Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR031750 Cardamine hirsuta HOM05D006869 ORTHO05D008641 1.5e-66 256.1 139 100.0
AT1G32370 Arabidopsis thaliana HOM05D006869 ORTHO05D008641 2.3e-51 205.7 121 95.0
Thhalv10009100m.g Eutrema salsugineum HOM05D006869 ORTHO05D008641 2.0e-50 202.6 121 92.6
Carub.0001s3075 Capsella rubella HOM05D006869 ORTHO05D008641 2.6e-50 202.2 120 92.5
AL1G46570 Arabidopsis lyrata HOM05D006869 ORTHO05D008641 1.3e-49 199.9 121 91.7
BcaC05g27275 Brassica carinata HOM05D006869 ORTHO05D008641 1.6e-47 193.0 122 88.5
C05p31830 Brassica napus HOM05D006869 ORTHO05D008641 1.6e-47 193.0 122 88.5
BolC5t31911H Brassica oleracea HOM05D006869 ORTHO05D008641 1.6e-47 193.0 122 88.5
Sp1g28510 Schrenkiella parvula HOM05D006869 ORTHO05D008641 1.6e-47 193.0 121 88.4
BcaB07g32921 Brassica carinata HOM05D006869 ORTHO05D008641 4.6e-47 191.4 122 87.7
A09p33790 Brassica napus HOM05D006869 ORTHO05D008641 5.9e-47 191.0 122 87.7
BraA09t38929Z Brassica rapa HOM05D006869 ORTHO05D008641 5.9e-47 191.0 122 87.7
Aa31LG2G13630 Aethionema arabicum HOM05D006869 ORTHO05D008641 1.5e-45 186.4 121 85.1
THA.LOC104798593 Tarenaya hassleriana HOM05D006869 ORTHO05D008641 1.6e-44 183.0 125 80.0
THA.LOC104798477 Tarenaya hassleriana HOM05D006869 ORTHO05D008641 2.3e-43 179.1 121 81.8
THA.LOC104822843 Tarenaya hassleriana HOM05D006869 ORTHO05D008641 8.9e-35 150.6 123 70.7
MD06G1029000 Malus domestica HOM05D006869 ORTHO05D008641 5.6e-29 131.3 117 66.7
Prupe.5G042800 Prunus persica HOM05D006869 ORTHO05D008641 5.6e-29 131.3 119 65.5
Cpa.g.sc6.427 Carica papaya HOM05D006869 ORTHO05D008641 6.2e-28 127.9 113 70.8
Ciclev10033051m.g Citrus clementina HOM05D006869 ORTHO05D008641 2.3e-27 125.9 117 63.2
Potri.001G145500 Populus trichocarpa HOM05D006869 ORTHO05D008641 2.3e-27 125.9 123 63.4
CiPaw.12G061200 Carya illinoinensis HOM05D006869 ORTHO05D008641 3.1e-27 125.6 110 67.3
TWI15G0987 Tripterygium wilfordii HOM05D006869 ORTHO05D008641 6.8e-27 124.4 105 68.6
COL.COLO4_17099 Corchorus olitorius HOM05D006869 ORTHO05D008641 1.2e-26 123.6 125 61.6
MELO3C003378.2 Cucumis melo HOM05D006869 ORTHO05D008641 2.0e-26 122.9 115 64.3
Duzib205G1446 Durio zibethinus HOM05D006869 ORTHO05D008641 2.6e-26 122.5 126 60.3
Ca_03396_v3 Cicer arietinum L. HOM05D006869 ORTHO05D008641 3.4e-26 122.1 105 65.7
BcaC05g27873 Brassica carinata HOM05D006869 ORTHO05D008641 4.4e-26 121.7 119 69.7
C05p38760 Brassica napus HOM05D006869 ORTHO05D008641 4.4e-26 121.7 119 69.7
CSS0028384 Camellia sinensis var. sinensis HOM05D006869 ORTHO05D008641 7.6e-26 120.9 103 68.0
CSS0030709 Camellia sinensis var. sinensis HOM05D006869 ORTHO05D008641 7.6e-26 120.9 103 68.0
CsaV3_1G016990 Cucumis sativus L. HOM05D006869 ORTHO05D008641 7.6e-26 120.9 106 66.0
CsaV3_3G049460 Cucumis sativus L. HOM05D006869 ORTHO05D008641 7.6e-26 120.9 106 66.0
Manes.15G174500 Manihot esculenta HOM05D006869 ORTHO05D008641 9.9e-26 120.6 109 65.1
Thecc.03G232900 Theobroma cacao HOM05D006869 ORTHO05D008641 9.9e-26 120.6 122 61.5
Lj3g0015338 Lotus japonicus HOM05D006869 ORTHO05D008641 2.2e-25 119.4 104 66.3
