Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR035240 Cardamine hirsuta HOM05D006245 ORTHO05D007260 1.8e-154 549.3 292 100.0
AL1G51480 Arabidopsis lyrata HOM05D006245 ORTHO05D007260 7.5e-92 341.3 313 67.1
Carub.0001s3439 Capsella rubella HOM05D006245 ORTHO05D007260 2.1e-86 323.2 300 64.7
AT1G42990 Arabidopsis thaliana HOM05D006245 ORTHO05D007260 3.4e-84 315.8 301 63.5
Sp1g32200 Schrenkiella parvula HOM05D006245 ORTHO05D007260 1.5e-79 300.4 334 62.9
Thhalv10004635m.g Eutrema salsugineum HOM05D006245 ORTHO05D007260 1.9e-79 300.1 319 62.7
BraA08t32777Z Brassica rapa HOM05D006245 ORTHO05D007260 1.5e-76 290.4 298 63.4
A08p07630 Brassica napus HOM05D006245 ORTHO05D007260 9.8e-76 287.7 298 63.1
BcaC07g37450 Brassica carinata HOM05D006245 ORTHO05D007260 6.4e-75 285.0 311 60.8
C08p09220 Brassica napus HOM05D006245 ORTHO05D007260 6.4e-75 285.0 311 60.8
BolC8t47771H Brassica oleracea HOM05D006245 ORTHO05D007260 6.4e-75 285.0 311 60.8
BcaB04g17767 Brassica carinata HOM05D006245 ORTHO05D007260 3.2e-74 282.7 314 60.8
Aa31LG6G10010 Aethionema arabicum HOM05D006245 ORTHO05D007260 1.5e-60 237.3 318 53.1
THA.LOC104813184 Tarenaya hassleriana HOM05D006245 ORTHO05D007260 2.2e-43 180.3 339 43.1
Ciclev10002005m.g Citrus clementina HOM05D006245 ORTHO05D007260 8.7e-40 168.3 300 46.0
TWI56G0455 Tripterygium wilfordii HOM05D006245 ORTHO05D007260 8.7e-40 168.3 316 46.5
Gorai.009G309200 Gossypium raimondii HOM05D006245 ORTHO05D007260 4.3e-39 166.0 289 45.7
Cpa.g.sc438.4 Carica papaya HOM05D006245 ORTHO05D007260 7.3e-39 165.2 301 44.9
Sed0007375 Sechium edule HOM05D006245 ORTHO05D007260 7.3e-39 165.2 332 41.0
Manes.18G001000 Manihot esculenta HOM05D006245 ORTHO05D007260 9.6e-39 164.9 265 47.5
Thecc.08G098200 Theobroma cacao HOM05D006245 ORTHO05D007260 2.1e-38 163.7 296 44.9
Manes.18G005000 Manihot esculenta HOM05D006245 ORTHO05D007260 2.8e-38 163.3 268 46.6
Gohir.D05G292800 Gossypium hirsutum HOM05D006245 ORTHO05D007260 6.2e-38 162.2 289 44.6
Cpa.g.c24967.6 Carica papaya HOM05D006245 ORTHO05D007260 1.8e-37 160.6 299 44.8
Gohir.A05G291700 Gossypium hirsutum HOM05D006245 ORTHO05D007260 6.9e-37 158.7 285 44.6
CsaV3_4G037700 Cucumis sativus L. HOM05D006245 ORTHO05D007260 2.2e-35 153.7 348 41.1
CiPaw.07G131600 Carya illinoinensis HOM05D006245 ORTHO05D007260 8.4e-35 151.8 296 42.2
FAN04G2011 Fragaria x ananassa HOM05D006245 ORTHO05D007260 1.4e-34 151.0 266 41.7
Dinv05508 Davidia involucrata HOM05D006245 ORTHO05D007260 1.9e-34 150.6 294 44.2
Potri.005G257900 Populus trichocarpa HOM05D006245 ORTHO05D007260 7.1e-34 148.7 283 42.0
