Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR034480 Cardamine hirsuta HOM05D005616 ORTHO05D006975 1.1e-150 536.6 271 100.0
AT1G07780 Arabidopsis thaliana HOM05D005616 ORTHO05D006975 5.4e-121 438.0 258 86.8
AT5G05590 Arabidopsis thaliana HOM05D005616 ORTHO05D006975 1.2e-120 436.8 258 86.4
Carub.0006s0449 Capsella rubella HOM05D005616 ORTHO05D006975 4.6e-120 434.9 259 87.3
Thhalv10014368m.g Eutrema salsugineum HOM05D005616 ORTHO05D006975 1.0e-119 433.7 258 87.6
Sp6g37270 Schrenkiella parvula HOM05D005616 ORTHO05D006975 1.3e-119 433.3 258 86.4
AL6G15480 Arabidopsis lyrata HOM05D005616 ORTHO05D006975 1.4e-116 423.3 258 84.5
BcaB05g21694 Brassica carinata HOM05D005616 ORTHO05D006975 1.7e-114 416.4 259 84.2
BolC2t06207H Brassica oleracea HOM05D005616 ORTHO05D006975 4.9e-114 414.8 259 83.4
BraA02t04856Z Brassica rapa HOM05D005616 ORTHO05D006975 9.3e-113 410.6 259 83.0
BcaB05g21698 Brassica carinata HOM05D005616 ORTHO05D006975 1.3e-111 406.8 261 82.4
Aa31LG11G6640 Aethionema arabicum HOM05D005616 ORTHO05D006975 1.1e-108 397.1 253 79.8
THA.LOC104816542 Tarenaya hassleriana HOM05D005616 ORTHO05D006975 4.8e-101 371.7 256 73.4
Haze_17234 Corylus avellana HOM05D005616 ORTHO05D006975 1.7e-93 346.7 252 69.0
Manes.10G011400 Manihot esculenta HOM05D005616 ORTHO05D006975 4.1e-92 342.0 244 71.3
GSVIVG01032805001 Vitis vinifera HOM05D005616 ORTHO05D006975 9.1e-92 340.9 254 67.7
Medtr3g449480 Medicago truncatula HOM05D005616 ORTHO05D006975 1.5e-91 340.1 255 65.9
Medtr3g070890 Medicago truncatula HOM05D005616 ORTHO05D006975 2.6e-91 339.3 255 65.5
MD07G1223000 Malus domestica HOM05D005616 ORTHO05D006975 2.2e-90 336.3 253 68.0
Sed0025730 Sechium edule HOM05D005616 ORTHO05D006975 2.9e-90 335.9 252 65.9
Psat5g129880 Pisum sativum HOM05D005616 ORTHO05D006975 5.0e-90 335.1 255 65.1
Lj6g0010776 Lotus japonicus HOM05D005616 ORTHO05D006975 6.5e-90 334.7 255 65.1
Cfa001309 Carpinus fangiana HOM05D005616 ORTHO05D006975 1.1e-89 334.0 207 78.7
HanXRQChr08g0222401 Helianthus annuus HOM05D005616 ORTHO05D006975 1.1e-89 334.0 253 64.8
Prupe.2G251100 Prunus persica HOM05D005616 ORTHO05D006975 1.4e-89 333.6 253 67.6
MELO3C026789.2 Cucumis melo HOM05D005616 ORTHO05D006975 5.5e-89 331.6 252 66.3
FAN01G0309 Fragaria x ananassa HOM05D001932 ORTHO05D006975 5.5e-89 331.6 254 66.9
FAN07G0068 Fragaria x ananassa HOM05D005616 ORTHO05D006975 9.4e-89 330.9 253 66.8
Lj1g0010131 Lotus japonicus HOM05D005616 ORTHO05D006975 1.2e-88 330.5 255 63.9
TPR.G11210 Trifolium pratense HOM05D005616 ORTHO05D006975 1.2e-88 330.5 255 64.3
ClCG07G004280 Citrullus lanatus HOM05D005616 ORTHO05D006975 2.1e-88 329.7 269 63.9
ECA233G4091 Erigeron canadensis HOM05D005616 ORTHO05D006975 2.7e-88 329.3 253 64.4
Gohir.A04G093400 Gossypium hirsutum HOM05D005616 ORTHO05D006975 3.6e-88 328.9 239 69.5
RcHm_v2.0_Chr1g0370411 Rosa chinensis HOM05D005616 ORTHO05D006975 4.7e-88 328.6 241 68.0
CsaV3_5G010220 Cucumis sativus L. HOM05D005616 ORTHO05D006975 7.9e-88 327.8 269 63.2
