Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR031570 Cardamine hirsuta HOM05D004519 ORTHO05D006283 3.1e-265 917.9 467 100.0
AL1G46330 Arabidopsis lyrata HOM05D004519 ORTHO05D006283 1.1e-238 829.7 467 91.4
AT1G32200 Arabidopsis thaliana HOM05D004519 ORTHO05D006283 2.3e-236 822.0 467 90.6
Thhalv10007540m.g Eutrema salsugineum HOM05D004519 ORTHO05D006283 1.5e-235 819.3 476 88.9
Sp1g27880 Schrenkiella parvula HOM05D004519 ORTHO05D006283 3.3e-235 818.1 475 88.2
Carub.0001s3053 Capsella rubella HOM05D004519 ORTHO05D006283 9.7e-235 816.6 466 89.7
BcaC07g37628 Brassica carinata HOM05D004519 ORTHO05D006283 4.2e-222 774.6 464 86.0
BolC8t47999H Brassica oleracea HOM05D004519 ORTHO05D006283 4.0e-220 768.1 466 85.4
BcaB03g13753 Brassica carinata HOM05D004519 ORTHO05D006283 8.8e-220 766.9 467 84.8
A08p09320 Brassica napus HOM05D004519 ORTHO05D006283 8.8e-220 766.9 464 85.1
BraA08t32930Z Brassica rapa HOM05D004519 ORTHO05D006283 8.8e-220 766.9 464 85.1
BcaC05g27905 Brassica carinata HOM05D004519 ORTHO05D006283 3.7e-218 761.5 466 84.8
BcaB04g17996 Brassica carinata HOM05D004519 ORTHO05D006283 9.1e-217 756.9 465 84.5
BcaB07g32892 Brassica carinata HOM05D004519 ORTHO05D006283 5.5e-214 747.7 468 82.9
BraA05t21393Z Brassica rapa HOM05D004519 ORTHO05D006283 1.4e-212 743.0 466 81.8
Aa31LG2G13810 Aethionema arabicum HOM05D004519 ORTHO05D006283 1.5e-211 739.6 479 80.8
A05p25130 Brassica napus HOM05D004519 ORTHO05D006283 1.5e-211 739.6 466 81.5
A09p34000 Brassica napus HOM05D004519 ORTHO05D006283 2.0e-208 729.2 468 81.6
C05p31600 Brassica napus HOM05D004519 ORTHO05D006283 3.4e-203 711.8 403 87.8
BolC5t31883H Brassica oleracea HOM05D004519 ORTHO05D006283 3.4e-203 711.8 403 87.8
BcaC05g27251 Brassica carinata HOM05D004519 ORTHO05D006283 2.2e-202 709.1 403 87.3
C05p39140 Brassica napus HOM05D004519 ORTHO05D006283 1.8e-196 689.5 427 83.8
BraA09t38946Z Brassica rapa HOM05D004519 ORTHO05D006283 1.0e-191 673.7 468 76.9
THA.LOC104812759 Tarenaya hassleriana HOM05D004519 ORTHO05D006283 8.0e-189 664.1 446 75.3
THA.LOC104814413 Tarenaya hassleriana HOM05D004519 ORTHO05D006283 8.9e-188 660.6 467 72.4
PGR042G1943 Punica granatum HOM05D004519 ORTHO05D006283 9.0e-164 580.9 409 68.7
GSVIVG01013060001 Vitis vinifera HOM05D004519 ORTHO05D006283 1.2e-163 580.5 451 65.2
Ciclev10001047m.g Citrus clementina HOM05D004519 ORTHO05D006283 1.5e-163 580.1 481 62.4
FvH4_5g23060 Fragaria vesca HOM05D004519 ORTHO05D006283 2.1e-160 569.7 432 64.8
FAN18G3814 Fragaria x ananassa HOM05D004519 ORTHO05D006283 2.1e-160 569.7 432 64.8
RcHm_v2.0_Chr7g0211781 Rosa chinensis HOM05D004519 ORTHO05D006283 4.6e-160 568.5 431 65.0
FAN04G1490 Fragaria x ananassa HOM05D004519 ORTHO05D006283 6.0e-160 568.2 429 65.3
