Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR035030 Cardamine hirsuta HOM05D008117 ORTHO05D010265 1.0e-38 162.9 83 100.0
Thhalv10009847m.g Eutrema salsugineum HOM05D008117 ORTHO05D010265 2.2e-33 145.2 83 88.0
C01p32870 Brassica napus HOM05D008117 ORTHO05D010265 7.9e-31 136.7 82 86.6
AT1G36380 Arabidopsis thaliana HOM05D008117 ORTHO05D010265 1.0e-30 136.3 73 93.2
Carub.0001s3375 Capsella rubella HOM05D008117 ORTHO05D010265 1.4e-30 136.0 83 83.1
BolC1t03228H Brassica oleracea HOM05D008117 ORTHO05D010265 1.8e-30 135.6 82 85.4
A01p25940 Brassica napus HOM05D008117 ORTHO05D010265 2.3e-30 135.2 82 84.1
A05p19980 Brassica napus HOM05D008117 ORTHO05D010265 1.1e-27 126.3 80 81.2
BraA05t20905Z Brassica rapa HOM05D008117 ORTHO05D010265 1.1e-27 126.3 80 81.2
Aa31LG6G9030 Aethionema arabicum HOM05D008117 ORTHO05D010265 3.3e-21 104.8 79 72.2
FvH4_5g38460 Fragaria vesca HOM05D008117 ORTHO05D010265 8.2e-20 100.1 76 67.1
FAN13G1450 Fragaria x ananassa HOM05D008117 ORTHO05D010265 1.1e-19 99.8 76 67.1
FAN08G2903 Fragaria x ananassa HOM05D008117 ORTHO05D010265 1.4e-19 99.4 76 65.8
CSS0024149 Camellia sinensis var. sinensis HOM05D008117 ORTHO05D010265 2.0e-18 95.5 80 63.8
FAN04G0767 Fragaria x ananassa HOM05D008117 ORTHO05D010265 4.5e-18 94.4 63 71.4
PGR042G1408 Punica granatum HOM05D008117 ORTHO05D010265 4.5e-18 94.4 73 69.9
CANSAT35G0099 Cannabis sativa HOM05D008117 ORTHO05D010265 1.3e-17 92.8 65 72.3
Ciclev10002965m.g Citrus clementina HOM05D008117 ORTHO05D010265 1.3e-17 92.8 76 64.5
DCAR_028229 Daucus carota HOM05D008117 ORTHO05D010265 2.2e-17 92.0 74 66.2
Oeu002001.1 Olea europaea HOM05D008117 ORTHO05D010265 2.2e-17 92.0 75 60.0
PGSC0003DMG400006546 Solanum tuberosum HOM05D008117 ORTHO05D010265 3.8e-17 91.3 80 58.8
Gohir.A05G231100 Gossypium hirsutum HOM05D008117 ORTHO05D010265 1.1e-16 89.7 80 62.5
Rhsim13G0192300 Rhododendron simsii HOM05D008117 ORTHO05D010265 1.1e-16 89.7 76 61.8
RcHm_v2.0_Chr7g0240501 Rosa chinensis HOM05D008117 ORTHO05D010265 1.1e-16 89.7 76 63.2
QL12p035434 Quercus lobata HOM05D008117 ORTHO05D010265 1.9e-16 89.0 75 64.0
CiPaw.05G230200 Carya illinoinensis HOM05D008117 ORTHO05D010265 2.5e-16 88.6 71 64.8
Eucgr.F03736 Eucalyptus grandis HOM05D008117 ORTHO05D010265 2.5e-16 88.6 75 65.3
Thecc.08G115700 Theobroma cacao HOM05D008117 ORTHO05D010265 2.5e-16 88.6 80 60.0
Manes.18G072200 Manihot esculenta HOM05D008117 ORTHO05D010265 3.2e-16 88.2 76 63.2
Sed0012248 Sechium edule HOM05D008117 ORTHO05D010265 5.5e-16 87.4 75 62.7
vmacro12526 Vaccinium macrocarpon HOM05D008117 ORTHO05D010265 5.5e-16 87.4 74 62.2
Gohir.D05G233600 Gossypium hirsutum HOM05D008117 ORTHO05D010265 7.2e-16 87.0 68 66.2
Gorai.009G241700 Gossypium raimondii HOM05D008117 ORTHO05D010265 7.2e-16 87.0 68 66.2
Sopen11g008360 Solanum pennellii HOM05D008117 ORTHO05D010265 7.2e-16 87.0 80 56.2
Duzib041G0298 Durio zibethinus HOM05D008117 ORTHO05D010265 1.2e-15 86.3 76 63.2
ClCG08G010860 Citrullus lanatus HOM05D008117 ORTHO05D010265 2.1e-15 85.5 74 63.5
