Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR033810 Cardamine hirsuta HOM05D004393 ORTHO05D004897 0.0e+00 2243.0 1174 100.0
AL1G48910 Arabidopsis lyrata HOM05D004393 ORTHO05D004897 0.0e+00 1320.1 1326 61.4
Carub.0001s3249 Capsella rubella HOM05D004393 ORTHO05D004897 0.0e+00 1269.6 1162 63.8
AT1G34355 Arabidopsis thaliana HOM05D004393 ORTHO05D004897 0.0e+00 1251.9 1350 57.4
Sp1g29580 Schrenkiella parvula HOM05D004393 ORTHO05D004897 0.0e+00 1247.3 1286 60.0
Thhalv10006568m.g Eutrema salsugineum HOM05D004393 ORTHO05D004897 0.0e+00 1197.2 1284 58.8
BraA10t43355Z Brassica rapa HOM05D004393 ORTHO05D004897 5.7e-292 1008.1 1145 56.3
A10p12670 Brassica napus HOM05D004393 ORTHO05D004897 2.2e-291 1006.1 1132 56.9
C09p46070 Brassica napus HOM05D004393 ORTHO05D004897 1.2e-286 990.3 1137 56.0
BolC9t57476H Brassica oleracea HOM05D004393 ORTHO05D004897 1.2e-286 990.3 1137 56.0
BcaC04g20233 Brassica carinata HOM05D004393 ORTHO05D004897 1.7e-283 979.9 1291 51.4
BcaB07g33130 Brassica carinata HOM05D004393 ORTHO05D004897 1.3e-280 970.3 1273 52.6
C06p11600 Brassica napus HOM05D004393 ORTHO05D004897 2.6e-268 929.5 1264 50.6
BolC6t36294H Brassica oleracea HOM05D004393 ORTHO05D004897 4.9e-267 925.2 1264 50.6
BcaC08g43782 Brassica carinata HOM05D004393 ORTHO05D004897 6.2e-262 908.3 1289 49.6
Aa31LG6G8430 Aethionema arabicum HOM05D004393 ORTHO05D004897 4.4e-244 849.0 1270 46.9
BraA09t38751Z Brassica rapa HOM05D004393 ORTHO05D004897 5.8e-212 742.3 1161 46.7
A09p32120 Brassica napus HOM05D004393 ORTHO05D004897 2.3e-155 554.3 589 60.3
THA.LOC104813097 Tarenaya hassleriana HOM05D004393 ORTHO05D004897 2.1e-137 494.6 1084 36.9
BcaC07g37547 Brassica carinata HOM05D004393 ORTHO05D004897 3.8e-102 377.5 347 66.3
BraA08t32845Z Brassica rapa HOM05D004393 ORTHO05D004897 3.2e-101 374.4 333 67.6
BcaB04g17878 Brassica carinata HOM05D004393 ORTHO05D004897 1.2e-100 372.5 371 62.5
BolC8t47860H Brassica oleracea HOM05D004393 ORTHO05D004897 3.5e-100 370.9 347 65.7
A08p08270 Brassica napus HOM05D004393 ORTHO05D004897 9.0e-96 356.3 333 64.9
Ciclev10000264m.g Citrus clementina HOM05D004393 ORTHO05D004897 3.9e-91 340.9 537 44.9
Rhsim06G0097300 Rhododendron simsii HOM05D004393 ORTHO05D004897 5.9e-87 327.0 618 39.3
Manes.18G099700 Manihot esculenta HOM05D004393 ORTHO05D004897 4.2e-85 320.9 589 39.0
Potri.013G114700 Populus trichocarpa HOM05D004393 ORTHO05D004897 1.2e-84 319.3 547 42.4
Prupe.8G054200 Prunus persica HOM05D004393 ORTHO05D004897 2.7e-84 318.2 494 44.3
Haze_17905 Corylus avellana HOM05D004393 ORTHO05D004897 1.4e-83 315.8 719 37.1