MD06G1026700 Malus domestica HOM05D004519 ORTHO05D006283 7.8e-160 567.8 464 61.2
MD16G1279400 Malus domestica HOM05D004519 ORTHO05D006283 7.8e-160 567.8 409 67.0
PSO063G4347 Papaver somniferum HOM05D004519 ORTHO05D006283 2.3e-159 566.2 466 61.6
PSO782G3212 Papaver somniferum HOM05D004519 ORTHO05D006283 1.1e-158 563.9 465 60.9
Gorai.007G033500 Gossypium raimondii HOM05D004519 ORTHO05D006283 1.9e-158 563.1 407 69.3
Manes.17G018849 Manihot esculenta HOM05D004519 ORTHO05D006283 4.3e-158 562.0 451 62.7
CSS0024637 Camellia sinensis var. sinensis HOM05D004519 ORTHO05D006283 5.6e-158 561.6 409 66.3
Cfa012505 Carpinus fangiana HOM05D004519 ORTHO05D006283 5.6e-158 561.6 409 66.5
CiPaw.11G098500 Carya illinoinensis HOM05D004519 ORTHO05D006283 1.3e-157 560.5 466 61.6
FAN18G1908 Fragaria x ananassa HOM05D004519 ORTHO05D006283 3.6e-157 558.9 478 60.3
Gohir.A11G028600 Gossypium hirsutum HOM05D004519 ORTHO05D006283 8.1e-157 557.8 403 69.0
Potri.001G136600 Populus trichocarpa HOM05D004519 ORTHO05D006283 8.1e-157 557.8 459 61.9
Gorai.004G182200 Gossypium raimondii HOM05D004519 ORTHO05D006283 1.1e-156 557.4 466 62.4
Aqoxy3G02176 Aquilegia oxysepala HOM05D004519 ORTHO05D006283 1.4e-156 557.0 457 59.7
CsaV3_3G048840 Cucumis sativus L. HOM05D004519 ORTHO05D006283 2.4e-156 556.2 425 64.5
Dinv25262 Davidia involucrata HOM05D004519 ORTHO05D006283 3.1e-156 555.8 403 66.7
FAN13G3061 Fragaria x ananassa HOM05D004519 ORTHO05D006283 3.1e-156 555.8 408 65.9
Hma1.2p1_1569F.1_g291200 Hydrangea macrophylla HOM05D004519 ORTHO05D006283 5.3e-156 555.1 444 63.3
Gohir.D11G030600 Gossypium hirsutum HOM05D004519 ORTHO05D006283 2.0e-155 553.1 403 68.2
Nn1g00218 Nelumbo nucifera HOM05D004519 ORTHO05D006283 2.6e-155 552.7 404 66.3
Dinv29004 Davidia involucrata HOM05D004519 ORTHO05D006283 3.4e-155 552.4 409 65.8
Eucgr.E00228 Eucalyptus grandis HOM05D004519 ORTHO05D006283 3.4e-155 552.4 402 65.9
Sc01g0007150 Simmondsia chinensis HOM05D004519 ORTHO05D006283 4.5e-155 552.0 400 67.2
CiPaw.12G068400 Carya illinoinensis HOM05D004519 ORTHO05D006283 1.7e-154 550.1 402 67.9
Nn3g19385 Nelumbo nucifera HOM05D004519 ORTHO05D006283 1.7e-154 550.1 409 65.5
Oeu027094.2 Olea europaea HOM05D004519 ORTHO05D006283 2.9e-154 549.3 370 70.5
TAR629G2035 Trochodendron aralioides HOM05D004519 ORTHO05D006283 4.9e-154 548.5 470 60.0
MELO3C003440.2 Cucumis melo HOM05D004519 ORTHO05D006283 8.4e-154 547.7 401 66.6
Lalb_Chr09g0325481 Lupinus albus HOM05D004519 ORTHO05D006283 1.9e-153 546.6 465 61.3
HanXRQChr03g0083251 Helianthus annuus HOM05D004519 ORTHO05D006283 3.2e-153 545.8 433 63.7
Lalb_Chr16g0381061 Lupinus albus HOM05D004519 ORTHO05D006283 7.1e-153 544.7 366 69.1