Prupe.1G507400 Prunus persica HOM05D008117 ORTHO05D010265 2.1e-15 85.5 76 61.8
arahy.Tifrunner.gnm1.ann1.V815ZK Arachis hypogaea HOM05D008117 ORTHO05D010265 3.6e-15 84.7 74 63.5
arahy.Tifrunner.gnm1.ann1.J5UY3S Arachis hypogaea HOM05D008117 ORTHO05D010265 4.7e-15 84.3 74 62.2
Sabra02G0071000 Salix brachista HOM05D008117 ORTHO05D010265 8.0e-15 83.6 79 60.8
CsaV3_6G035660 Cucumis sativus L. HOM05D008117 ORTHO05D010265 1.8e-14 82.4 75 62.7
SGA_v2.0_scaffold25G11087 Striga asiatica HOM05D008117 ORTHO05D010265 1.8e-14 82.4 78 53.8
Lsat_1_v5_gn_1_112940 Lactuca sativa HOM05D006309 ORTHO05D007937 2.3e-14 82.0 77 53.2
Psat5g111920 Pisum sativum HOM05D008117 ORTHO05D010265 2.3e-14 82.0 74 59.5
Lj1g0006954 Lotus japonicus HOM05D008117 ORTHO05D010265 3.0e-14 81.6 76 59.2
HPP92_011399 Vanilla planifolia HOM05D008117 ORTHO05D010265 3.0e-14 81.6 69 60.9
Glyma.14G166600 Glycine max HOM05D008117 ORTHO05D010265 5.2e-14 80.9 76 55.3
Lalb_Chr04g0253261 Lupinus albus HOM05D008117 ORTHO05D010265 6.8e-14 80.5 76 56.6
CAN.G61.2 Capsicum annuum HOM05D008117 ORTHO05D010265 8.8e-14 80.1 76 53.9
Hund16816 Selenicereus undatus HOM05D008117 ORTHO05D010265 8.8e-14 80.1 74 62.2
MD15G1359700 Malus domestica HOM05D008117 ORTHO05D010265 1.5e-13 79.3 76 59.2
Os02g0552400 Oryza sativa ssp. japonica HOM05D008117 ORTHO05D010265 3.4e-13 78.2 73 54.8
Medtr5g062750 Medicago truncatula HOM05D008117 ORTHO05D010265 4.4e-13 77.8 76 56.6
EL10Ac5g11972 Beta vulgaris HOM05D008117 ORTHO05D010265 5.7e-13 77.4 79 59.5
Phvul.008G168800 Phaseolus vulgaris HOM05D008117 ORTHO05D010265 5.7e-13 77.4 76 56.6
AUR62002978 Chenopodium quinoa HOM05D008117 ORTHO05D010265 9.8e-13 76.6 79 55.7
MSTRG.24141 Avicennia marina HOM05D008117 ORTHO05D010265 1.3e-12 76.3 76 51.3
Glyma.13G084800 Glycine max HOM05D008117 ORTHO05D010265 1.3e-12 76.3 75 53.3
SalBow6G0993 Salvia bowleyana HOM05D008117 ORTHO05D010265 3.7e-12 74.7 47 72.3
Potri.005G171000 Populus trichocarpa HOM05D008117 ORTHO05D010265 6.3e-12 73.9 79 57.0
Nn5g27934 Nelumbo nucifera HOM05D008117 ORTHO05D010265 8.3e-12 73.6 84 51.2
Sc23g0000960 Simmondsia chinensis HOM05D008117 ORTHO05D010265 1.1e-11 73.2 80 55.0
Zm00001eb243570 Zea mays HOM05D008117 ORTHO05D010265 1.8e-11 72.4 67 59.7
Potri.002G090100 Populus trichocarpa HOM05D008117 ORTHO05D010265 2.4e-11 72.0 79 54.4
Zm00001eb227210 Zea mays HOM05D008117 ORTHO05D010265 3.1e-11 71.6 65 61.5
MELO3C030294.2 Cucumis melo HOM05D008117 ORTHO05D010265 4.1e-11 71.2 67 62.7
EL10Ac1g00048 Beta vulgaris HOM05D008117 ORTHO05D010265 3.8e-09 64.7 72 54.2
CDE08G1486 Ceratophyllum demersum HOM05D008117 ORTHO05D010265 3.8e-09 64.7 55 69.1
VMungo0647G2241 Vigna mungo HOM05D008117 ORTHO05D010265 1.9e-08 62.4 50 58.0
AagrBONN_evm.TU.Sc2ySwM_117.1449 Anthoceros agrestis HOM05D008117 ORTHO05D010265 5.5e-08 60.8 66 50.0
CDE06G1754 Ceratophyllum demersum HOM05D000001 ORTHO05D011242 1.8e-06 55.8 45 66.7


User provided reference genes

Program Settings