Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR030670 Cardamine hirsuta HOM05D007940 ORTHO05D010046 2.2e-48 195.3 99 100.0
AL1G49310 Arabidopsis lyrata HOM05D007940 ORTHO05D010046 6.5e-40 167.2 92 90.2
AT1G31175 Arabidopsis thaliana HOM05D007940 ORTHO05D010046 2.1e-38 162.2 90 88.9
Carub.0001s2958 Capsella rubella HOM05D007940 ORTHO05D010046 6.1e-38 160.6 89 88.8
Thhalv10009859m.g Eutrema salsugineum HOM05D007940 ORTHO05D010046 2.3e-37 158.7 95 82.1
Sp1g27000 Schrenkiella parvula HOM05D007940 ORTHO05D010046 3.0e-37 158.3 89 87.6
A09p35060 Brassica napus HOM05D007940 ORTHO05D010046 4.9e-35 151.0 86 86.0
BraA09t39037Z Brassica rapa HOM05D007940 ORTHO05D010046 4.9e-35 151.0 86 86.0
BcaB07g32779 Brassica carinata HOM05D007940 ORTHO05D010046 1.1e-34 149.8 86 84.9
Aa31LG2G15120 Aethionema arabicum HOM05D007940 ORTHO05D010046 3.1e-34 148.3 87 82.8
BcaC05g27148 Brassica carinata HOM05D007940 ORTHO05D010046 2.7e-33 145.2 86 83.7
BcaC09g51575 Brassica carinata HOM05D007940 ORTHO05D010046 2.7e-33 145.2 86 83.7
BolC1t01151H Brassica oleracea HOM05D007940 ORTHO05D010046 2.7e-33 145.2 86 83.7
THA.LOC104798551 Tarenaya hassleriana HOM05D007940 ORTHO05D010046 6.1e-30 134.0 94 71.3
Atru.chr10.309 Acer truncatum HOM05D007940 ORTHO05D010046 2.4e-26 122.1 81 67.9
Sed0008509 Sechium edule HOM05D007940 ORTHO05D010046 2.4e-26 122.1 79 70.9
ClCG01G009440 Citrullus lanatus HOM05D007940 ORTHO05D010046 3.2e-26 121.7 79 72.2
QL11p017779 Quercus lobata HOM05D007940 ORTHO05D010046 7.0e-26 120.6 86 66.3
RcHm_v2.0_Chr5g0020061 Rosa chinensis HOM05D007940 ORTHO05D010046 7.0e-26 120.6 81 71.6
MELO3C021755.2 Cucumis melo HOM05D007940 ORTHO05D010046 3.5e-25 118.2 88 65.9
Prupe.4G111600 Prunus persica HOM05D007940 ORTHO05D010046 3.5e-25 118.2 91 63.7
FAN16G1222 Fragaria x ananassa HOM05D007940 ORTHO05D010046 7.8e-25 117.1 81 67.9
CSS0023427 Camellia sinensis var. sinensis HOM05D007940 ORTHO05D010046 2.3e-24 115.5 73 72.6
Lalb_Chr07g0188831 Lupinus albus HOM05D007940 ORTHO05D010046 2.3e-24 115.5 81 69.1
Sabra15G0137900 Salix brachista HOM05D007940 ORTHO05D010046 2.3e-24 115.5 84 64.3
Migut.M01978 Erythranthe guttata HOM05D007940 ORTHO05D010046 3.9e-24 114.8 91 61.5
SalBow6G6284 Salvia bowleyana HOM05D007940 ORTHO05D010046 6.6e-24 114.0 96 57.3
SalBow8G3130 Salvia bowleyana HOM05D007940 ORTHO05D010046 6.6e-24 114.0 96 57.3
Hma1.2p1_0040F.1_g025155 Hydrangea macrophylla HOM05D007940 ORTHO05D010046 8.6e-24 113.6 82 65.9
SGA_v2.0_scaffold298G47684 Striga asiatica HOM05D007940 ORTHO05D010046 8.6e-24 113.6 82 64.6
Nn7g38154 Nelumbo nucifera HOM05D007940 ORTHO05D010046 1.1e-23 113.2 79 67.1
TPR.G22024 Trifolium pratense HOM05D007940 ORTHO05D010046 1.1e-23 113.2 75 69.3
Oeu008726.1 Olea europaea HOM05D007940 ORTHO05D010046 1.5e-23 112.8 84 61.9
Psat1g156840 Pisum sativum HOM05D007940 ORTHO05D010046 1.5e-23 112.8 75 69.3
Potri.015G121500 Populus trichocarpa HOM05D007940 ORTHO05D010046 1.5e-23 112.8 81 65.4
Phvul.009G252500 Phaseolus vulgaris HOM05D007940 ORTHO05D010046 2.5e-23 112.1 81 61.7
Lsat_1_v5_gn_5_23140 Lactuca sativa HOM05D007940 ORTHO05D010046 3.3e-23 111.7 79 63.3
TWI38G0312 Tripterygium wilfordii HOM05D007940 ORTHO05D010046 4.3e-23 111.3 81 61.7
MD05G1252500 Malus domestica HOM05D007940 ORTHO05D010046 5.6e-23 110.9 84 63.1
Sc16g0011710 Simmondsia chinensis HOM05D007940 ORTHO05D010046 7.3e-23 110.5 79 65.8
Cfa019394 Carpinus fangiana HOM05D007940 ORTHO05D010046 9.5e-23 110.2 84 60.7
