Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR032830 Cardamine hirsuta HOM05D005592 ORTHO05D006067 2.5e-172 608.6 294 100.0
AT1G33400 Arabidopsis thaliana HOM05D005592 ORTHO05D006067 2.3e-149 532.3 293 87.4
Carub.0001s3159 Capsella rubella HOM05D005592 ORTHO05D006067 4.8e-147 524.6 294 86.7
BcaB03g13702 Brassica carinata HOM05D005592 ORTHO05D006067 9.0e-146 520.4 294 86.4
AL1G47780 Arabidopsis lyrata HOM05D005592 ORTHO05D006067 1.9e-143 512.7 293 85.3
A05p24340 Brassica napus HOM05D005592 ORTHO05D006067 4.2e-143 511.5 291 85.9
BraA05t21327Z Brassica rapa HOM05D005592 ORTHO05D006067 4.2e-143 511.5 291 85.9
BolC5t32537H Brassica oleracea HOM05D005592 ORTHO05D006067 7.2e-143 510.8 291 85.9
Thhalv10006832m.g Eutrema salsugineum HOM05D005592 ORTHO05D006067 1.6e-142 509.6 285 87.0
BcaC05g27807 Brassica carinata HOM05D005592 ORTHO05D006067 4.6e-142 508.1 291 85.6
C05p38090 Brassica napus HOM05D005592 ORTHO05D006067 4.6e-142 508.1 291 85.6
Sp1g28850 Schrenkiella parvula HOM05D005592 ORTHO05D006067 2.2e-139 499.2 291 83.8
Aa31LG6G7910 Aethionema arabicum HOM05D005592 ORTHO05D006067 8.5e-128 460.7 293 73.7
THA.LOC104813079 Tarenaya hassleriana HOM05D005592 ORTHO05D006067 9.5e-103 377.5 290 64.5
COL.COLO4_19504 Corchorus olitorius HOM05D005592 ORTHO05D006067 1.9e-79 300.1 286 52.8
Duzib066G0005 Durio zibethinus HOM05D005592 ORTHO05D006067 2.3e-77 293.1 290 52.1
Thecc.10G188900 Theobroma cacao HOM05D005592 ORTHO05D006067 4.4e-76 288.9 292 50.7
Lj1C971G13 Lonicera japonica HOM05D005592 ORTHO05D006067 5.8e-76 288.5 296 49.7
Gohir.D13G009600 Gossypium hirsutum HOM05D005592 ORTHO05D006067 1.7e-75 287.0 291 50.9
Gohir.A13G008900 Gossypium hirsutum HOM05D005592 ORTHO05D006067 4.9e-75 285.4 291 50.2
Gorai.013G010300 Gossypium raimondii HOM05D005592 ORTHO05D006067 3.2e-74 282.7 291 50.2
Cfa001174 Carpinus fangiana HOM05D005592 ORTHO05D006067 2.1e-73 280.0 289 48.8
Potri.016G144200 Populus trichocarpa HOM05D005592 ORTHO05D006067 5.1e-72 275.4 287 47.4
Actinidia13627 Actinidia chinensis HOM05D005592 ORTHO05D006067 1.2e-70 270.8 291 48.8
Hma1.2p1_0264F.1_g105700 Hydrangea macrophylla HOM05D005592 ORTHO05D006067 1.2e-70 270.8 291 47.8
Hma1.2p1_0264F.1_g105710 Hydrangea macrophylla HOM05D005592 ORTHO05D006067 1.2e-70 270.8 291 47.8
TWI75G0267 Tripterygium wilfordii HOM05D005592 ORTHO05D006067 1.2e-70 270.8 289 48.1
Sabra04G0160100 Salix brachista HOM05D005592 ORTHO05D006067 8.1e-70 268.1 287 46.7
Ciclev10030128m.g Citrus clementina HOM05D005592 ORTHO05D006067 2.4e-69 266.5 289 48.1
TAR369G0313 Trochodendron aralioides HOM05D005592 ORTHO05D006067 2.4e-69 266.5 287 47.0
Glyma.06G139600 Glycine max HOM05D005592 ORTHO05D006067 8.9e-69 264.6 287 47.0
Manes.18G121600 Manihot esculenta HOM05D005592 ORTHO05D006067 2.6e-68 263.1 287 46.3
MD07G1239100 Malus domestica HOM05D005592 ORTHO05D006067 9.9e-68 261.2 286 46.5
FAN03G0809 Fragaria x ananassa HOM05D005592 ORTHO05D006067 1.3e-67 260.8 286 46.9
RcHm_v2.0_Chr1g0372931 Rosa chinensis HOM05D005592 ORTHO05D006067 4.9e-67 258.8 286 47.2
Migut.F00557 Erythranthe guttata HOM05D005592 ORTHO05D006067 6.4e-67 258.5 282 49.3