CSS0029859 Camellia sinensis var. sinensis HOM05D005616 ORTHO05D006975 1.0e-87 327.4 252 67.1
FAN03G0254 Fragaria x ananassa HOM05D005616 ORTHO05D006975 1.4e-87 327.0 254 66.1
Gorai.012G116600 Gossypium raimondii HOM05D005616 ORTHO05D006975 1.4e-87 327.0 235 69.4
FAN10G3671 Fragaria x ananassa HOM05D005616 ORTHO05D006975 2.3e-87 326.2 253 66.0
Lj8A66T51 Lonicera japonica HOM05D005616 ORTHO05D006975 2.3e-87 326.2 269 63.6
Nitab4.5_0005018g0020 Nicotiana tabacum HOM05D005616 ORTHO05D006975 2.3e-87 326.2 263 63.5
TWI09G1208 Tripterygium wilfordii HOM05D005616 ORTHO05D006975 3.0e-87 325.9 233 69.5
Lsat_1_v5_gn_8_11701 Lactuca sativa HOM05D005616 ORTHO05D006975 3.9e-87 325.5 241 66.0
FvH4_7g24571 Fragaria vesca HOM05D005616 ORTHO05D006975 5.1e-87 325.1 254 66.5
FAN06G2993 Fragaria x ananassa HOM05D001932 ORTHO05D006975 5.1e-87 325.1 254 66.5
FvH4_4g21980 Fragaria vesca HOM05D005616 ORTHO05D006975 6.7e-87 324.7 253 66.0
Potri.012G145600 Populus trichocarpa HOM05D005616 ORTHO05D006975 6.7e-87 324.7 254 64.6
Glyma.11G230900 Glycine max HOM05D005616 ORTHO05D006975 1.5e-86 323.6 255 63.1
Migut.F00691 Erythranthe guttata HOM05D005616 ORTHO05D006975 2.0e-86 323.2 235 68.1
FAN12G0831 Fragaria x ananassa HOM05D005616 ORTHO05D006975 2.0e-86 323.2 253 65.6
Glyma.18G026400 Glycine max HOM05D005616 ORTHO05D006975 2.6e-86 322.8 267 60.3
Lalb_Chr08g0231681 Lupinus albus HOM05D005616 ORTHO05D006975 2.6e-86 322.8 255 63.1
Dinv10614 Davidia involucrata HOM05D005616 ORTHO05D006975 5.7e-86 321.6 215 72.1
DCAR_023439 Daucus carota HOM05D005616 ORTHO05D006975 7.4e-86 321.2 211 74.4
Phvul.001G244100 Phaseolus vulgaris HOM05D005616 ORTHO05D006975 9.7e-86 320.9 262 62.2
MSTRG.8961 Avicennia marina HOM05D005616 ORTHO05D006975 1.3e-85 320.5 234 67.5
Ciclev10032361m.g Citrus clementina HOM05D005616 ORTHO05D006975 1.3e-85 320.5 248 63.7
Thecc.10G015200 Theobroma cacao HOM05D005616 ORTHO05D006975 1.7e-85 320.1 260 62.7
Nitab4.5_0003454g0010 Nicotiana tabacum HOM05D005616 ORTHO05D006975 2.2e-85 319.7 248 65.7
Duzib128G0549 Durio zibethinus HOM05D005616 ORTHO05D006975 2.8e-85 319.3 239 66.9
TAR623G1070 Trochodendron aralioides HOM05D005616 ORTHO05D006975 4.8e-85 318.5 215 71.2
CANSAT78G1638 Cannabis sativa HOM05D005616 ORTHO05D006975 8.2e-85 317.8 232 67.2
Potri.008G069500 Populus trichocarpa HOM05D005616 ORTHO05D006975 8.2e-85 317.8 252 64.3
Sopen06g017380 Solanum pennellii HOM05D005616 ORTHO05D006975 1.1e-84 317.4 247 65.2
Solyc06g051410.4 Solanum lycopersicum HOM05D005616 ORTHO05D006975 1.4e-84 317.0 240 65.8
Ca_15132_v3 Cicer arietinum L. HOM05D005616 ORTHO05D006975 3.1e-84 315.8 254 61.8
Gohir.A10G237500 Gossypium hirsutum HOM05D005616 ORTHO05D006975 4.1e-84 315.5 215 72.6
Peaxi162Scf00801g00729 Petunia axillaris HOM05D005616 ORTHO05D006975 4.1e-84 315.5 243 64.6
Solyc02g076760.3 Solanum lycopersicum HOM05D005616 ORTHO05D006975 4.1e-84 315.5 246 64.6
PGSC0003DMG400010237 Solanum tuberosum HOM05D005616 ORTHO05D006975 5.3e-84 315.1 246 65.0
Aqoxy4G02536 Aquilegia oxysepala HOM05D005616 ORTHO05D006975 9.1e-84 314.3 211 73.0
