Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR034630 Cardamine hirsuta HOM05D007069 ORTHO05D043501 5.4e-37 157.1 79 100.0
BcaB01g05911 Brassica carinata HOM05D007069 ORTHO05D008964 6.9e-16 87.0 48 83.3
C03p02120 Brassica napus HOM05D007069 ORTHO05D008964 6.9e-16 87.0 48 83.3
BolC3t12764H Brassica oleracea HOM05D007069 ORTHO05D008964 6.9e-16 87.0 48 83.3
BraA03t09547Z Brassica rapa HOM05D007069 ORTHO05D008964 6.9e-16 87.0 48 83.3
Sp6g38230 Schrenkiella parvula HOM05D007069 ORTHO05D008964 1.2e-15 86.3 55 72.7
Aa31LG11G5390 Aethionema arabicum HOM05D007069 ORTHO05D008964 2.0e-15 85.5 48 79.2
BcaNung05855 Brassica carinata HOM05D007069 ORTHO05D008964 2.0e-15 85.5 48 81.2
Thhalv10014252m.g Eutrema salsugineum HOM05D007069 ORTHO05D008964 2.6e-15 85.1 48 81.2
CARHR208750 Cardamine hirsuta HOM05D007069 ORTHO05D008964 4.5e-15 84.3 48 81.2
AT5G04520 Arabidopsis thaliana HOM05D007069 ORTHO05D008964 1.3e-14 82.8 73 60.3
A03p01720 Brassica napus HOM05D007069 ORTHO05D008964 1.3e-14 82.8 46 80.4
Carub.0006s0346 Capsella rubella HOM05D007069 ORTHO05D008964 8.4e-14 80.1 73 58.9
Haze_02639 Corylus avellana HOM05D007069 ORTHO05D008964 2.4e-13 78.6 55 63.6
Haze_02638 Corylus avellana HOM05D007069 ORTHO05D008964 5.4e-13 77.4 55 61.8
RcHm_v2.0_Chr1g0362011 Rosa chinensis HOM05D007069 ORTHO05D008964 5.4e-13 77.4 44 77.3
Cfa011205 Carpinus fangiana HOM05D007069 ORTHO05D008964 1.2e-12 76.3 55 60.0
CiPaw.13G035300 Carya illinoinensis HOM05D007069 ORTHO05D008964 1.2e-12 76.3 54 63.0
Gohir.A10G199500 Gossypium hirsutum HOM05D007069 ORTHO05D008964 1.6e-12 75.9 53 60.4
TWI38G0334 Tripterygium wilfordii HOM05D007069 ORTHO05D008964 1.6e-12 75.9 50 62.0
FvH4_7g18310 Fragaria vesca HOM05D007069 ORTHO05D008964 2.7e-12 75.1 44 72.7
FAN01G0014 Fragaria x ananassa HOM05D007069 ORTHO05D008964 2.7e-12 75.1 44 72.7
FAN06G0840 Fragaria x ananassa HOM05D007069 ORTHO05D008964 2.7e-12 75.1 44 72.7
FAN06G2644 Fragaria x ananassa HOM05D007069 ORTHO05D008964 2.7e-12 75.1 44 72.7
FAN10G1338 Fragaria x ananassa HOM05D007069 ORTHO05D008964 2.7e-12 75.1 44 72.7
FAN10G1527 Fragaria x ananassa HOM05D007069 ORTHO05D008964 2.7e-12 75.1 44 72.7
Manes.07G092500 Manihot esculenta HOM05D007069 ORTHO05D008964 2.7e-12 75.1 70 52.9
Hund24557 Selenicereus undatus HOM05D007069 ORTHO05D008964 2.7e-12 75.1 47 68.1
QL04p040528 Quercus lobata HOM05D007069 ORTHO05D008964 3.5e-12 74.7 45 68.9
THA.LOC104826966 Tarenaya hassleriana HOM05D007069 ORTHO05D008964 3.5e-12 74.7 43 74.4
GSVIVG01034678001 Vitis vinifera HOM05D007069 ORTHO05D008964 4.6e-12 74.3 44 72.7
FAN03G0256 Fragaria x ananassa HOM05D007069 ORTHO05D008964 6.0e-12 73.9 44 70.5
Lsat_1_v5_gn_2_102980 Lactuca sativa HOM05D007069 ORTHO05D008964 6.0e-12 73.9 59 57.6
Lj1g0010075 Lotus japonicus HOM05D007069 ORTHO05D008964 6.0e-12 73.9 64 51.6
PSO063G0917 Papaver somniferum HOM05D007069 ORTHO05D008964 6.0e-12 73.9 65 56.9