Medtr2g071640 Medicago truncatula HOM05D006869 ORTHO05D008641 2.2e-25 119.4 106 64.2
Atru.chr6.1763 Acer truncatum HOM05D006869 ORTHO05D008641 2.9e-25 119.0 121 59.5
Gohir.A09G198300 Gossypium hirsutum HOM05D006869 ORTHO05D008641 2.9e-25 119.0 122 60.7
RcHm_v2.0_Chr7g0208861 Rosa chinensis HOM05D006869 ORTHO05D008641 2.9e-25 119.0 118 61.0
CiPaw.11G089700 Carya illinoinensis HOM05D006869 ORTHO05D008641 4.9e-25 118.2 119 60.5
Nn1g00590 Nelumbo nucifera HOM05D006869 ORTHO05D008641 6.4e-25 117.9 125 60.0
Migut.D00490 Erythranthe guttata HOM05D006869 ORTHO05D008641 8.4e-25 117.5 114 61.4
FvH4_5g21430 Fragaria vesca HOM05D006869 ORTHO05D008641 1.1e-24 117.1 119 59.7
Gohir.D09G192900 Gossypium hirsutum HOM05D006869 ORTHO05D008641 1.4e-24 116.7 122 59.8
Phvul.005G061500 Phaseolus vulgaris HOM05D006869 ORTHO05D008641 1.4e-24 116.7 108 63.9
PGR042G2539 Punica granatum HOM05D006869 ORTHO05D008641 1.4e-24 116.7 116 58.6
FAN08G2623 Fragaria x ananassa HOM05D006869 ORTHO05D008641 2.4e-24 115.9 124 58.1
arahy.Tifrunner.gnm1.ann1.U4TMK5 Arachis hypogaea HOM05D006869 ORTHO05D008641 3.2e-24 115.5 120 58.3
arahy.Tifrunner.gnm1.ann1.TLF144 Arachis hypogaea HOM05D006869 ORTHO05D008641 5.4e-24 114.8 113 59.3
GSVIVG01013242001 Vitis vinifera HOM05D006869 ORTHO05D008641 5.4e-24 114.8 97 67.0
Aqoxy3G02480 Aquilegia oxysepala HOM05D006869 ORTHO05D008641 7.1e-24 114.4 99 67.7
FAN13G1368 Fragaria x ananassa HOM05D006869 ORTHO05D008641 7.1e-24 114.4 124 58.1
Glyma.13G259900 Glycine max HOM05D006869 ORTHO05D008641 7.1e-24 114.4 97 69.1
PSO832G0919 Papaver somniferum HOM05D006869 ORTHO05D008641 9.2e-24 114.0 99 69.7
TPR.G26622 Trifolium pratense HOM05D006869 ORTHO05D008641 1.2e-23 113.6 112 58.9
TAR375G0341 Trochodendron aralioides HOM05D006869 ORTHO05D008641 1.2e-23 113.6 111 62.2
MSTRG.17527 Avicennia marina HOM05D006869 ORTHO05D008641 2.1e-23 112.8 111 59.5
CANSAT21G0218 Cannabis sativa HOM05D006869 ORTHO05D008641 2.1e-23 112.8 112 60.7
arahy.Tifrunner.gnm1.ann1.4F5UFQ Arachis hypogaea HOM05D006869 ORTHO05D008641 2.7e-23 112.5 120 57.5
Sc22g0001440 Simmondsia chinensis HOM05D006869 ORTHO05D008641 2.7e-23 112.5 103 65.0
FAN04G2266 Fragaria x ananassa HOM05D006869 ORTHO05D008641 3.5e-23 112.1 125 57.6
ClCG09G012310 Citrullus lanatus HOM05D006869 ORTHO05D008641 4.6e-23 111.7 135 54.1
PSO675G8621 Papaver somniferum HOM05D006869 ORTHO05D008641 4.6e-23 111.7 99 68.7
Glyma.15G248100 Glycine max HOM05D006869 ORTHO05D008641 7.8e-23 110.9 101 66.3
VMungo1080G1596 Vigna mungo HOM05D006869 ORTHO05D008641 7.8e-23 110.9 105 61.0
BolC5t32616H Brassica oleracea HOM05D006869 ORTHO05D008641 1.0e-22 110.5 84 82.1
FAN18G0870 Fragaria x ananassa HOM05D006869 ORTHO05D008641 1.0e-22 110.5 125 56.8
Eucgr.E00305 Eucalyptus grandis HOM05D006869 ORTHO05D008641 3.0e-22 109.0 103 63.1
PSO732G0001 Papaver somniferum HOM05D006869 ORTHO05D008641 3.0e-22 109.0 99 65.7
Hund14421 Selenicereus undatus HOM05D006869 ORTHO05D008641 3.0e-22 109.0 131 55.7
Hma1.2p1_0414F.1_g147870 Hydrangea macrophylla HOM05D006869 ORTHO05D008641 5.1e-22 108.2 104 61.5
PGSC0003DMG400026597 Solanum tuberosum HOM05D006869 ORTHO05D008641 5.1e-22 108.2 126 52.4
