Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR034020 Cardamine hirsuta HOM05D003782 ORTHO05D004361 5.5e-44 180.6 96 100.0
CARHR011250 Cardamine hirsuta HOM05D003782 ORTHO05D004361 4.1e-31 137.9 93 83.9
AL1G22040 Arabidopsis lyrata HOM05D003782 ORTHO05D004361 5.0e-29 131.0 92 79.3
Carub.0001s1062 Capsella rubella HOM05D003782 ORTHO05D004361 8.6e-29 130.2 92 79.3
A09p64830 Brassica napus HOM05D003782 ORTHO05D004361 1.9e-28 129.0 94 77.7
BraA09t41812Z Brassica rapa HOM05D003782 ORTHO05D004361 1.9e-28 129.0 94 77.7
AT1G11060 Arabidopsis thaliana HOM05D003782 ORTHO05D004361 2.5e-28 128.6 92 79.3
Sp1g09750 Schrenkiella parvula HOM05D003782 ORTHO05D004361 2.5e-28 128.6 92 79.3
Thhalv10006765m.g Eutrema salsugineum HOM05D003782 ORTHO05D004361 5.6e-28 127.5 92 77.2
C08p48360 Brassica napus HOM05D003782 ORTHO05D004361 1.2e-27 126.3 92 77.2
BolC8t52375H Brassica oleracea HOM05D003782 ORTHO05D004361 1.2e-27 126.3 92 77.2
Aa31LG1G3850 Aethionema arabicum HOM05D003782 ORTHO05D004361 1.6e-27 125.9 92 76.1
BraA06t23977Z Brassica rapa HOM05D003782 ORTHO05D004361 6.2e-27 124.0 92 75.0
BcaC05g24980 Brassica carinata HOM05D003782 ORTHO05D004361 2.3e-26 122.1 92 73.9
BolC5t29675H Brassica oleracea HOM05D003782 ORTHO05D004361 2.3e-26 122.1 92 73.9
C05p09350 Brassica napus HOM05D003782 ORTHO05D004361 8.9e-26 120.2 92 72.8
A06p07760 Brassica napus HOM05D003782 ORTHO05D004361 1.2e-25 119.8 92 72.8
BcaC07g41789 Brassica carinata HOM05D003782 ORTHO05D004361 4.1e-23 111.3 93 69.9
Sp2g03490 Schrenkiella parvula HOM05D003782 ORTHO05D004361 7.8e-22 107.1 92 65.2
Aa31LG2G9560 Aethionema arabicum HOM05D003782 ORTHO05D004361 1.5e-20 102.8 92 67.4
AT1G61030 Arabidopsis thaliana HOM05D003782 ORTHO05D004361 2.5e-20 102.1 92 64.1
AL2G15410 Arabidopsis lyrata HOM05D003782 ORTHO05D004361 3.3e-20 101.7 93 65.6
Carub.0002s0417 Capsella rubella HOM05D003782 ORTHO05D004361 4.0e-18 94.7 92 60.9
Cpa.g.sc27.74 Carica papaya HOM05D003782 ORTHO05D004361 5.2e-18 94.4 92 57.6
CARHR052160 Cardamine hirsuta HOM05D003782 ORTHO05D004361 2.0e-17 92.4 81 66.7
Potri.011G049300 Populus trichocarpa HOM05D003782 ORTHO05D004361 2.6e-17 92.0 92 57.6
Sabra11G0033700 Salix brachista HOM05D003782 ORTHO05D004361 3.4e-17 91.7 92 57.6
Manes.16G025200 Manihot esculenta HOM05D003782 ORTHO05D004361 7.6e-17 90.5 92 58.7
Potri.004G039900 Populus trichocarpa HOM05D003782 ORTHO05D004361 1.3e-16 89.7 92 57.6
COL.COLO4_31507 Corchorus olitorius HOM05D003782 ORTHO05D004361 1.7e-16 89.4 92 53.3
Duzib160G0524 Durio zibethinus HOM05D003782 ORTHO05D004361 2.9e-16 88.6 92 52.2
Gohir.A06G209800 Gossypium hirsutum HOM05D003782 ORTHO05D004361 8.3e-16 87.0 92 53.3