Thecc.08G202200 Theobroma cacao HOM05D004393 ORTHO05D004897 1.8e-83 315.5 792 34.6
Cfa018204 Carpinus fangiana HOM05D004393 ORTHO05D004897 3.0e-83 314.7 768 35.4
Atru.chr13.1813 Acer truncatum HOM05D004393 ORTHO05D004897 1.5e-82 312.4 735 36.3
Duzib116G0396 Durio zibethinus HOM05D004393 ORTHO05D004897 4.3e-82 310.8 650 38.0
GSVIVG01034506001 Vitis vinifera HOM05D004393 ORTHO05D004897 9.7e-82 309.7 568 40.5
QL02p034089 Quercus lobata HOM05D004393 ORTHO05D004897 4.8e-81 307.4 584 38.2
Actinidia23321 Actinidia chinensis HOM05D004393 ORTHO05D004897 6.3e-81 307.0 785 34.6
Sabra13G0097000 Salix brachista HOM05D004393 ORTHO05D004897 6.3e-81 307.0 491 43.6
vmacro12498 Vaccinium macrocarpon HOM05D004393 ORTHO05D004897 6.3e-81 307.0 515 41.0
Cpa.g.sc66.57 Carica papaya HOM05D004393 ORTHO05D004897 7.7e-79 300.1 690 36.2
A07p08200 Brassica napus HOM05D004393 ORTHO05D004897 2.9e-78 298.1 330 56.1
BraA07t28604Z Brassica rapa HOM05D004393 ORTHO05D004897 2.9e-78 298.1 330 56.1
CsaV3_7G024210 Cucumis sativus L. HOM05D004393 ORTHO05D004897 2.9e-78 298.1 660 36.7
C07p12350 Brassica napus HOM05D004393 ORTHO05D004897 5.0e-78 297.4 290 61.0
Lalb_Chr03g0035861 Lupinus albus HOM05D004393 ORTHO05D004897 2.5e-77 295.0 710 35.1
TAR381G1591 Trochodendron aralioides HOM05D004393 ORTHO05D004897 2.5e-77 295.0 620 38.1
CSS0013393 Camellia sinensis var. sinensis HOM05D004393 ORTHO05D004897 5.5e-77 293.9 493 41.4
COL.COLO4_29964 Corchorus olitorius HOM05D004393 ORTHO05D004897 9.4e-77 293.1 520 41.0
BcaB06g26599 Brassica carinata HOM05D004393 ORTHO05D004897 4.7e-76 290.8 273 61.9
Lj2g0019211 Lotus japonicus HOM05D004393 ORTHO05D004897 6.1e-76 290.4 590 36.6
MD05G1040500 Malus domestica HOM05D004393 ORTHO05D004897 7.9e-76 290.0 605 37.4
BcaC06g35663 Brassica carinata HOM05D004393 ORTHO05D004897 1.0e-75 289.7 267 63.7
CiPaw.16G062700 Carya illinoinensis HOM05D004393 ORTHO05D004897 1.4e-75 289.3 665 35.3
Sopen11g009080 Solanum pennellii HOM05D004393 ORTHO05D004897 2.3e-75 288.5 575 37.4
Nn5g27793 Nelumbo nucifera HOM05D004393 ORTHO05D004897 3.0e-75 288.1 524 40.3
Gorai.006G131600 Gossypium raimondii HOM05D004393 ORTHO05D004897 5.1e-75 287.3 487 43.7
Solyc11g017130.2 Solanum lycopersicum HOM05D004393 ORTHO05D004897 1.5e-74 285.8 575 37.0
Gohir.A09G117000 Gossypium hirsutum HOM05D004393 ORTHO05D004897 2.0e-74 285.4 371 48.2
Gohir.D09G113900 Gossypium hirsutum HOM05D004393 ORTHO05D004897 2.0e-74 285.4 487 43.7
Lalb_Chr01g0009981 Lupinus albus HOM05D004393 ORTHO05D004897 7.4e-74 283.5 557 38.2