Medtr5g029230 Medicago truncatula HOM05D004519 ORTHO05D006283 2.1e-152 543.1 366 70.5
Psat2g139000 Pisum sativum HOM05D004519 ORTHO05D006283 2.7e-152 542.7 438 63.0
Lj4g0001331 Lotus japonicus HOM05D004519 ORTHO05D006283 3.5e-152 542.3 366 69.9
Sed0022223 Sechium edule HOM05D004519 ORTHO05D006283 4.6e-152 542.0 457 61.7
MBI04_g32203_MAGBIO Magnolia biondii HOM05D004519 ORTHO05D006283 1.0e-151 540.8 450 60.4
Nitab4.5_0000529g0120 Nicotiana tabacum HOM05D004519 ORTHO05D006283 5.1e-151 538.5 408 63.7
CAN.G726.25 Capsicum annuum HOM05D004519 ORTHO05D006283 3.3e-150 535.8 466 58.8
ECA240G3299 Erigeron canadensis HOM05D004519 ORTHO05D006283 2.1e-149 533.1 376 67.6
Lsat_1_v5_gn_6_80100 Lactuca sativa HOM05D004519 ORTHO05D006283 3.7e-149 532.3 447 60.6
Migut.E00743 Erythranthe guttata HOM05D004519 ORTHO05D006283 4.8e-149 531.9 373 66.8
TPR.G19434 Trifolium pratense HOM05D004519 ORTHO05D006283 4.8e-149 531.9 439 61.3
Gohir.A03G000032 Gossypium hirsutum HOM05D004519 ORTHO05D006283 6.2e-149 531.6 478 58.4
HanXRQChr13g0414231 Helianthus annuus HOM05D004519 ORTHO05D006283 8.1e-149 531.2 375 67.7
Ca_25177_v3 Cicer arietinum L. HOM05D004519 ORTHO05D006283 1.1e-148 530.8 355 71.0
Cc08_g03490 Coffea canephora HOM05D004519 ORTHO05D006283 2.4e-148 529.6 371 69.3
Glyma.01G014200 Glycine max HOM05D004519 ORTHO05D006283 9.0e-148 527.7 366 67.8
Gorai.003G185500 Gossypium raimondii HOM05D004519 ORTHO05D006283 9.0e-148 527.7 478 58.2
Sabra01G0105700 Salix brachista HOM05D004519 ORTHO05D006283 9.0e-148 527.7 512 55.9
VMungo1215G0394 Vigna mungo HOM05D004519 ORTHO05D006283 9.0e-148 527.7 366 68.0
ClCG09G011630 Citrullus lanatus HOM05D004519 ORTHO05D006283 1.5e-147 526.9 454 61.2
Duzib205G0301 Durio zibethinus HOM05D004519 ORTHO05D006283 1.5e-147 526.9 467 60.0
MSTRG.24848 Avicennia marina HOM05D004519 ORTHO05D006283 2.0e-147 526.6 375 65.6
Glyma.09G207900 Glycine max HOM05D004519 ORTHO05D006283 2.0e-147 526.6 377 66.6
Solyc08g076470.4 Solanum lycopersicum HOM05D004519 ORTHO05D006283 1.7e-146 523.5 465 58.3
Phvul.002G136600 Phaseolus vulgaris HOM05D004519 ORTHO05D006283 2.2e-146 523.1 400 64.5
CANSAT01G0127 Cannabis sativa HOM05D004519 ORTHO05D006283 6.5e-146 521.5 356 69.9
Sopen08g025050 Solanum pennellii HOM05D004519 ORTHO05D006283 8.4e-146 521.2 465 58.1
SGA_v2.0_scaffold198G41070 Striga asiatica HOM05D004519 ORTHO05D006283 1.1e-145 520.8 478 55.2
Os10g0577900 Oryza sativa ssp. japonica HOM05D004519 ORTHO05D006283 4.2e-145 518.8 371 66.0
ATR0829G164 Amborella trichopoda HOM05D004519 ORTHO05D006283 9.3e-145 517.7 406 63.5
Prupe.5G027200 Prunus persica HOM05D004519 ORTHO05D006283 2.7e-144 516.2 426 60.6