Gorai.010G255000 Gossypium raimondii HOM05D003782 ORTHO05D004361 1.1e-15 86.7 92 53.3
Ciclev10014178m.g Citrus clementina HOM05D003782 ORTHO05D004361 1.4e-15 86.3 96 52.1
Gohir.A06G125300 Gossypium hirsutum HOM05D003782 ORTHO05D004361 1.4e-15 86.3 91 52.7
GSVIVG01006449001 Vitis vinifera HOM05D003782 ORTHO05D004361 1.9e-15 85.9 92 53.3
Atru.chr10.1947 Acer truncatum HOM05D003782 ORTHO05D004361 2.4e-15 85.5 92 54.3
Sabra04G0024600 Salix brachista HOM05D003782 ORTHO05D004361 2.4e-15 85.5 92 54.3
Gohir.D06G211200 Gossypium hirsutum HOM05D003782 ORTHO05D004361 4.1e-15 84.7 92 52.2
TWI38G1173 Tripterygium wilfordii HOM05D003782 ORTHO05D004361 7.1e-15 84.0 92 52.2
Manes.17G043000 Manihot esculenta HOM05D003782 ORTHO05D004361 9.2e-15 83.6 92 54.3
Thecc.06G191300 Theobroma cacao HOM05D003782 ORTHO05D004361 9.2e-15 83.6 92 52.2
Gohir.D06G130600 Gossypium hirsutum HOM05D003782 ORTHO05D004361 1.6e-14 82.8 92 50.0
Gorai.010G152400 Gossypium raimondii HOM05D003782 ORTHO05D004361 1.6e-14 82.8 92 50.0
Psat7g113440 Pisum sativum HOM05D003782 ORTHO05D004361 2.1e-14 82.4 92 50.0
Dinv07533 Davidia involucrata HOM05D003782 ORTHO05D004361 2.7e-14 82.0 92 51.1
Haze_06504 Corylus avellana HOM05D003782 ORTHO05D004361 4.6e-14 81.3 92 52.2
Dinv40534 Davidia involucrata HOM05D003782 ORTHO05D004361 4.6e-14 81.3 92 51.1
Cfa000411 Carpinus fangiana HOM05D003782 ORTHO05D004361 6.0e-14 80.9 92 53.3
Hma1.2p1_0881F.1_g231940 Hydrangea macrophylla HOM05D003782 ORTHO05D004361 1.7e-13 79.3 92 48.9
MELO3C002586.2 Cucumis melo HOM05D003782 ORTHO05D004361 2.3e-13 79.0 98 48.0
QL05p039400 Quercus lobata HOM05D003782 ORTHO05D004361 2.3e-13 79.0 92 52.2
Actinidia05612 Actinidia chinensis HOM05D003782 ORTHO05D004361 3.9e-13 78.2 92 50.0
CAN.G1627.12 Capsicum annuum HOM05D003782 ORTHO05D004361 3.9e-13 78.2 92 47.8
Medtr4g089015 Medicago truncatula HOM05D003782 ORTHO05D004361 3.9e-13 78.2 92 46.7
vmacro03847 Vaccinium macrocarpon HOM05D003782 ORTHO05D004361 8.6e-13 77.0 92 48.9
CiPaw.09G056900 Carya illinoinensis HOM05D003782 ORTHO05D004361 1.1e-12 76.6 92 52.2
VMungo0251G3691 Vigna mungo HOM05D003782 ORTHO05D004361 1.5e-12 76.3 88 45.5
CiPaw.10G046700 Carya illinoinensis HOM05D003782 ORTHO05D004361 1.9e-12 75.9 91 50.5
MD05G1316600 Malus domestica HOM05D003782 ORTHO05D004361 1.9e-12 75.9 88 47.7
Phvul.002G226800 Phaseolus vulgaris HOM05D003782 ORTHO05D004361 1.9e-12 75.9 84 47.6
ClCG03G005890 Citrullus lanatus HOM05D003782 ORTHO05D004361 2.5e-12 75.5 92 47.8
Migut.H01508 Erythranthe guttata HOM05D003782 ORTHO05D004361 2.5e-12 75.5 92 47.8