Ca_01891_v3 Cicer arietinum L. HOM05D007940 ORTHO05D010046 1.2e-22 109.8 89 60.7
Eucgr.D01043 Eucalyptus grandis HOM05D007940 ORTHO05D010046 1.6e-22 109.4 82 62.2
Cc09_g06150 Coffea canephora HOM05D007940 ORTHO05D010046 2.1e-22 109.0 94 58.5
DCAR_003782 Daucus carota HOM05D007940 ORTHO05D010046 2.8e-22 108.6 92 57.6
Duzib235G0199 Durio zibethinus HOM05D007940 ORTHO05D010046 2.8e-22 108.6 89 59.6
Glyma.15G146300 Glycine max HOM05D007940 ORTHO05D010046 2.8e-22 108.6 80 63.8
HanXRQChr04g0109371 Helianthus annuus HOM05D007940 ORTHO05D010046 2.8e-22 108.6 79 59.5
Medtr2g435250 Medicago truncatula HOM05D007940 ORTHO05D010046 3.6e-22 108.2 80 62.5
MD10G1233500 Malus domestica HOM05D007940 ORTHO05D010046 6.2e-22 107.5 81 63.0
FAN21G0368 Fragaria x ananassa HOM05D007940 ORTHO05D010046 8.0e-22 107.1 81 65.4
Manes.16G057400 Manihot esculenta HOM05D007940 ORTHO05D010046 8.0e-22 107.1 89 59.6
Ah.06g193510 Amaranthus hybridus HOM05D007940 ORTHO05D010046 1.4e-21 106.3 92 54.3
Manes.16G056500 Manihot esculenta HOM05D007940 ORTHO05D010046 1.4e-21 106.3 89 58.4
Thecc.06G142100 Theobroma cacao HOM05D007940 ORTHO05D010046 1.4e-21 106.3 80 62.5
Actinidia33707 Actinidia chinensis HOM05D007940 ORTHO05D010046 8.9e-21 103.6 79 60.8
EL10Ac4g10315 Beta vulgaris HOM05D007940 ORTHO05D010046 2.0e-20 102.4 81 61.7
Sopen11g010730 Solanum pennellii HOM05D007940 ORTHO05D010046 2.6e-20 102.1 81 60.5
Solyc11g020710.2 Solanum lycopersicum HOM05D007940 ORTHO05D010046 4.4e-20 101.3 81 60.5
Aqoxy3G00719 Aquilegia oxysepala HOM05D007940 ORTHO05D010046 9.8e-20 100.1 79 59.5
CANSAT35G1488 Cannabis sativa HOM05D007940 ORTHO05D010046 9.8e-20 100.1 84 59.5
HPP92_017565 Vanilla planifolia HOM05D007940 ORTHO05D010046 2.2e-19 99.0 85 58.8
Os07g0567500 Oryza sativa ssp. japonica HOM05D007940 ORTHO05D010046 3.5e-17 91.7 81 55.6
Zm00001eb107160 Zea mays HOM05D007940 ORTHO05D010046 1.0e-16 90.1 81 54.3
MBI02_g13338_MAGBIO Magnolia biondii HOM05D007940 ORTHO05D010046 1.3e-16 89.7 77 55.8
Ciclev10017318m.g Citrus clementina HOM05D007940 ORTHO05D010046 1.1e-15 86.7 76 56.6
COL.COLO4_30989 Corchorus olitorius HOM05D007940 ORTHO05D010046 3.3e-15 85.1 93 44.1
CsaV3_1G046330 Cucumis sativus L. HOM05D007940 ORTHO05D010046 9.5e-15 83.6 48 72.9
Gohir.D05G147600 Gossypium hirsutum HOM05D007940 ORTHO05D010046 1.8e-13 79.3 79 49.4
PSO675G1966 Papaver somniferum HOM05D007940 ORTHO05D010046 1.8e-13 79.3 54 63.0
Gorai.009G151700 Gossypium raimondii HOM05D007940 ORTHO05D010046 2.6e-12 75.5 88 44.3
Gohir.D05G147732 Gossypium hirsutum HOM05D007940 ORTHO05D010046 5.8e-12 74.3 88 43.2
TAR624G1282 Trochodendron aralioides HOM05D007940 ORTHO05D010046 1.2e-09 66.6 55 54.5
Mapoly0019s0110 Marchantia polymorpha HOM05D007940 ORTHO05D010046 2.3e-08 62.4 82 40.2
CBR_g28534 Chara braunii HOM05D007940 ORTHO05D010046 4.3e-07 58.2 87 37.9
SMO347G0336 Selaginella moellendorffii HOM05D007940 ORTHO05D010046 4.3e-07 58.2 79 39.2
FAN20G1268 Fragaria x ananassa HOM05D007940 ORTHO05D010046 4.7e-06 54.7 35 68.6
FAN03G3294 Fragaria x ananassa HOM05D004346 ORTHO05D005153 8.1e-06 53.9 35 68.6
FAN12G0891 Fragaria x ananassa HOM05D007940 ORTHO05D010046 8.1e-06 53.9 36 63.9
FAN24G2461 Fragaria x ananassa HOM05D000188 ORTHO05D000362 8.1e-06 53.9 36 63.9
FAN27G1447 Fragaria x ananassa HOM05D008022 ORTHO05D010147 8.1e-06 53.9 36 63.9


User provided reference genes

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