Atru.chr12.946 Acer truncatum HOM05D007069 ORTHO05D008964 7.9e-12 73.6 45 66.7
CANSAT56G3057 Cannabis sativa HOM05D007069 ORTHO05D008964 7.9e-12 73.6 45 71.1
AL6G14160 Arabidopsis lyrata HOM05D007069 ORTHO05D008964 1.3e-11 72.8 68 55.9
Ciclev10032023m.g Citrus clementina HOM05D007069 ORTHO05D008964 1.3e-11 72.8 45 68.9
Cpa.g.sc128.58 Carica papaya HOM05D007069 ORTHO05D008964 1.8e-11 72.4 58 60.3
COL.COLO4_08134 Corchorus olitorius HOM05D007069 ORTHO05D008964 1.8e-11 72.4 59 59.3
EL10Ac4g08626 Beta vulgaris HOM05D007069 ORTHO05D008964 2.3e-11 72.0 66 53.0
Ca_16690_v3 Cicer arietinum L. HOM05D007069 ORTHO05D008964 2.3e-11 72.0 56 57.1
Medtr3g091130 Medicago truncatula HOM05D007069 ORTHO05D008964 3.0e-11 71.6 57 59.6
Duzib128G2015 Durio zibethinus HOM05D007069 ORTHO05D008964 3.9e-11 71.2 57 56.1
Prupe.2G205100 Prunus persica HOM05D007069 ORTHO05D008964 3.9e-11 71.2 44 68.2
TPR.G17302 Trifolium pratense HOM05D007069 ORTHO05D008964 3.9e-11 71.2 47 63.8
Eucgr.G02722 Eucalyptus grandis HOM05D007069 ORTHO05D008964 5.1e-11 70.9 44 63.6
Oeu026554.1 Olea europaea HOM05D007069 ORTHO05D008964 5.1e-11 70.9 44 68.2
CAN.G135.54 Capsicum annuum HOM05D007069 ORTHO05D008964 6.7e-11 70.5 61 54.1
HanXRQChr17g0558031 Helianthus annuus HOM05D007069 ORTHO05D008964 6.7e-11 70.5 44 68.2
Nitab4.5_0003408g0040 Nicotiana tabacum HOM05D007069 ORTHO05D008964 6.7e-11 70.5 44 63.6
Solyc11g007710.2 Solanum lycopersicum HOM05D007069 ORTHO05D008964 6.7e-11 70.5 58 55.2
arahy.Tifrunner.gnm1.ann1.E8SXRQ Arachis hypogaea HOM05D007069 ORTHO05D008964 8.7e-11 70.1 71 50.7
HanXRQChr14g0456251 Helianthus annuus HOM05D007069 ORTHO05D008964 8.7e-11 70.1 44 65.9
Phvul.009G055000 Phaseolus vulgaris HOM05D007069 ORTHO05D008964 8.7e-11 70.1 53 58.5
Potri.010G233000 Populus trichocarpa HOM05D007069 ORTHO05D008964 8.7e-11 70.1 74 50.0
Glyma.06G126900 Glycine max HOM05D007069 ORTHO05D008964 1.1e-10 69.7 47 63.8
Peaxi162Scf00398g00714 Petunia axillaris HOM05D007069 ORTHO05D008964 1.1e-10 69.7 44 65.9
Sopen11g003570 Solanum pennellii HOM05D007069 ORTHO05D008964 1.1e-10 69.7 64 51.6
PGSC0003DMG400027322 Solanum tuberosum HOM05D007069 ORTHO05D008964 1.1e-10 69.7 44 65.9
HanXRQChr17g0558021 Helianthus annuus HOM05D007069 ORTHO05D008964 1.5e-10 69.3 44 68.2
DCAR_019046 Daucus carota HOM05D007069 ORTHO05D008964 1.9e-10 68.9 75 49.3
Lj2A26T31 Lonicera japonica HOM05D007069 ORTHO05D008964 1.9e-10 68.9 53 58.5
PGR142G3703 Punica granatum HOM05D007069 ORTHO05D008964 2.5e-10 68.6 44 65.9
ECA238G0989 Erigeron canadensis HOM05D007069 ORTHO05D008964 3.3e-10 68.2 44 63.6
Dinv20852 Davidia involucrata HOM05D007069 ORTHO05D008964 4.3e-10 67.8 55 60.0
Lalb_Chr08g0240401 Lupinus albus HOM05D007069 ORTHO05D008964 4.3e-10 67.8 66 48.5
Nitab4.5_0000593g0060 Nicotiana tabacum HOM05D007069 ORTHO05D008964 4.3e-10 67.8 44 63.6
Zm00001eb017690 Zea mays HOM05D007069 ORTHO05D043501 4.3e-10 67.8 44 68.2