FAN01G0671 Fragaria x ananassa HOM05D005592 ORTHO05D006067 8.4e-67 258.1 286 46.5
Psat5g070400 Pisum sativum HOM05D005592 ORTHO05D006067 1.4e-66 257.3 284 45.1
Ca_16843_v3 Cicer arietinum L. HOM05D005592 ORTHO05D006067 1.9e-66 256.9 286 44.8
TPR.G13972 Trifolium pratense HOM05D005592 ORTHO05D006067 4.2e-66 255.8 284 45.8
Eucgr.H00237 Eucalyptus grandis HOM05D005592 ORTHO05D006067 7.1e-66 255.0 289 46.7
FvH4_7g26380 Fragaria vesca HOM05D005592 ORTHO05D006067 9.3e-66 254.6 286 46.5
Nn5g26734 Nelumbo nucifera HOM05D005592 ORTHO05D006067 9.3e-66 254.6 287 46.7
Medtr3g093440 Medicago truncatula HOM05D005592 ORTHO05D006067 1.2e-65 254.2 284 44.7
CANSAT56G3301 Cannabis sativa HOM05D005592 ORTHO05D006067 2.1e-65 253.4 291 44.7
MELO3C002725.2 Cucumis melo HOM05D005592 ORTHO05D006067 3.5e-65 252.7 290 44.5
Glyma.04G225100 Glycine max HOM05D005592 ORTHO05D006067 7.8e-65 251.5 287 44.6
CsaV3_1G032540 Cucumis sativus L. HOM05D005592 ORTHO05D006067 1.3e-64 250.8 290 44.5
Sed0013074 Sechium edule HOM05D005592 ORTHO05D006067 1.7e-64 250.4 292 45.2
ClCG03G006970 Citrullus lanatus HOM05D005592 ORTHO05D006067 3.0e-64 249.6 290 44.8
HanXRQChr09g0252351 Helianthus annuus HOM05D005592 ORTHO05D006067 3.9e-64 249.2 283 46.6
arahy.Tifrunner.gnm1.ann1.8FW391 Arachis hypogaea HOM05D005592 ORTHO05D006067 1.1e-63 247.7 283 44.9
CiPaw.01G308100 Carya illinoinensis HOM05D005592 ORTHO05D006067 3.3e-63 246.1 250 48.0
Cc02_g04980 Coffea canephora HOM05D005592 ORTHO05D006067 5.6e-63 245.4 287 44.3
AUR62031675 Chenopodium quinoa HOM05D005592 ORTHO05D006067 4.8e-62 242.3 284 41.9
Peaxi162Scf00073g02027 Petunia axillaris HOM05D005592 ORTHO05D006067 4.8e-62 242.3 294 45.2
arahy.Tifrunner.gnm1.ann1.IE8JUR Arachis hypogaea HOM05D005592 ORTHO05D006067 4.0e-61 239.2 272 44.9
Sopen03g025240 Solanum pennellii HOM05D005592 ORTHO05D006067 4.0e-61 239.2 282 43.6
Lalb_Chr23g0272061 Lupinus albus HOM05D005592 ORTHO05D006067 5.3e-61 238.8 287 42.9
CAN.G1151.3 Capsicum annuum HOM05D005592 ORTHO05D006067 1.2e-60 237.7 284 44.0
SalBow3G4308 Salvia bowleyana HOM05D005592 ORTHO05D006067 2.6e-60 236.5 290 41.7
Aqoxy2G00637 Aquilegia oxysepala HOM05D005592 ORTHO05D006067 4.5e-60 235.7 287 41.5
EL10Ac2g02700 Beta vulgaris HOM05D005592 ORTHO05D006067 2.2e-59 233.4 294 39.1
PSO339G4695 Papaver somniferum HOM05D005592 ORTHO05D006067 2.9e-59 233.0 293 41.3
Nitab4.5_0001130g0030 Nicotiana tabacum HOM05D005592 ORTHO05D006067 4.9e-59 232.3 292 42.5
Atru.chr12.227 Acer truncatum HOM05D005592 ORTHO05D006067 8.4e-59 231.5 222 49.5
Lj1g0017160 Lotus japonicus HOM05D005592 ORTHO05D006067 1.4e-58 230.7 284 43.0
VMungo1309G2865 Vigna mungo HOM05D005592 ORTHO05D006067 5.4e-58 228.8 268 43.7
Sc10g0003140 Simmondsia chinensis HOM05D005592 ORTHO05D006067 9.3e-58 228.0 290 42.4
Prupe.2G267900 Prunus persica HOM05D005592 ORTHO05D006067 2.1e-57 226.9 293 42.3
vmacro06869 Vaccinium macrocarpon HOM05D005592 ORTHO05D006067 2.7e-57 226.5 291 41.2
ECA232G3941 Erigeron canadensis HOM05D005592 ORTHO05D006067 2.3e-56 223.4 302 41.7