Actinidia15551 Actinidia chinensis HOM05D006245 ORTHO05D007260 1.6e-33 147.5 298 44.3
MELO3C017064.2 Cucumis melo HOM05D006245 ORTHO05D007260 1.6e-33 147.5 341 40.8
FAN08G3087 Fragaria x ananassa HOM05D006245 ORTHO05D007260 2.7e-33 146.7 266 42.9
CANSAT11G2487 Cannabis sativa HOM05D006245 ORTHO05D007260 6.0e-33 145.6 283 42.8
CAN.G1330.24 Capsicum annuum HOM05D006245 ORTHO05D007260 1.3e-32 144.4 250 46.8
RcHm_v2.0_Chr7g0217321 Rosa chinensis HOM05D006245 ORTHO05D007260 2.3e-32 143.7 269 41.3
ClCG11G019110 Citrullus lanatus HOM05D006245 ORTHO05D007260 6.7e-32 142.1 341 40.5
TAR381G0633 Trochodendron aralioides HOM05D006245 ORTHO05D007260 1.5e-31 141.0 258 43.4
Sopen04g036530 Solanum pennellii HOM05D006245 ORTHO05D007260 7.4e-31 138.7 254 44.5
PGR083G2384 Punica granatum HOM05D006245 ORTHO05D007260 9.6e-31 138.3 253 44.7
PGSC0003DMG400010008 Solanum tuberosum HOM05D006245 ORTHO05D007260 1.3e-30 137.9 259 43.6
Atru.chr13.34 Acer truncatum HOM05D006245 ORTHO05D007260 2.1e-30 137.1 260 42.7
DCAR_017622 Daucus carota HOM05D006245 ORTHO05D007260 4.8e-30 136.0 303 41.6
Nn6g31596 Nelumbo nucifera HOM05D006245 ORTHO05D007260 1.1e-29 134.8 212 49.1
Migut.N02994 Erythranthe guttata HOM05D006245 ORTHO05D007260 1.8e-29 134.0 293 42.3
Solyc04g082890.3 Solanum lycopersicum HOM05D006245 ORTHO05D007260 1.8e-29 134.0 254 44.1
COL.COLO4_03408 Corchorus olitorius HOM05D006245 ORTHO05D007260 4.0e-29 132.9 268 43.3
Prupe.5G003000 Prunus persica HOM05D006245 ORTHO05D007260 4.0e-29 132.9 281 41.6
FAN18G3272 Fragaria x ananassa HOM05D006245 ORTHO05D007260 5.3e-29 132.5 270 40.0
SalBow6G6430 Salvia bowleyana HOM05D006245 ORTHO05D007260 6.9e-29 132.1 281 40.9
Gorai.012G007100 Gossypium raimondii HOM05D006245 ORTHO05D007260 9.0e-29 131.7 267 41.9
Gohir.D04G005900 Gossypium hirsutum HOM05D006245 ORTHO05D007260 1.2e-28 131.3 267 41.9
FvH4_5g26440 Fragaria vesca HOM05D006245 ORTHO05D007260 1.5e-28 131.0 270 39.6
FAN13G0213 Fragaria x ananassa HOM05D006245 ORTHO05D007260 1.5e-28 131.0 270 39.6
TWI36G0521 Tripterygium wilfordii HOM05D006245 ORTHO05D007260 3.4e-28 129.8 259 43.6
Migut.O00838 Erythranthe guttata HOM05D006245 ORTHO05D007260 4.5e-28 129.4 301 42.2
Haze_22875 Corylus avellana HOM05D006245 ORTHO05D007260 2.2e-27 127.1 280 41.1
MD06G1002100 Malus domestica HOM05D006245 ORTHO05D007260 2.2e-27 127.1 268 40.3
Eucgr.F03612 Eucalyptus grandis HOM05D006245 ORTHO05D007260 1.9e-26 124.0 304 39.1
QL02p016022 Quercus lobata HOM05D006245 ORTHO05D007260 4.2e-26 122.9 271 43.2