PGR042G3903 Punica granatum HOM05D004393 ORTHO05D004897 3.7e-73 281.2 772 33.4
Nitab4.5_0004461g0010 Nicotiana tabacum HOM05D004393 ORTHO05D004897 6.3e-73 280.4 577 37.3
Nitab4.5_0009001g0010 Nicotiana tabacum HOM05D004393 ORTHO05D004897 8.2e-73 280.0 725 33.4
Hund27078 Selenicereus undatus HOM05D004393 ORTHO05D004897 1.8e-72 278.9 500 40.2
PGSC0003DMG402026117 Solanum tuberosum HOM05D004393 ORTHO05D004897 2.4e-72 278.5 587 36.3
Nitab4.5_0000159g0160 Nicotiana tabacum HOM05D004393 ORTHO05D004897 4.1e-72 277.7 375 45.1
AUR62023578 Chenopodium quinoa HOM05D004393 ORTHO05D004897 7.0e-72 276.9 487 40.0
Nitab4.5_0000303g0030 Nicotiana tabacum HOM05D004393 ORTHO05D004897 4.5e-71 274.2 582 37.3
Sc01g0001720 Simmondsia chinensis HOM05D004393 ORTHO05D004897 5.9e-71 273.9 635 34.6
Peaxi162Scf00268g01216 Petunia axillaris HOM05D004393 ORTHO05D004897 1.7e-70 272.3 600 36.5
Phvul.004G084400 Phaseolus vulgaris HOM05D004393 ORTHO05D004897 1.7e-70 272.3 459 41.0
Sopen06g023940 Solanum pennellii HOM05D004393 ORTHO05D004897 5.0e-70 270.8 589 35.8
Peaxi162Scf00495g00119 Petunia axillaris HOM05D004393 ORTHO05D004897 6.5e-70 270.4 430 40.9
AUR62004661 Chenopodium quinoa HOM05D004393 ORTHO05D004897 1.1e-69 269.6 566 37.3
CAN.G61.21 Capsicum annuum HOM05D004393 ORTHO05D004897 1.5e-69 269.2 633 34.6
CAN.G199.23 Capsicum annuum HOM05D004393 ORTHO05D004897 1.9e-69 268.9 583 37.6
FvH4_2g12232 Fragaria vesca HOM05D004393 ORTHO05D004897 2.5e-69 268.5 590 36.9
RcHm_v2.0_Chr6g0272171 Rosa chinensis HOM05D004393 ORTHO05D004897 2.5e-69 268.5 704 33.8
VMungo0464G1718 Vigna mungo HOM05D004393 ORTHO05D004897 2.5e-69 268.5 652 34.4
Solyc06g065450.3 Solanum lycopersicum HOM05D004393 ORTHO05D004897 1.2e-68 266.2 591 35.4
FAN24G3447 Fragaria x ananassa HOM05D004393 ORTHO05D004897 2.7e-68 265.0 584 36.3
CANSAT25G3510 Cannabis sativa HOM05D004393 ORTHO05D004897 8.0e-68 263.5 541 37.3
PGSC0003DMG400009216 Solanum tuberosum HOM05D004393 ORTHO05D004897 3.0e-67 261.5 244 58.2
ClCG09G010400 Citrullus lanatus HOM05D004393 ORTHO05D004897 8.8e-67 260.0 869 30.8
Glyma.02G074500 Glycine max HOM05D004393 ORTHO05D004897 1.1e-66 259.6 465 39.8
FAN20G0457 Fragaria x ananassa HOM05D004393 ORTHO05D004897 1.5e-66 259.2 653 33.5
Oeu021008.1 Olea europaea HOM05D004393 ORTHO05D004897 2.6e-66 258.5 679 33.1
Glyma.16G156500 Glycine max HOM05D004393 ORTHO05D004897 4.4e-66 257.7 469 39.2
PSO782G0828 Papaver somniferum HOM05D004393 ORTHO05D004897 9.7e-66 256.5 839 30.9