Nitab4.5_0000103g0070 Nicotiana tabacum HOM05D005592 ORTHO05D006067 6.7e-56 221.9 290 42.4
AUR62032559 Chenopodium quinoa HOM05D005592 ORTHO05D006067 5.6e-55 218.8 303 38.3
Hund15772 Selenicereus undatus HOM05D005592 ORTHO05D006067 3.6e-54 216.1 292 40.8
Ah.10g029720 Amaranthus hybridus HOM05D005592 ORTHO05D006067 1.1e-53 214.5 289 39.8
PGR083G1109 Punica granatum HOM05D005592 ORTHO05D006067 1.5e-52 210.7 303 37.6
DCAR_018065 Daucus carota HOM05D005592 ORTHO05D006067 2.0e-52 210.3 289 39.8
unitig_37.g12479 Utricularia gibba HOM05D005592 ORTHO05D006067 4.5e-52 209.1 279 39.4
Actinidia27253 Actinidia chinensis HOM05D005592 ORTHO05D006067 4.2e-50 202.6 270 41.9
GSVIVG01032876001 Vitis vinifera HOM05D005592 ORTHO05D006067 6.0e-49 198.7 222 45.0
Lsat_1_v5_gn_9_60521 Lactuca sativa HOM05D005592 ORTHO05D006067 1.8e-48 197.2 281 40.2
Zm00001eb044040 Zea mays HOM05D005592 ORTHO05D006067 1.8e-48 197.2 283 36.4
ATR1126G052 Amborella trichopoda HOM05D005592 ORTHO05D006067 3.9e-48 196.1 286 37.4
HPP92_022562 Vanilla planifolia HOM05D005592 ORTHO05D006067 3.9e-48 196.1 289 39.1
Cpa.g.sc41.43 Carica papaya HOM05D005592 ORTHO05D006067 1.1e-47 194.5 194 50.0
Rhsim03G0155100 Rhododendron simsii HOM05D005592 ORTHO05D006067 4.8e-46 189.1 345 34.2
Haze_17388 Corylus avellana HOM05D005592 ORTHO05D006067 9.0e-45 184.9 225 44.0
Os10g0506800 Oryza sativa ssp. japonica HOM05D005592 ORTHO05D006067 1.0e-43 181.4 287 32.1
Dinv21875 Davidia involucrata HOM05D005592 ORTHO05D006067 1.1e-42 177.9 265 38.5
AL8G14960 Arabidopsis lyrata HOM05D005592 ORTHO05D006067 9.3e-42 174.9 94 93.6
Oeu008098.1 Olea europaea HOM05D005592 ORTHO05D006067 7.2e-34 148.7 178 45.5
SHI08066 Sapria himalayana HOM05D005592 ORTHO05D006067 1.3e-32 144.4 292 29.8
AL8G14970 Arabidopsis lyrata HOM05D005592 ORTHO05D006067 6.7e-32 142.1 77 93.5
Phvul.009G040900 Phaseolus vulgaris HOM05D005592 ORTHO05D006067 6.9e-29 132.1 166 43.4
Thecc.10G188600 Theobroma cacao HOM05D005592 ORTHO05D006067 8.8e-24 115.2 150 40.7
Pp3c22_7900 Physcomitrium patens HOM05D005592 ORTHO05D006067 5.7e-23 112.5 280 27.5
Eucgr.L02747 Eucalyptus grandis HOM05D005592 ORTHO05D006067 8.2e-22 108.6 101 48.5
SMO165G0048 Selaginella moellendorffii HOM05D005592 ORTHO05D006067 1.9e-18 97.4 282 29.1
CDE04G0667 Ceratophyllum demersum HOM05D005592 ORTHO05D006067 3.6e-17 93.2 106 45.3
SEGI_10878 Sequoiadendron giganteum HOM05D001800 ORTHO05D000007 4.7e-17 92.8 156 32.7
AagrBONN_evm.TU.Sc2ySwM_344.3534 Anthoceros agrestis HOM05D005592 ORTHO05D006067 1.8e-16 90.9 235 27.2
CSS0024281 Camellia sinensis var. sinensis HOM05D005592 ORTHO05D006067 1.6e-12 77.8 69 55.1
Prupe.1G112400 Prunus persica HOM05D005592 ORTHO05D006067 1.6e-12 77.8 162 34.0
FAN06G1899 Fragaria x ananassa HOM05D005592 ORTHO05D006067 1.5e-10 71.2 39 74.4
Cpa.g.sc41.42 Carica papaya HOM05D005592 ORTHO05D006067 4.4e-07 59.7 68 52.9
CSS0035505 Camellia sinensis var. sinensis HOM05D005592 ORTHO05D006067 2.8e-06 57.0 87 35.6
Nitab4.5_0000633g0160 Nicotiana tabacum HOM05D004492 ORTHO05D005602 8.2e-06 55.5 307 18.2


User provided reference genes

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