Zm00001eb224960 Zea mays HOM05D004519 ORTHO05D006283 1.5e-142 510.4 459 57.1
Zm00001eb025080 Zea mays HOM05D004519 ORTHO05D006283 9.6e-142 507.7 362 65.5
AUR62007353 Chenopodium quinoa HOM05D004519 ORTHO05D006283 1.5e-139 500.4 431 58.9
Rhsim11G0021900 Rhododendron simsii HOM05D004519 ORTHO05D006283 2.6e-139 499.6 543 50.3
AUR62018641 Chenopodium quinoa HOM05D004519 ORTHO05D006283 7.6e-139 498.0 352 66.8
QL12p001672 Quercus lobata HOM05D004519 ORTHO05D006283 2.9e-138 496.1 554 49.8
CSS0001538 Camellia sinensis var. sinensis HOM05D004519 ORTHO05D006283 3.2e-137 492.7 333 68.8
SEGI_02196 Sequoiadendron giganteum HOM05D004519 ORTHO05D006283 1.8e-135 486.9 406 60.6
CDE12G0245 Ceratophyllum demersum HOM05D004519 ORTHO05D006283 3.9e-135 485.7 339 67.6
arahy.Tifrunner.gnm1.ann1.BI8WMI Arachis hypogaea HOM05D004519 ORTHO05D006283 6.7e-135 485.0 344 67.2
arahy.Tifrunner.gnm1.ann1.D9NVDI Arachis hypogaea HOM05D004519 ORTHO05D006283 6.7e-135 485.0 344 67.2
Duzib068G1409 Durio zibethinus HOM05D004519 ORTHO05D006283 8.7e-135 484.6 409 60.9
DCAR_008221 Daucus carota HOM05D004519 ORTHO05D006283 4.3e-134 482.3 373 63.5
Gohir.D03G176300 Gossypium hirsutum HOM05D004519 ORTHO05D006283 3.7e-133 479.2 333 68.5
vmacro00276 Vaccinium macrocarpon HOM05D004519 ORTHO05D006283 8.2e-133 478.0 329 68.1
Thecc.03G310400 Theobroma cacao HOM05D004519 ORTHO05D006283 2.4e-132 476.5 472 55.7
Lj2A231G41 Lonicera japonica HOM05D004519 ORTHO05D006283 4.5e-131 472.2 477 53.9
CDE04G2515 Ceratophyllum demersum HOM05D004519 ORTHO05D006283 6.1e-128 461.8 348 64.4
unitig_32.g10899 Utricularia gibba HOM05D004519 ORTHO05D006283 3.0e-127 459.5 411 55.7
FAN08G3243 Fragaria x ananassa HOM05D004519 ORTHO05D006283 5.7e-126 455.3 425 56.5
Gohir.A08G153600 Gossypium hirsutum HOM05D004519 ORTHO05D006283 1.7e-125 453.8 398 60.3
Gohir.D08G174500 Gossypium hirsutum HOM05D004519 ORTHO05D006283 1.7e-125 453.8 398 60.3
Mapoly0045s0098 Marchantia polymorpha HOM05D004519 ORTHO05D006283 1.4e-124 450.7 463 48.4
Nitab4.5_0012493g0010 Nicotiana tabacum HOM05D004519 ORTHO05D006283 3.8e-122 442.6 297 68.4
EL10Ac5g12013 Beta vulgaris HOM05D004519 ORTHO05D006283 1.9e-121 440.3 408 55.9
Haze_08164 Corylus avellana HOM05D004519 ORTHO05D006283 3.6e-120 436.0 436 53.7
SMO244G0022 Selaginella moellendorffii HOM05D004519 ORTHO05D006283 4.7e-120 435.6 353 58.1
Peaxi162Scf00170g00818 Petunia axillaris HOM05D004519 ORTHO05D006283 7.9e-120 434.9 398 56.3
Pp3c7_2970 Physcomitrium patens HOM05D004519 ORTHO05D006283 4.8e-117 425.6 414 48.8
HPP92_020895 Vanilla planifolia HOM05D004519 ORTHO05D006283 3.5e-115 419.5 293 66.2
AagrBONN_evm.TU.Sc2ySwM_117.1032 Anthoceros agrestis HOM05D004547 ORTHO05D005133 5.5e-113 412.1 415 52.3