Hund01813 Selenicereus undatus HOM05D006245 ORTHO05D007260 4.2e-26 122.9 295 40.0
Lsat_1_v5_gn_2_3181 Lactuca sativa HOM05D006245 ORTHO05D007260 5.5e-26 122.5 297 38.4
Lj5g0002209 Lotus japonicus HOM05D006245 ORTHO05D007260 5.5e-26 122.5 287 39.0
PGR031G1027 Punica granatum HOM05D006245 ORTHO05D007260 5.5e-26 122.5 266 42.9
SGA_v2.0_scaffold220G42616 Striga asiatica HOM05D006245 ORTHO05D007260 1.2e-25 121.3 313 39.6
Sc02g0009330 Simmondsia chinensis HOM05D006245 ORTHO05D007260 1.6e-25 120.9 264 41.3
Lalb_Chr19g0129191 Lupinus albus HOM05D006245 ORTHO05D007260 2.1e-25 120.6 290 39.3
Cfa014151 Carpinus fangiana HOM05D006245 ORTHO05D007260 3.5e-25 119.8 281 40.2
Aqoxy6G03039 Aquilegia oxysepala HOM05D006245 ORTHO05D007260 6.0e-25 119.0 170 51.8
CiPaw.08G078200 Carya illinoinensis HOM05D006245 ORTHO05D007260 6.0e-25 119.0 300 38.7
Eucgr.F01824 Eucalyptus grandis HOM05D006245 ORTHO05D007260 6.0e-25 119.0 310 41.6
GSVIVG01013443001 Vitis vinifera HOM05D006245 ORTHO05D007260 1.0e-24 118.2 166 50.6
MSTRG.24524 Avicennia marina HOM05D006245 ORTHO05D007260 1.3e-24 117.9 306 37.6
Duzib114G1035 Durio zibethinus HOM05D006245 ORTHO05D007260 1.8e-24 117.5 213 43.2
MSTRG.22076 Avicennia marina HOM05D006245 ORTHO05D007260 8.7e-24 115.2 273 38.5
Phvul.007G247600 Phaseolus vulgaris HOM05D006245 ORTHO05D007260 8.7e-24 115.2 253 40.7
ECA248G0813 Erigeron canadensis HOM05D004589 ORTHO05D005848 1.1e-23 114.8 154 53.2
EL10Ac1g01844 Beta vulgaris HOM05D006245 ORTHO05D007260 1.5e-23 114.4 293 37.2
arahy.Tifrunner.gnm1.ann1.ZHJ1I0 Arachis hypogaea HOM05D006245 ORTHO05D007260 2.5e-23 113.6 266 39.1
Psat6g093400 Pisum sativum HOM05D006245 ORTHO05D007260 5.6e-23 112.5 293 39.9
Medtr1g050502 Medicago truncatula HOM05D006245 ORTHO05D007260 7.4e-23 112.1 293 38.2
Rhsim06G0001900 Rhododendron simsii HOM05D006245 ORTHO05D007260 9.6e-23 111.7 323 36.8
arahy.Tifrunner.gnm1.ann1.9KRV5K Arachis hypogaea HOM05D006245 ORTHO05D007260 1.3e-22 111.3 244 41.0
TPR.G10624 Trifolium pratense HOM05D006245 ORTHO05D007260 2.1e-22 110.5 202 43.1
Cc10_g00180 Coffea canephora HOM05D006245 ORTHO05D007260 3.7e-22 109.8 267 36.7
vmacro21743 Vaccinium macrocarpon HOM05D006245 ORTHO05D007260 4.8e-22 109.4 294 39.1
Glyma.02G161100 Glycine max HOM05D006245 ORTHO05D007260 6.2e-22 109.0 277 38.3
MBI04_g42540_MAGBIO Magnolia biondii HOM05D006245 ORTHO05D007260 6.2e-22 109.0 299 36.8
Peaxi162Scf00385g00068 Petunia axillaris HOM05D006245 ORTHO05D007260 1.1e-21 108.2 238 42.0