PSO170G6764 Papaver somniferum HOM05D004393 ORTHO05D004897 2.2e-65 255.4 791 32.4
FAN27G3511 Fragaria x ananassa HOM05D004393 ORTHO05D004897 2.8e-65 255.0 648 32.6
Cc00_g08770 Coffea canephora HOM05D004393 ORTHO05D004897 3.7e-65 254.6 498 38.6
MELO3C023669.2 Cucumis melo HOM05D004393 ORTHO05D004897 6.3e-65 253.8 614 37.0
TWI60G1027 Tripterygium wilfordii HOM05D004393 ORTHO05D004897 6.3e-65 253.8 670 35.4
Oeu039591.2 Olea europaea HOM05D004393 ORTHO05D004897 5.3e-64 250.8 600 33.7
MD10G1046600 Malus domestica HOM05D004393 ORTHO05D004897 9.1e-64 250.0 577 35.2
arahy.Tifrunner.gnm1.ann1.Y0NS3Z Arachis hypogaea HOM05D004393 ORTHO05D004897 4.5e-63 247.7 582 33.5
arahy.Tifrunner.gnm1.ann1.1646XJ Arachis hypogaea HOM05D004393 ORTHO05D004897 7.7e-63 246.9 591 32.8
DCAR_014776 Daucus carota HOM05D004393 ORTHO05D004897 5.0e-62 244.2 387 41.9
Sed0026578 Sechium edule HOM05D004393 ORTHO05D004897 8.5e-62 243.4 789 31.7
MBI16_g07683_MAGBIO Magnolia biondii HOM05D004393 ORTHO05D004897 5.5e-61 240.7 328 48.2
MSTRG.25436 Avicennia marina HOM05D004393 ORTHO05D004897 1.2e-60 239.6 695 33.4
ATR0584G230 Amborella trichopoda HOM05D004393 ORTHO05D004897 2.1e-60 238.8 482 36.7
Aqoxy6G00122 Aquilegia oxysepala HOM05D004393 ORTHO05D004897 1.8e-59 235.7 638 31.8
Ah.05g177790 Amaranthus hybridus HOM05D004393 ORTHO05D004897 4.4e-58 231.1 567 33.7
BolC7t41736H Brassica oleracea HOM05D004393 ORTHO05D004897 9.1e-56 223.4 222 62.2
SalBow7G1128 Salvia bowleyana HOM05D004393 ORTHO05D004897 2.7e-55 221.9 481 36.4
HPP92_019371 Vanilla planifolia HOM05D004393 ORTHO05D004897 1.1e-53 216.5 482 35.1
arahy.Tifrunner.gnm1.ann1.MV35XS Arachis hypogaea HOM05D004393 ORTHO05D004897 1.9e-53 215.7 485 33.2
SGA_v2.0_scaffold118G32462 Striga asiatica HOM05D004393 ORTHO05D004897 1.2e-52 213.0 532 35.3
Lj5g0027195 Lotus japonicus HOM05D004393 ORTHO05D004897 3.0e-51 208.4 813 31.6
Os11g0171700 Oryza sativa ssp. japonica HOM05D004393 ORTHO05D004897 6.8e-51 207.2 448 37.1
Phvul.007G090600 Phaseolus vulgaris HOM05D004393 ORTHO05D004897 8.8e-51 206.8 488 35.0
arahy.Tifrunner.gnm1.ann1.6817V4 Arachis hypogaea HOM05D004393 ORTHO05D004897 2.0e-50 205.7 485 32.8
Glyma.10G215100 Glycine max HOM05D004393 ORTHO05D004897 2.6e-50 205.3 383 37.3
Lj7C297T5 Lonicera japonica HOM05D004393 ORTHO05D004897 9.8e-50 203.4 315 43.8
VMungo0720G0020 Vigna mungo HOM05D004393 ORTHO05D004897 9.8e-50 203.4 389 36.5
Zm00001eb091700 Zea mays HOM05D004393 ORTHO05D004897 4.5e-47 194.5 400 38.2
Medtr1g096000 Medicago truncatula HOM05D004393 ORTHO05D004897 5.0e-46 191.0 272 43.8
