Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR030800 Cardamine hirsuta HOM05D007947 ORTHO05D010018 2.8e-32 141.4 71 100.0
AT1G31335 Arabidopsis thaliana HOM05D007947 ORTHO05D010018 4.9e-29 130.6 71 91.5
Carub.0001s2978 Capsella rubella HOM05D007947 ORTHO05D010018 1.1e-28 129.4 71 91.5
AL1G49700 Arabidopsis lyrata HOM05D007947 ORTHO05D010018 3.5e-27 124.4 71 87.3
Sp1g27170 Schrenkiella parvula HOM05D007947 ORTHO05D010018 3.0e-26 121.3 73 84.9
BcaB07g32795 Brassica carinata HOM05D007947 ORTHO05D010018 5.0e-26 120.6 73 84.9
BcaC05g27167 Brassica carinata HOM05D007947 ORTHO05D010018 6.6e-26 120.2 73 84.9
BolC5t31792H Brassica oleracea HOM05D007947 ORTHO05D010018 6.6e-26 120.2 73 84.9
A09p34910 Brassica napus HOM05D007947 ORTHO05D010018 1.5e-25 119.0 73 83.6
C05p30570 Brassica napus HOM05D007947 ORTHO05D010018 1.5e-25 119.0 73 84.9
BraA09t39021Z Brassica rapa HOM05D007947 ORTHO05D010018 1.5e-25 119.0 73 83.6
BraA07t28738Z Brassica rapa HOM05D007947 ORTHO05D010018 3.3e-25 117.9 73 82.2
BcaB03g13798 Brassica carinata HOM05D007947 ORTHO05D010018 4.3e-25 117.5 72 83.3
BolC7t41949H Brassica oleracea HOM05D007947 ORTHO05D010018 4.3e-25 117.5 72 83.3
Thhalv10009264m.g Eutrema salsugineum HOM05D007947 ORTHO05D010018 9.5e-25 116.3 73 82.2
C07p14500 Brassica napus HOM05D007947 ORTHO05D010018 2.3e-23 111.7 74 75.7
THA.LOC109116600 Tarenaya hassleriana HOM05D007947 ORTHO05D010018 4.0e-23 110.9 71 83.1
Cpa.g.sc53.149 Carica papaya HOM05D007947 ORTHO05D010018 2.4e-20 101.7 74 70.3
Phvul.008G288200 Phaseolus vulgaris HOM05D007947 ORTHO05D010018 6.0e-19 97.1 71 66.2
COL.COLO4_30922 Corchorus olitorius HOM05D007947 ORTHO05D010018 2.3e-18 95.1 67 65.7
Duzib192G0353 Durio zibethinus HOM05D007947 ORTHO05D010018 5.1e-18 94.0 67 67.2
Potri.001G082332 Populus trichocarpa HOM05D007947 ORTHO05D010018 6.6e-18 93.6 71 64.8
Eucgr.D01574 Eucalyptus grandis HOM05D007947 ORTHO05D010018 8.6e-18 93.2 64 73.4
Glyma.02G308300 Glycine max HOM05D007947 ORTHO05D010018 8.6e-18 93.2 76 60.5
Glyma.14G004800 Glycine max HOM05D007947 ORTHO05D010018 1.5e-17 92.4 71 63.4
LjContig00081g0013704 Lotus japonicus HOM05D007947 ORTHO05D010018 4.3e-17 90.9 66 68.2
TPR.G15070 Trifolium pratense HOM05D007947 ORTHO05D010018 5.6e-17 90.5 68 66.2
Ca_06479_v3 Cicer arietinum L. HOM05D007947 ORTHO05D010018 1.6e-16 89.0 66 65.2
CsaV3_5G006230 Cucumis sativus L. HOM05D007947 ORTHO05D010018 1.6e-16 89.0 68 64.7
Eucgr.E02008 Eucalyptus grandis HOM05D007947 ORTHO05D010018 1.6e-16 89.0 49 83.7