Os03g0363200 Oryza sativa ssp. japonica HOM05D007069 ORTHO05D008964 5.6e-10 67.4 43 69.8
SalBow4G0969 Salvia bowleyana HOM05D007069 ORTHO05D008964 5.6e-10 67.4 44 65.9
vmacro07213 Vaccinium macrocarpon HOM05D007069 ORTHO05D008964 5.6e-10 67.4 53 52.8
ClCG08G008010 Citrullus lanatus HOM05D007069 ORTHO05D008964 7.4e-10 67.0 43 65.1
CDE06G2018 Ceratophyllum demersum HOM05D007069 ORTHO05D008964 1.3e-09 66.2 76 47.4
Psat7g247440 Pisum sativum HOM05D007069 ORTHO05D008964 1.3e-09 66.2 72 50.0
Aqoxy116s003 Aquilegia oxysepala HOM05D007069 ORTHO05D008964 1.6e-09 65.9 69 46.4
Aqoxy1G00988 Aquilegia oxysepala HOM05D007069 ORTHO05D008964 1.6e-09 65.9 69 46.4
MSTRG.27516 Avicennia marina HOM05D007069 ORTHO05D008964 1.6e-09 65.9 44 63.6
MELO3C019873.2 Cucumis melo HOM05D007069 ORTHO05D008964 1.6e-09 65.9 43 67.4
CsaV3_2G032880 Cucumis sativus L. HOM05D007069 ORTHO05D008964 1.6e-09 65.9 43 67.4
Nn6g35096 Nelumbo nucifera HOM05D007069 ORTHO05D008964 1.6e-09 65.9 78 44.9
SGA_v2.0_scaffold62G21354 Striga asiatica HOM05D007069 ORTHO05D008964 1.6e-09 65.9 58 56.9
Migut.F00922 Erythranthe guttata HOM05D007069 ORTHO05D008964 2.8e-09 65.1 43 65.1
Pp3c18_11030 Physcomitrium patens HOM05D007069 ORTHO05D008964 2.8e-09 65.1 45 60.0
Sed0009885 Sechium edule HOM05D007069 ORTHO05D008964 2.8e-09 65.1 43 62.8
unitig_37.g12329 Utricularia gibba HOM05D007069 ORTHO05D008964 2.8e-09 65.1 60 53.3
arahy.Tifrunner.gnm1.ann1.HMBD7E Arachis hypogaea HOM05D000072 ORTHO05D000026 3.7e-09 64.7 71 46.5
AUR62043787 Chenopodium quinoa HOM05D007069 ORTHO05D008964 4.8e-09 64.3 42 69.0
Sabra10G0180700 Salix brachista HOM05D007069 ORTHO05D008964 4.8e-09 64.3 73 47.9
Actinidia18564 Actinidia chinensis HOM05D007069 ORTHO05D008964 6.2e-09 63.9 46 58.7
arahy.Tifrunner.gnm1.ann1.CMRY8U Arachis hypogaea HOM05D007069 ORTHO05D008964 6.2e-09 63.9 67 49.3
CSS0048393 Camellia sinensis var. sinensis HOM05D007069 ORTHO05D008964 8.1e-09 63.5 70 47.1
CSS0039280 Camellia sinensis var. sinensis HOM05D007069 ORTHO05D008964 1.1e-08 63.2 69 47.8
Cc02_g10350 Coffea canephora HOM05D007069 ORTHO05D008964 1.4e-08 62.8 44 59.1
MD01G1099600 Malus domestica HOM05D007069 ORTHO05D008964 1.8e-08 62.4 64 48.4
Rhsim03G0110200 Rhododendron simsii HOM05D007069 ORTHO05D008964 1.8e-08 62.4 76 43.4
HPP92_019367 Vanilla planifolia HOM05D007069 ORTHO05D008964 4.0e-08 61.2 56 53.6
Ah.06g187240 Amaranthus hybridus HOM05D007069 ORTHO05D008964 5.3e-08 60.8 40 62.5
SMO137G0195 Selaginella moellendorffii HOM05D007069 ORTHO05D008964 5.3e-08 60.8 47 55.3
ATR0820G197 Amborella trichopoda HOM05D007069 ORTHO05D008964 2.2e-06 55.5 39 59.0
Thhalv10012277m.g Eutrema salsugineum HOM05D007069 ORTHO05D008964 2.2e-06 55.5 31 80.6
Cre03.g212753 Chlamydomonas reinhardtii HOM05D007069 ORTHO05D008964 4.9e-06 54.3 35 65.7


User provided reference genes

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