VMungo1383G1171 Vigna mungo HOM05D005616 ORTHO05D006975 9.1e-84 314.3 230 66.5
Sabra08G0051100 Salix brachista HOM05D005616 ORTHO05D006975 1.2e-83 313.9 252 63.1
CSS0002000 Camellia sinensis var. sinensis HOM05D005616 ORTHO05D006975 1.5e-83 313.5 207 73.9
PGSC0003DMG401008474 Solanum tuberosum HOM05D005616 ORTHO05D006975 1.5e-83 313.5 247 64.4
Eucgr.J00201 Eucalyptus grandis HOM05D005616 ORTHO05D006975 2.0e-83 313.2 261 62.1
Peaxi162Scf00284g01041 Petunia axillaris HOM05D005616 ORTHO05D006975 2.6e-83 312.8 234 67.1
AUR62022893 Chenopodium quinoa HOM05D005616 ORTHO05D006975 4.5e-83 312.0 236 65.7
SalBow6G5046 Salvia bowleyana HOM05D005616 ORTHO05D006975 5.9e-83 311.6 234 65.8
SGA_v2.0_scaffold60G21012 Striga asiatica HOM05D005616 ORTHO05D006975 5.9e-83 311.6 248 63.3
Cc02_g06410 Coffea canephora HOM05D005616 ORTHO05D006975 7.7e-83 311.2 249 63.9
Sopen02g021670 Solanum pennellii HOM05D005616 ORTHO05D006975 7.7e-83 311.2 246 63.4
EL10Ac1g02124 Beta vulgaris HOM05D005616 ORTHO05D006975 1.0e-82 310.8 238 65.1
PSO017G0320 Papaver somniferum HOM05D005616 ORTHO05D006975 1.0e-82 310.8 214 71.5
PGR044G0338 Punica granatum HOM05D005616 ORTHO05D006975 1.0e-82 310.8 205 74.6
AUR62012260 Chenopodium quinoa HOM05D005616 ORTHO05D006975 1.7e-82 310.1 252 63.5
PSO384G3782 Papaver somniferum HOM05D005616 ORTHO05D006975 2.2e-82 309.7 257 65.0
Oeu004695.1 Olea europaea HOM05D005616 ORTHO05D006975 2.9e-82 309.3 234 64.5
arahy.Tifrunner.gnm1.ann1.061K9L Arachis hypogaea HOM05D005616 ORTHO05D006975 5.0e-82 308.5 205 72.2
arahy.Tifrunner.gnm1.ann1.R92L2M Arachis hypogaea HOM05D005616 ORTHO05D006975 1.4e-81 307.0 204 72.5
PSO339G0515 Papaver somniferum HOM05D005616 ORTHO05D006975 1.9e-81 306.6 253 63.2
vmacro06962 Vaccinium macrocarpon HOM05D005616 ORTHO05D006975 1.9e-81 306.6 253 62.8
CSS0019139 Camellia sinensis var. sinensis HOM05D005616 ORTHO05D006975 2.5e-81 306.2 207 72.9
Sc10g0002410 Simmondsia chinensis HOM05D005616 ORTHO05D006975 3.2e-81 305.8 229 65.9
SGA_v2.0_scaffold105G30487 Striga asiatica HOM05D005616 ORTHO05D006975 1.6e-80 303.5 241 63.9
PSO675G8834 Papaver somniferum HOM05D005616 ORTHO05D006975 2.7e-80 302.8 268 59.0
MBI19_g36756_MAGBIO Magnolia biondii HOM05D005616 ORTHO05D006975 2.3e-79 299.7 209 69.9
Hund13869 Selenicereus undatus HOM05D005616 ORTHO05D006975 2.6e-78 296.2 252 59.1
AT1G29410 Arabidopsis thaliana HOM05D005616 ORTHO05D006975 1.3e-77 293.9 194 80.4
COL.COLO4_25743 Corchorus olitorius HOM05D005616 ORTHO05D006975 1.3e-77 293.9 226 66.4
CiPaw.02G193000 Carya illinoinensis HOM05D005616 ORTHO05D006975 2.8e-77 292.7 221 65.6
SHI03421 Sapria himalayana HOM05D005616 ORTHO05D006975 7.0e-76 288.1 246 60.2
Gohir.D04G132700 Gossypium hirsutum HOM05D005616 ORTHO05D006975 1.2e-75 287.3 208 68.8
Gohir.D10G249200 Gossypium hirsutum HOM05D005616 ORTHO05D006975 5.9e-75 285.0 233 62.7
Gorai.011G289500 Gossypium raimondii HOM05D005616 ORTHO05D006975 1.3e-74 283.9 233 62.2