Duzib106G1614 Durio zibethinus HOM05D006245 ORTHO05D007260 1.4e-21 107.8 223 41.3
unitig_578.g16243 Utricularia gibba HOM05D006245 ORTHO05D007260 1.8e-21 107.5 291 38.5
HanXRQChr14g0427941 Helianthus annuus HOM05D006245 ORTHO05D007260 4.0e-21 106.3 153 49.7
PSO541G3542 Papaver somniferum HOM05D006245 ORTHO05D007260 5.3e-21 105.9 277 37.2
DCAR_009857 Daucus carota HOM05D006245 ORTHO05D007260 6.9e-21 105.5 152 51.3
PSO675G9277 Papaver somniferum HOM05D006245 ORTHO05D007260 2.6e-20 103.6 277 36.5
AUR62035186 Chenopodium quinoa HOM05D006245 ORTHO05D007260 3.4e-20 103.2 230 41.7
Sabra05G0199800 Salix brachista HOM05D006245 ORTHO05D007260 5.8e-20 102.4 210 41.4
AUR62041341 Chenopodium quinoa HOM05D006245 ORTHO05D007260 7.6e-20 102.1 229 41.9
unitig_8.g4814 Utricularia gibba HOM05D006245 ORTHO05D007260 7.6e-20 102.1 270 36.7
HPP92_003836 Vanilla planifolia HOM05D006245 ORTHO05D007260 1.4e-18 97.8 295 32.9
CSS0018800 Camellia sinensis var. sinensis HOM05D006245 ORTHO05D007260 1.9e-18 97.4 200 41.5
ATR0605G375 Amborella trichopoda HOM05D006245 ORTHO05D007260 5.5e-18 95.9 222 38.7
Eucgr.L02193 Eucalyptus grandis HOM05D006245 ORTHO05D007260 7.1e-18 95.5 171 49.7
Eucgr.G02751 Eucalyptus grandis HOM05D006245 ORTHO05D007260 3.5e-17 93.2 145 49.7
CDE05G2672 Ceratophyllum demersum HOM05D006245 ORTHO05D007260 6.0e-17 92.4 208 40.4
Oeu042496.1 Olea europaea HOM05D006245 ORTHO05D007260 6.0e-17 92.4 205 42.0
Gohir.A05G409532 Gossypium hirsutum HOM05D006245 ORTHO05D007260 8.7e-16 88.6 128 50.0
VMungo0720G1847 Vigna mungo HOM05D006245 ORTHO05D007260 8.7e-16 88.6 206 38.8
Ah.11g042230 Amaranthus hybridus HOM05D006245 ORTHO05D007260 1.5e-15 87.8 271 33.9
Eucgr.F02193 Eucalyptus grandis HOM05D006245 ORTHO05D007260 3.7e-14 83.2 93 62.4
Zm00001eb388050 Zea mays HOM05D006245 ORTHO05D007260 4.8e-14 82.8 247 35.2
Ca_26636_v3 Cicer arietinum L. HOM05D006245 ORTHO05D007260 2.4e-13 80.5 196 39.3
Os06g0622700 Oryza sativa ssp. japonica HOM05D006245 ORTHO05D007260 4.1e-13 79.7 175 40.0
Gorai.006G220700 Gossypium raimondii HOM05D006245 ORTHO05D007260 9.0e-13 78.6 61 65.6
Nitab4.5_0000464g0100 Nicotiana tabacum HOM05D006245 ORTHO05D007260 2.0e-12 77.4 257 35.8
Gohir.D08G092150 Gossypium hirsutum HOM05D006245 ORTHO05D007260 4.6e-09 66.2 69 53.6
Gorai.004G097700 Gossypium raimondii HOM05D006245 ORTHO05D007260 5.1e-08 62.8 180 35.0
Actinidia17088 Actinidia chinensis HOM05D001218 ORTHO05D004088 1.9e-07 60.8 97 47.4
AUR62043321 Chenopodium quinoa HOM05D006245 ORTHO05D007260 9.7e-07 58.5 61 57.4


User provided reference genes

Program Settings