.6 87 50.6
PSO017G4320 Papaver somniferum HOM05D003899 ORTHO05D003655 1.3e-12 76.6 88 44.3
Potri.007G108100 Populus trichocarpa HOM05D003899 ORTHO05D003655 3.0e-12 75.5 87 44.8
HanXRQChr05g0161081 Helianthus annuus HOM05D003899 ORTHO05D003655 6.7e-12 74.3 96 42.7
Lsat_1_v5_gn_9_107661 Lactuca sativa HOM05D003899 ORTHO05D003655 6.7e-12 74.3 89 43.8
MBI06_g43012_MAGBIO Magnolia biondii HOM05D003899 ORTHO05D003655 8.7e-12 73.9 82 50.0
Gohir.D11G228940 Gossypium hirsutum HOM05D003899 ORTHO05D003655 1.1e-11 73.6 76 46.1
Gorai.003G068900 Gossypium raimondii HOM05D003899 ORTHO05D003655 1.1e-11 73.6 76 46.1
Lsat_1_v5_gn_5_108760 Lactuca sativa HOM05D003899 ORTHO05D003655 1.1e-11 73.6 88 42.0
arahy.Tifrunner.gnm1.ann1.UE47UQ Arachis hypogaea HOM05D003899 ORTHO05D003655 2.5e-11 72.4 84 46.4
HanXRQChr08g0232541 Helianthus annuus HOM05D003899 ORTHO05D003655 2.5e-11 72.4 91 40.7
AUR62017911 Chenopodium quinoa HOM05D003899 ORTHO05D003655 3.3e-11 72.0 97 41.2
PSO170G2020 Papaver somniferum HOM05D003899 ORTHO05D003655 3.3e-11 72.0 90 42.2
ClCG08G006450 Citrullus lanatus HOM05D000058 ORTHO05D000077 4.3e-11 71.6 72 51.4
Glyma.14G121800 Glycine max HOM05D003899 ORTHO05D003655 5.6e-11 71.2 83 45.8
MELO3C023688.2 Cucumis melo HOM05D003899 ORTHO05D003655 7.4e-11 70.9 84 44.0
CsaV3_6G030980 Cucumis sativus L. HOM05D003899 ORTHO05D003655 7.4e-11 70.9 74 48.6
Lsat_1_v5_gn_5_108780 Lactuca sativa HOM05D003899 ORTHO05D003655 9.6e-11 70.5 89 42.7
QL02p025320 Quercus lobata HOM05D003899 ORTHO05D003655 9.6e-11 70.5 73 45.2
MELO3C027328.2 Cucumis melo HOM05D003899 ORTHO05D003655 1.3e-10 70.1 73 49.3
Psat6g039960 Pisum sativum HOM05D003899 ORTHO05D003655 1.3e-10 70.1 80 45.0
Sed0026893 Sechium edule HOM05D003899 ORTHO05D003655 1.3e-10 70.1 91 45.1
Thecc.08G144600 Theobroma cacao HOM05D003899 ORTHO05D003655 1.3e-10 70.1 79 45.6
Lj1g0026176 Lotus japonicus HOM05D003899 ORTHO05D003655 1.6e-10 69.7 90 40.0
Duzib041G0166 Durio zibethinus HOM05D003899 ORTHO05D003655 2.1e-10 69.3 78 48.7
HanXRQChr04g0125201 Helianthus annuus HOM05D003899 ORTHO05D003655 2.1e-10 69.3 88 45.5
ECA246G5022 Erigeron canadensis HOM05D003899 ORTHO05D003655 2.8e-10 68.9 88 40.9
Oeu030532.1 Olea europaea HOM05D003899 ORTHO05D003655 2.8e-10 68.9 77 44.2
AUR62003600 Chenopodium quinoa HOM05D003899 ORTHO05D003655 8.1e-10 67.4 95 40.0
SGA_v2.0_scaffold73G24343 Striga asiatica HOM05D003899 ORTHO05D003655 8.1e-10 67.4 88 37.5
Ah.05g167520 Amaranthus hybridus HOM05D000219 ORTHO05D000226 1.1e-09 67.0 88 42.0
Medtr1g029140 Medicago truncatula HOM05D003899 ORTHO05D003655 1.4e-09 66.6 83 39.8
Solyc07g045590.1 Solanum lycopersicum HOM05D003899 ORTHO05D003655 1.4e-09 66.6 103 40.8
Lalb_Chr25g0281721 Lupinus albus HOM05D003899 ORTHO05D003655 1.8e-09 66.2 83 44.6
Gohir.D02G072400 Gossypium hirsutum HOM05D003899 ORTHO05D003655 3.1e-09 65.5 88 48.9
MD10G1014900 Malus domestica HOM05D003899 ORTHO05D003655 3.1e-09 65.5 72 47.2
Psat6g033720 Pisum sativum HOM05D003899 ORTHO05D003655 4.0e-09 65.1 79 43.0
Aqoxy3G00817 Aquilegia oxysepala HOM05D003899 ORTHO05D003655 5.3e-09 64.7 87 41.4
Sed0020885 Sechium edule HOM05D003899 ORTHO05D003655 9.0e-09 63.9 76 44.7