Migut.C01240 Erythranthe guttata HOM05D004393 ORTHO05D004897 4.3e-45 188.0 503 33.0
CDE04G2403 Ceratophyllum demersum HOM05D004393 ORTHO05D004897 9.5e-45 186.8 331 41.4
SEGI_03768 Sequoiadendron giganteum HOM05D004393 ORTHO05D004897 6.1e-44 184.1 297 38.7
TPR.G1817 Trifolium pratense HOM05D004393 ORTHO05D004897 5.2e-43 181.0 734 28.2
SGA_v2.0_scaffold24G10548 Striga asiatica HOM05D004393 ORTHO05D004897 2.0e-42 179.1 548 33.0
Psat6g185840 Pisum sativum HOM05D004393 ORTHO05D004897 2.2e-41 175.6 209 44.5
Ca_10603_v3 Cicer arietinum L. HOM05D004393 ORTHO05D004897 1.4e-40 172.9 491 32.6
Lsat_1_v5_gn_4_119261 Lactuca sativa HOM05D004393 ORTHO05D004897 3.2e-40 171.8 223 43.5
ECA232G2172 Erigeron canadensis HOM05D004393 ORTHO05D004897 2.3e-38 165.6 355 34.4
HanXRQChr09g0268931 Helianthus annuus HOM05D004393 ORTHO05D004897 8.6e-38 163.7 515 29.7
SHI09053 Sapria himalayana HOM05D004393 ORTHO05D004897 8.6e-38 163.7 419 31.7
TAR624G0853 Trochodendron aralioides HOM05D004393 ORTHO05D004897 2.6e-34 152.1 142 56.3
AagrBONN_evm.TU.Sc2ySwM_344.4382 Anthoceros agrestis HOM05D004393 ORTHO05D004897 8.3e-33 147.1 281 35.9
SMO351G0170 Selaginella moellendorffii HOM05D004393 ORTHO05D004897 2.0e-31 142.5 385 31.2
Mapoly0005s0164 Marchantia polymorpha HOM05D004393 ORTHO05D004897 8.9e-27 127.1 335 31.0
Lalb_Chr24g0401061 Lupinus albus HOM05D004393 ORTHO05D004897 2.9e-25 122.1 163 44.2
Pp3c16_5970 Physcomitrium patens HOM05D043451 ORTHO05D004897 2.9e-25 122.1 210 37.1
Pp3c27_1110 Physcomitrium patens HOM05D004393 ORTHO05D004897 3.2e-24 118.6 240 34.6
AUR62012506 Chenopodium quinoa HOM05D004393 ORTHO05D004897 7.1e-24 117.5 248 39.5
Glyma.20G176566 Glycine max HOM05D004393 ORTHO05D004897 1.1e-21 110.2 270 33.3
Pp3c5_9820 Physcomitrium patens HOM05D004393 ORTHO05D004897 2.8e-20 105.5 470 25.7
EL10Ac1g00069 Beta vulgaris HOM05D004393 ORTHO05D004897 1.8e-19 102.8 153 43.8
CDE12G0855 Ceratophyllum demersum HOM05D004393 ORTHO05D004897 2.9e-17 95.5 116 46.6
Dinv01093 Davidia involucrata HOM05D004393 ORTHO05D004897 7.8e-15 87.4 353 28.9
Peaxi162Scf00207g01617 Petunia axillaris HOM05D004393 ORTHO05D004897 3.0e-14 85.5 200 31.0
Eucgr.F02629 Eucalyptus grandis HOM05D004393 ORTHO05D004897 3.4e-10 72.0 405 26.7
Actinidia32880 Actinidia chinensis HOM05D004393 ORTHO05D004897 1.6e-07 63.2 169 33.7
TAR624G0562 Trochodendron aralioides HOM05D004393 ORTHO05D004897 2.3e-06 59.3 353 27.2
SMO231G0043 Selaginella moellendorffii HOM05D055046 ORTHO05D004897 5.1e-06 58.2 89 40.4


User provided reference genes

Program Settings