Eucgr.E03352 Eucalyptus grandis HOM05D003782 ORTHO05D004361 2.5e-12 75.5 72 52.8
FAN25G2149 Fragaria x ananassa HOM05D003782 ORTHO05D004361 2.5e-12 75.5 89 49.4
Lalb_Chr20g0122011 Lupinus albus HOM05D003782 ORTHO05D004361 3.3e-12 75.1 92 46.7
FvH4_3g04800 Fragaria vesca HOM05D003782 ORTHO05D004361 4.3e-12 74.7 89 49.4
FAN11G2511 Fragaria x ananassa HOM05D003782 ORTHO05D004361 4.3e-12 74.7 89 49.4
MD10G1297100 Malus domestica HOM05D003782 ORTHO05D004361 4.3e-12 74.7 88 47.7
Nitab4.5_0011233g0010 Nicotiana tabacum HOM05D003782 ORTHO05D004361 4.3e-12 74.7 92 46.7
Solyc02g078560.4 Solanum lycopersicum HOM05D003782 ORTHO05D004361 4.3e-12 74.7 92 46.7
Sopen02g023410 Solanum pennellii HOM05D003782 ORTHO05D004361 4.3e-12 74.7 92 46.7
CSS0005863 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 5.6e-12 74.3 92 45.7
CSS0007425 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 5.6e-12 74.3 92 45.7
FAN16G0824 Fragaria x ananassa HOM05D003782 ORTHO05D004361 5.6e-12 74.3 89 48.3
Nitab4.5_0003668g0120 Nicotiana tabacum HOM05D003782 ORTHO05D004361 5.6e-12 74.3 92 47.8
FAN21G1192 Fragaria x ananassa HOM05D003782 ORTHO05D004361 7.3e-12 73.9 82 50.0
Glyma.13G181800 Glycine max HOM05D003782 ORTHO05D004361 7.3e-12 73.9 87 47.1
PGR042G3934 Punica granatum HOM05D003782 ORTHO05D004361 1.2e-11 73.2 84 51.2
RcHm_v2.0_Chr5g0007891 Rosa chinensis HOM05D003782 ORTHO05D004361 1.2e-11 73.2 84 48.8
Ca_18527_v3 Cicer arietinum L. HOM05D003782 ORTHO05D004361 1.6e-11 72.8 92 44.6
Lj4g0027811 Lotus japonicus HOM05D003782 ORTHO05D004361 1.6e-11 72.8 92 46.7
Lalb_Chr09g0327561 Lupinus albus HOM05D003782 ORTHO05D004361 2.1e-11 72.4 92 47.8
AUR62014785 Chenopodium quinoa HOM05D003782 ORTHO05D004361 2.8e-11 72.0 92 47.8
Sed0005800 Sechium edule HOM05D003782 ORTHO05D004361 2.8e-11 72.0 96 44.8
MSTRG.14684 Avicennia marina HOM05D003782 ORTHO05D004361 3.6e-11 71.6 84 48.8
TPR.G12054 Trifolium pratense HOM05D003782 ORTHO05D004361 3.6e-11 71.6 92 44.6
CsaV3_1G012120 Cucumis sativus L. HOM05D003782 ORTHO05D004361 4.7e-11 71.2 96 47.9
Glyma.07G194500 Glycine max HOM05D003782 ORTHO05D004361 4.7e-11 71.2 87 48.3
Peaxi162Scf00379g00065 Petunia axillaris HOM05D003782 ORTHO05D004361 4.7e-11 71.2 92 45.7
CANSAT35G1194 Cannabis sativa HOM05D003782 ORTHO05D004361 6.2e-11 70.9 96 46.9
SalBow7G0271 Salvia bowleyana HOM05D003782 ORTHO05D004361 6.2e-11 70.9 92 46.7
SalBow7G0940 Salvia bowleyana HOM05D003782 ORTHO05D004361 6.2e-11 70.9 92 46.7
arahy.Tifrunner.gnm1.ann1.1A97AW Arachis hypogaea HOM05D003782 ORTHO05D004361 8.1e-11 70.5 83 49.4
AUR62016973 Chenopodium quinoa HOM05D003782 ORTHO05D004361 8.1e-11 70.5 96 43.8