EL10Ac7g17632 Beta vulgaris HOM05D003899 ORTHO05D003655 1.5e-08 63.2 97 35.1
ClCG09G009790 Citrullus lanatus HOM05D003899 ORTHO05D003655 1.5e-08 63.2 98 36.7
Solyc03g033280.1 Solanum lycopersicum HOM05D003899 ORTHO05D003655 1.5e-08 63.2 93 43.0
AUR62043709 Chenopodium quinoa HOM05D003899 ORTHO05D003655 2.6e-08 62.4 84 40.5
EL10Ac6g15278 Beta vulgaris HOM05D003899 ORTHO05D003655 3.4e-08 62.0 97 34.0
PGR044G1758 Punica granatum HOM05D003899 ORTHO05D003655 3.4e-08 62.0 71 45.1
Solyc03g033290.1 Solanum lycopersicum HOM05D003899 ORTHO05D003655 4.5e-08 61.6 87 42.5
PGSC0003DMG400027629 Solanum tuberosum HOM05D003899 ORTHO05D003655 5.8e-08 61.2 88 36.4
COL.COLO4_08943 Corchorus olitorius HOM05D003899 ORTHO05D003655 7.6e-08 60.8 61 47.5
Sc02g0004420 Simmondsia chinensis HOM05D003899 ORTHO05D003655 7.6e-08 60.8 72 43.1
CAN.G1012.7 Capsicum annuum HOM05D003899 ORTHO05D003655 9.9e-08 60.5 77 42.9
PGSC0003DMG400024810 Solanum tuberosum HOM05D003899 ORTHO05D003655 9.9e-08 60.5 89 42.7
Ca_12820_v3 Cicer arietinum L. HOM05D003899 ORTHO05D003655 2.2e-07 59.3 98 34.7
COL.COLO4_14024 Corchorus olitorius HOM05D003899 ORTHO05D003655 2.2e-07 59.3 60 41.7
CsaV3_7G024950 Cucumis sativus L. HOM05D000219 ORTHO05D000226 2.2e-07 59.3 91 35.2
PSO126G0001 Papaver somniferum HOM05D003899 ORTHO05D003655 2.2e-07 59.3 74 43.2
Nn1g06203 Nelumbo nucifera HOM05D003899 ORTHO05D003655 2.9e-07 58.9 91 38.5
PGSC0003DMG400024811 Solanum tuberosum HOM05D003899 ORTHO05D003655 3.8e-07 58.5 77 45.5
Manes.18G087500 Manihot esculenta HOM05D003899 ORTHO05D003655 4.9e-07 58.2 45 60.0
Medtr1g008620 Medicago truncatula HOM05D003899 ORTHO05D003655 4.9e-07 58.2 78 38.5
TPR.G12083 Trifolium pratense HOM05D003899 ORTHO05D003655 4.9e-07 58.2 68 38.2
Dinv25809 Davidia involucrata HOM05D003899 ORTHO05D003655 6.4e-07 57.8 45 51.1
Cfa013717 Carpinus fangiana HOM05D009119 ORTHO05D003655 8.4e-07 57.4 84 38.1
ECA246G3613 Erigeron canadensis HOM05D003899 ORTHO05D003655 1.1e-06 57.0 74 36.5
Nn1g06205 Nelumbo nucifera HOM05D003899 ORTHO05D003655 1.1e-06 57.0 45 55.6
Cpa.g.sc42.130 Carica papaya HOM05D003899 ORTHO05D003655 1.4e-06 56.6 62 46.8
Thhalv10012251m.g Eutrema salsugineum HOM05D003899 ORTHO05D003655 1.4e-06 56.6 80 38.8
PGR002G0009 Punica granatum HOM05D003899 ORTHO05D003655 1.4e-06 56.6 45 51.1
TWI60G1060 Tripterygium wilfordii HOM05D003899 ORTHO05D003655 1.4e-06 56.6 45 53.3
Nn5g28622 Nelumbo nucifera HOM05D003899 ORTHO05D003655 1.9e-06 56.2 47 53.2
Psat6g033800 Pisum sativum HOM05D003899 ORTHO05D003655 2.4e-06 55.8 85 34.1
CARHR046070 Cardamine hirsuta HOM05D003899 ORTHO05D003655 3.2e-06 55.5 63 44.4
AT5G48920 Arabidopsis thaliana HOM05D003899 ORTHO05D003655 4.2e-06 55.1 78 38.5
BcaB03g16849 Brassica carinata HOM05D003899 ORTHO05D003655 5.5e-06 54.7 70 41.4
Lj2C604T3 Lonicera japonica HOM05D003899 ORTHO05D003655 5.5e-06 54.7 49 44.9
Medtr1g008675 Medicago truncatula HOM05D003899 ORTHO05D003655 7.1e-06 54.3 82 32.9
Nitab4.5_0000299g0020 Nicotiana tabacum HOM05D003899 ORTHO05D003655 9.3e-06 53.9 91 38.5


User provided reference genes

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