CiPaw.10G111600 Carya illinoinensis HOM05D007947 ORTHO05D010018 2.1e-16 88.6 75 58.7
ClCG02G013940 Citrullus lanatus HOM05D007947 ORTHO05D010018 3.6e-16 87.8 70 67.1
Psat2g003200 Pisum sativum HOM05D007947 ORTHO05D010018 3.6e-16 87.8 63 65.1
VMungo0647G0519 Vigna mungo HOM05D000879 ORTHO05D002864 6.2e-16 87.0 71 63.4
MELO3C011733.2 Cucumis melo HOM05D007947 ORTHO05D010018 8.1e-16 86.7 68 63.2
Nn7g37910 Nelumbo nucifera HOM05D007947 ORTHO05D010018 8.1e-16 86.7 72 59.7
PGR142G1313 Punica granatum HOM05D007947 ORTHO05D010018 8.1e-16 86.7 63 66.7
TWI73G0356 Tripterygium wilfordii HOM05D007947 ORTHO05D010018 8.1e-16 86.7 64 70.3
CANSAT35G0466 Cannabis sativa HOM05D007947 ORTHO05D010018 1.1e-15 86.3 64 65.6
RcHm_v2.0_Chr5g0018941 Rosa chinensis HOM05D007947 ORTHO05D010018 1.4e-15 85.9 70 62.9
Gohir.D10G048700 Gossypium hirsutum HOM05D007947 ORTHO05D010018 1.8e-15 85.5 64 62.5
CSS0033410 Camellia sinensis var. sinensis HOM05D007947 ORTHO05D010018 2.3e-15 85.1 71 60.6
Cfa013564 Carpinus fangiana HOM05D007947 ORTHO05D010018 4.0e-15 84.3 70 60.0
Haze_22181 Corylus avellana HOM05D007947 ORTHO05D010018 4.0e-15 84.3 70 60.0
Gorai.011G051800 Gossypium raimondii HOM05D007947 ORTHO05D010018 4.0e-15 84.3 64 62.5
Sabra03G0107800 Salix brachista HOM05D000054 ORTHO05D000171 4.0e-15 84.3 66 62.1
FAN16G2050 Fragaria x ananassa HOM05D007947 ORTHO05D010018 5.2e-15 84.0 72 61.1
Gohir.A09G076300 Gossypium hirsutum HOM05D007947 ORTHO05D010018 5.2e-15 84.0 72 55.6
Manes.03G076700 Manihot esculenta HOM05D007947 ORTHO05D010018 5.2e-15 84.0 78 60.3
Gohir.A10G047400 Gossypium hirsutum HOM05D007947 ORTHO05D010018 6.8e-15 83.6 64 62.5
Gohir.D09G076300 Gossypium hirsutum HOM05D007947 ORTHO05D010018 6.8e-15 83.6 72 55.6
Gorai.006G091500 Gossypium raimondii HOM05D007947 ORTHO05D010018 6.8e-15 83.6 72 55.6
Duzib235G0890 Durio zibethinus HOM05D007947 ORTHO05D010018 8.9e-15 83.2 61 65.6
Hma1.2p1_0326F.1_g126180 Hydrangea macrophylla HOM05D007947 ORTHO05D010018 8.9e-15 83.2 73 60.3
QL05p063460 Quercus lobata HOM05D007947 ORTHO05D010018 8.9e-15 83.2 66 60.6
Ciclev10017351m.g Citrus clementina HOM05D007947 ORTHO05D010018 1.2e-14 82.8 49 77.6
Potri.003G148100 Populus trichocarpa HOM05D007947 ORTHO05D010018 1.2e-14 82.8 66 60.6
SalBow8G2047 Salvia bowleyana HOM05D007947 ORTHO05D010018 1.2e-14 82.8 68 58.8
Medtr5g098300 Medicago truncatula HOM05D007947 ORTHO05D010018 2.0e-14 82.0 70 57.1
Zm00001eb057320 Zea mays HOM05D007947 ORTHO05D010018 4.4e-14 80.9 74 60.8
MD05G1260300 Malus domestica HOM05D007947 ORTHO05D010018 1.7e-13 79.0 69 63.8