HanXRQChr06g0172791 Helianthus annuus HOM05D004519 ORTHO05D006283 5.5e-113 412.1 353 59.2
EL10Ac5g12011 Beta vulgaris HOM05D004519 ORTHO05D006283 1.0e-111 407.9 383 55.1
CBR_g4494 Chara braunii HOM05D004519 ORTHO05D006283 9.1e-108 394.8 405 49.9
DCAR_004271 Daucus carota HOM05D004519 ORTHO05D006283 3.8e-106 389.4 248 72.6
Actinidia01317 Actinidia chinensis HOM05D004519 ORTHO05D006283 3.1e-100 369.8 340 60.9
Cpa.g.sc208.3 Carica papaya HOM05D004519 ORTHO05D006283 1.9e-97 360.5 217 75.6
Eucgr.E01634 Eucalyptus grandis HOM05D004519 ORTHO05D006283 2.7e-96 356.7 283 62.2
Haze_08160 Corylus avellana HOM05D004519 ORTHO05D006283 8.0e-96 355.1 255 67.8
Atru.chr6.1525 Acer truncatum HOM05D004519 ORTHO05D006283 6.4e-85 318.9 206 71.8
Cre02.g143000 Chlamydomonas reinhardtii HOM05D004519 ORTHO05D006283 4.9e-77 292.7 368 40.5
MCO03G317 Micromonas commoda HOM05D004519 ORTHO05D006283 8.1e-64 248.8 331 40.5
PRCOL_00006772 Prasinoderma coloniale HOM05D004519 ORTHO05D006283 2.6e-62 243.8 319 40.4
Actinidia29340 Actinidia chinensis HOM05D004519 ORTHO05D006283 3.0e-58 230.3 238 54.6
Hma1.2p1_3246F.1_g334370 Hydrangea macrophylla HOM05D004519 ORTHO05D006283 4.4e-46 189.9 176 52.8
Cpa.g.sc208.5 Carica papaya HOM05D004519 ORTHO05D006283 2.1e-43 181.0 211 53.6
MBI15_g25773_MAGBIO Magnolia biondii HOM05D004519 ORTHO05D006283 1.8e-31 141.4 98 66.3
Eucgr.A01818 Eucalyptus grandis HOM05D004519 ORTHO05D006283 4.2e-28 130.2 85 71.8
HanXRQChr16g0500211 Helianthus annuus HOM05D004519 ORTHO05D006283 1.7e-21 108.2 77 66.2
Haze_20066 Corylus avellana HOM05D004519 ORTHO05D007437 3.5e-19 100.5 95 50.5
Actinidia01316 Actinidia chinensis HOM05D004519 ORTHO05D006283 3.9e-18 97.1 61 68.9
COL.COLO4_16939 Corchorus olitorius HOM05D004519 ORTHO05D006283 2.2e-16 91.3 82 64.6
PGSC0003DMG401014796 Solanum tuberosum HOM05D004519 ORTHO05D006283 4.8e-16 90.1 92 45.7
arahy.Tifrunner.gnm1.ann1.LG4SFI Arachis hypogaea HOM05D000755 ORTHO05D017477 9.0e-15 85.9 108 45.4
Gohir.D08G117301 Gossypium hirsutum HOM05D004519 ORTHO05D017048 9.4e-12 75.9 55 63.6
Gohir.D11G228750 Gossypium hirsutum HOM05D004519 ORTHO05D017048 9.4e-12 75.9 55 63.6
Gohir.D11G251850 Gossypium hirsutum HOM05D004519 ORTHO05D017048 9.4e-12 75.9 55 63.6
Gohir.D13G135501 Gossypium hirsutum HOM05D004519 ORTHO05D017048 2.7e-11 74.3 55 61.8
RcHm_v2.0_Chr5g0062811 Rosa chinensis HOM05D004519 ORTHO05D017048 4.6e-11 73.6 54 61.1
Gorai.008G116000 Gossypium raimondii HOM05D004519 ORTHO05D017048 1.4e-10 72.0 44 70.5
arahy.Tifrunner.gnm1.ann1.18EICQ Arachis hypogaea HOM05D000755 ORTHO05D017477 4.5e-06 57.0 52 55.8


User provided reference genes

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