DCAR_024975 Daucus carota HOM05D006869 ORTHO05D008641 6.6e-22 107.8 111 56.8
Zm00001eb024260 Zea mays HOM05D006869 ORTHO05D008641 6.6e-22 107.8 108 61.1
Actinidia09229 Actinidia chinensis HOM05D002067 ORTHO05D002244 1.5e-21 106.7 128 55.5
Os02g0279600 Oryza sativa ssp. japonica HOM05D006869 ORTHO05D008641 2.5e-21 105.9 95 63.2
Sopen06g021250 Solanum pennellii HOM05D006869 ORTHO05D008641 3.3e-21 105.5 116 54.3
HPP92_026375 Vanilla planifolia HOM05D006869 ORTHO05D008641 3.3e-21 105.5 109 56.9
Sabra01G0114100 Salix brachista HOM05D006869 ORTHO05D008641 1.6e-20 103.2 154 48.7
ECA233G4479 Erigeron canadensis HOM05D006869 ORTHO05D008641 2.1e-20 102.8 104 55.8
HanXRQChr08g0227941 Helianthus annuus HOM05D006869 ORTHO05D008641 6.2e-20 101.3 125 51.2
Lalb_Chr25g0285441 Lupinus albus HOM05D006869 ORTHO05D008641 1.8e-19 99.8 97 60.8
unitig_746.g26748 Utricularia gibba HOM05D006869 ORTHO05D008641 1.8e-19 99.8 112 53.6
Gorai.006G215800 Gossypium raimondii HOM05D006869 ORTHO05D008641 5.2e-19 98.2 159 45.9
DCAR_005606 Daucus carota HOM05D006869 ORTHO05D008641 2.0e-18 96.3 130 50.8
Dinv25192 Davidia involucrata HOM05D006869 ORTHO05D008641 9.9e-18 94.0 112 51.8
Actinidia14827 Actinidia chinensis HOM05D006869 ORTHO05D008641 2.2e-17 92.8 100 59.0
Nitab4.5_0003100g0080 Nicotiana tabacum HOM05D006869 ORTHO05D008641 3.2e-16 89.0 143 44.8
Sed0006536 Sechium edule HOM05D006869 ORTHO05D008641 7.1e-16 87.8 90 60.0
Oeu015441.1 Olea europaea HOM05D006869 ORTHO05D008641 7.8e-15 84.3 87 58.6
Ah.07g200090 Amaranthus hybridus HOM05D006869 ORTHO05D008641 3.9e-14 82.0 88 54.5
SEGI_28722 Sequoiadendron giganteum HOM05D006869 ORTHO05D008641 5.1e-14 81.6 90 55.6
vmacro14155 Vaccinium macrocarpon HOM05D006869 ORTHO05D008641 2.5e-13 79.3 72 62.5
Rhsim07G0123600 Rhododendron simsii HOM05D006869 ORTHO05D008641 3.3e-13 79.0 75 61.3
SGA_v2.0_scaffold94G28479 Striga asiatica HOM05D006869 ORTHO05D008641 3.3e-13 79.0 97 50.5
ATR0049G078 Amborella trichopoda HOM05D006869 ORTHO05D008641 5.6e-13 78.2 85 56.5
MBI04_g13865_MAGBIO Magnolia biondii HOM05D006869 ORTHO05D008641 7.3e-13 77.8 74 62.2
EL10Ac5g12174 Beta vulgaris HOM05D006869 ORTHO05D008641 3.6e-12 75.5 76 57.9
Lsat_1_v5_gn_6_67180 Lactuca sativa HOM05D006869 ORTHO05D008641 1.2e-10 70.5 65 60.0
Psat1g009440 Pisum sativum HOM05D006869 ORTHO05D008641 3.4e-10 68.9 59 67.8
SalBow6G5905 Salvia bowleyana HOM05D006869 ORTHO05D008641 1.3e-09 67.0 68 51.5
Nitab4.5_0004658g0060 Nicotiana tabacum HOM05D006869 ORTHO05D008641 2.2e-09 66.2 74 52.7
Cc08_g02310 Coffea canephora HOM05D006869 ORTHO05D008641 2.9e-09 65.9 66 54.5
Peaxi162Scf00497g00098 Petunia axillaris HOM05D006869 ORTHO05D008641 3.8e-09 65.5 70 54.3
Mapoly0009s0146 Marchantia polymorpha HOM05D006869 ORTHO05D008641 1.1e-08 63.9 93 43.0
PGR142G3578 Punica granatum HOM05D006869 ORTHO05D008641 4.6e-07 58.5 51 58.8
AagrBONN_evm.TU.Sc2ySwM_228.2858 Anthoceros agrestis HOM05D006869 ORTHO05D008641 7.9e-07 57.8 94 40.4
Haze_08288 Corylus avellana HOM05D006869 ORTHO05D008641 3.0e-06 55.8 43 69.8


User provided reference genes

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