SGA_v2.0_scaffold49G18282 Striga asiatica HOM05D003782 ORTHO05D004361 8.1e-11 70.5 84 46.4
FAN07G0886 Fragaria x ananassa HOM05D003782 ORTHO05D004361 1.1e-10 70.1 79 48.1
arahy.Tifrunner.gnm1.ann1.2GZF7Z Arachis hypogaea HOM05D003782 ORTHO05D004361 1.4e-10 69.7 83 49.4
HanXRQChr08g0209481 Helianthus annuus HOM05D003782 ORTHO05D004361 1.4e-10 69.7 92 46.7
Hund23698 Selenicereus undatus HOM05D003782 ORTHO05D004361 1.4e-10 69.7 92 45.7
Lj1C1208G1 Lonicera japonica HOM05D003782 ORTHO05D004361 1.8e-10 69.3 93 46.2
HanXRQChr04g0124181 Helianthus annuus HOM05D003782 ORTHO05D004361 5.2e-10 67.8 80 48.8
Ah.14g089260 Amaranthus hybridus HOM05D003782 ORTHO05D004361 6.8e-10 67.4 90 46.7
Aqoxy4G01073 Aquilegia oxysepala HOM05D003782 ORTHO05D004361 8.9e-10 67.0 92 42.4
Oeu014694.1 Olea europaea HOM05D003782 ORTHO05D004361 8.9e-10 67.0 82 46.3
DCAR_008048 Daucus carota HOM05D003782 ORTHO05D004361 1.2e-09 66.6 78 47.4
Lsat_1_v5_gn_7_19080 Lactuca sativa HOM05D003782 ORTHO05D004361 1.2e-09 66.6 78 50.0
Prupe.4G043300 Prunus persica HOM05D003782 ORTHO05D004361 1.2e-09 66.6 88 43.2
Sc05g0007840 Simmondsia chinensis HOM05D003782 ORTHO05D004361 1.2e-09 66.6 92 44.6
Cc02_g13030 Coffea canephora HOM05D003782 ORTHO05D004361 1.5e-09 66.2 92 41.3
Lalb_Chr05g0218361 Lupinus albus HOM05D003782 ORTHO05D004361 2.6e-09 65.5 92 43.5
Sed0026382 Sechium edule HOM05D003782 ORTHO05D004361 2.6e-09 65.5 92 46.7
EL10Ac8g20337 Beta vulgaris HOM05D003782 ORTHO05D004361 5.8e-09 64.3 92 42.4
arahy.Tifrunner.gnm1.ann1.HPML60 Arachis hypogaea HOM05D003782 ORTHO05D004361 9.9e-09 63.5 92 43.5
Ah.09g235740 Amaranthus hybridus HOM05D003782 ORTHO05D004361 1.3e-08 63.2 94 43.6
PSO210G1870 Papaver somniferum HOM05D003782 ORTHO05D004361 2.2e-08 62.4 92 42.4
Lj6g0027699 Lotus japonicus HOM05D003782 ORTHO05D004361 2.9e-08 62.0 84 42.9
RhsimUnG0044200 Rhododendron simsii HOM05D003782 ORTHO05D004361 3.8e-08 61.6 125 34.4
TAR624G0538 Trochodendron aralioides HOM05D003782 ORTHO05D003724 3.8e-08 61.6 116 38.8
Lj6g0013812 Lotus japonicus HOM05D003782 ORTHO05D004361 6.4e-08 60.8 84 42.9
arahy.Tifrunner.gnm1.ann1.AS4EHM Arachis hypogaea HOM05D003782 ORTHO05D004361 2.4e-07 58.9 92 41.3
PSO832G0898 Papaver somniferum HOM05D003782 ORTHO05D004361 2.7e-06 55.5 92 39.1
ATR0680G033 Amborella trichopoda HOM05D003782 ORTHO05D004361 3.5e-06 55.1 89 40.4
unitig_26.g9369 Utricularia gibba HOM05D003782 ORTHO05D004361 3.5e-06 55.1 92 39.1
MBI17_g03751_MAGBIO Magnolia biondii HOM05D003782 ORTHO05D004361 4.6e-06 54.7 91 38.5


User provided reference genes

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