Nitab4.5_0010803g0020 Nicotiana tabacum HOM05D005616 ORTHO05D006975 2.2e-74 283.1 204 70.1
HPP92_011508 Vanilla planifolia HOM05D005616 ORTHO05D006975 3.8e-74 282.3 231 59.3
Aqoxy5G03614 Aquilegia oxysepala HOM05D005616 ORTHO05D006975 1.9e-73 280.0 196 70.9
ATR0730G169 Amborella trichopoda HOM05D005616 ORTHO05D006975 2.5e-73 279.6 211 62.6
Zm00001eb203980 Zea mays HOM05D005616 ORTHO05D006975 1.4e-71 273.9 239 57.7
C02p02440 Brassica napus HOM05D005616 ORTHO05D006975 1.8e-71 273.5 183 80.3
Os02g0266000 Oryza sativa ssp. japonica HOM05D005616 ORTHO05D006975 1.5e-70 270.4 209 61.2
AUR62028615 Chenopodium quinoa HOM05D005616 ORTHO05D006975 2.6e-70 269.6 246 58.9
Zm00001eb281510 Zea mays HOM05D005616 ORTHO05D006975 2.4e-68 263.1 215 57.7
SEGI_33372 Sequoiadendron giganteum HOM05D005616 ORTHO05D006975 4.5e-67 258.8 207 60.4
unitig_0.g2023 Utricularia gibba HOM05D005616 ORTHO05D006975 8.0e-64 248.1 184 65.2
TAR369G1110 Trochodendron aralioides HOM05D005616 ORTHO05D006975 6.3e-61 238.4 153 76.5
Pp3c17_23550 Physcomitrium patens HOM05D005616 ORTHO05D006975 7.7e-59 231.5 269 45.4
Aqoxy332s005 Aquilegia oxysepala HOM05D005616 ORTHO05D006975 7.2e-57 224.9 182 66.5
AagrBONN_evm.TU.Sc2ySwM_228.1039 Anthoceros agrestis HOM05D005616 ORTHO05D006975 6.1e-56 221.9 209 51.2
Cre12.g519000 Chlamydomonas reinhardtii HOM05D005616 ORTHO05D006975 6.1e-56 221.9 258 44.6
Mapoly0041s0067 Marchantia polymorpha HOM05D005616 ORTHO05D006975 1.4e-52 210.7 228 46.1
CDE02G4500 Ceratophyllum demersum HOM05D005293 ORTHO05D006764 4.1e-52 209.1 190 55.8
CAN.G370.83 Capsicum annuum HOM05D002257 ORTHO05D006975 2.3e-50 203.4 168 64.3
SMO364G0619 Selaginella moellendorffii HOM05D005616 ORTHO05D006975 2.3e-50 203.4 212 48.1
MCO02G328 Micromonas commoda HOM05D005616 ORTHO05D006975 8.9e-47 191.4 243 38.3
Dinv21739 Davidia involucrata HOM05D005616 ORTHO05D006975 1.7e-42 177.2 130 65.4
PRCOL_00006470 Prasinoderma coloniale HOM05D005616 ORTHO05D006975 4.3e-41 172.6 217 41.5
CiPaw.01G059100 Carya illinoinensis HOM05D005616 ORTHO05D006975 2.0e-38 163.7 109 74.3
FAN17G0984 Fragaria x ananassa HOM05D002859 ORTHO05D003120 1.5e-30 137.5 118 61.9
Nn2g13147 Nelumbo nucifera HOM05D005616 ORTHO05D006975 4.1e-28 129.4 85 72.9
Potri.014G188400 Populus trichocarpa HOM05D005616 ORTHO05D006975 7.8e-27 125.2 130 53.8
DCAR_029632 Daucus carota HOM05D000090 ORTHO05D001584 6.8e-23 112.1 91 61.5
CBR_g37169 Chara braunii HOM05D005616 ORTHO05D006975 2.9e-21 106.7 144 40.3
MSTRG.13829 Avicennia marina HOM05D005616 ORTHO05D006975 3.8e-21 106.3 88 63.6
Dinv21738 Davidia involucrata HOM05D005616 ORTHO05D006975 9.6e-17 91.7 62 72.6
Atru.chr12.48 Acer truncatum HOM05D005616 ORTHO05D006975 4.9e-13 79.3 88 53.4
Cfa025268 Carpinus fangiana HOM05D003366 ORTHO05D004562 1.1e-12 78.2 246 30.9
Atru.chr7.2145 Acer truncatum HOM05D005616 ORTHO05D006975 4.8e-08 62.8 44 68.2
SGA_v2.0_scaffold250G44984 Striga asiatica HOM05D005616 ORTHO05D401959 9.9e-06 55.1 60 51.7


User provided reference genes

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