arahy.Tifrunner.gnm1.ann1.F2U9KI Arachis hypogaea HOM05D001153 ORTHO05D000949 2.2e-13 78.6 46 73.9
Migut.M01948 Erythranthe guttata HOM05D007947 ORTHO05D010018 2.2e-13 78.6 67 59.7
FAN21G3705 Fragaria x ananassa HOM05D000217 ORTHO05D000121 2.2e-13 78.6 65 61.5
TAR626G1269 Trochodendron aralioides HOM05D007947 ORTHO05D010018 3.7e-13 77.8 65 55.4
MD10G1239200 Malus domestica HOM05D007947 ORTHO05D010018 4.9e-13 77.4 69 62.3
Nn7g37911 Nelumbo nucifera HOM05D007947 ORTHO05D010018 4.9e-13 77.4 68 63.2
Prupe.4G105200 Prunus persica HOM05D007947 ORTHO05D010018 6.4e-13 77.0 69 60.9
Sopen02g018620 Solanum pennellii HOM05D007947 ORTHO05D010018 6.4e-13 77.0 55 60.0
DCAR_007806 Daucus carota HOM05D007947 ORTHO05D010018 1.1e-12 76.3 76 53.9
PGSC0003DMG400021235 Solanum tuberosum HOM05D007947 ORTHO05D010018 1.9e-12 75.5 72 52.8
Cc09_g06500 Coffea canephora HOM05D007947 ORTHO05D010018 2.4e-12 75.1 73 53.4
Sc09g0004070 Simmondsia chinensis HOM05D007947 ORTHO05D010018 1.2e-11 72.8 51 72.5
Zm00001eb213660 Zea mays HOM05D007947 ORTHO05D010018 2.1e-11 72.0 74 55.4
Zm00001eb059730 Zea mays HOM05D007947 ORTHO05D010018 3.5e-11 71.2 68 55.9
Lalb_Chr04g0247121 Lupinus albus HOM05D007947 ORTHO05D010018 7.8e-11 70.1 68 51.5
Medtr5g098270 Medicago truncatula HOM05D007947 ORTHO05D010018 1.7e-10 68.9 50 60.0
Os03g0780200 Oryza sativa ssp. japonica HOM05D007947 ORTHO05D010018 1.7e-10 68.9 67 58.2
Oeu030705.1 Olea europaea HOM05D007947 ORTHO05D010018 8.6e-10 66.6 66 45.5
Ciclev10017780m.g Citrus clementina HOM05D007947 ORTHO05D010018 1.1e-09 66.2 39 69.2
HanXRQChr16g0528851 Helianthus annuus HOM05D007947 ORTHO05D010018 1.6e-08 62.4 59 50.8
HanXRQChr14g0454561 Helianthus annuus HOM05D009309 ORTHO05D011491 1.1e-07 59.7 54 57.4
Phvul.001G177600 Phaseolus vulgaris HOM05D009309 ORTHO05D011491 3.1e-07 58.2 50 60.0
Lsat_1_v5_gn_2_106500 Lactuca sativa HOM05D007947 ORTHO05D010018 6.8e-07 57.0 55 52.7
Lj1g0009603 Lotus japonicus HOM05D009309 ORTHO05D011491 6.8e-07 57.0 50 60.0
Glyma.19G182200 Glycine max HOM05D009309 ORTHO05D011491 8.9e-07 56.6 50 58.0
Manes.08G008300 Manihot esculenta HOM05D009309 ORTHO05D011491 8.9e-07 56.6 46 56.5
Glyma.03G181500 Glycine max HOM05D009309 ORTHO05D011491 1.5e-06 55.8 50 58.0
Dinv37295 Davidia involucrata HOM05D009309 ORTHO05D011491 3.4e-06 54.7 50 54.0
Gohir.D09G144800 Gossypium hirsutum HOM05D009309 ORTHO05D011491 9.9e-06 53.1 64 48.4
Gorai.006G166100 Gossypium raimondii HOM05D009309 ORTHO05D011491 9.9e-06 53.1 64 48.4


User provided reference genes

Program Settings