Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR030450 Cardamine hirsuta HOM05D000171 ORTHO05D000101 1.4e-37 159.1 79 100.0
CARHR030870 Cardamine hirsuta HOM05D000171 ORTHO05D000101 2.6e-15 85.1 93 52.7
AL1G47320 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 2.2e-14 82.0 93 51.6
CARHR031540 Cardamine hirsuta HOM05D000171 ORTHO05D000101 2.9e-14 81.6 94 50.0
Thhalv10009370m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 8.4e-14 80.1 79 60.8
CARHR030460 Cardamine hirsuta HOM05D000171 ORTHO05D000101 1.9e-13 79.0 89 49.4
AT5G42430 Arabidopsis thaliana HOM05D000171 ORTHO05D000101 4.2e-13 77.8 93 48.4
AL4G14930 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 5.4e-13 77.4 86 51.2
AL1G45530 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 7.1e-13 77.0 94 50.0
AL3G45420 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 7.1e-13 77.0 91 53.8
CARHR030420 Cardamine hirsuta HOM05D000171 ORTHO05D000101 7.1e-13 77.0 93 47.3
CARHR113190 Cardamine hirsuta HOM05D000171 ORTHO05D000101 7.1e-13 77.0 87 49.4
AT1G33020 Arabidopsis thaliana HOM05D000171 ORTHO05D000101 9.3e-13 76.6 88 51.1
AL1G45550 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 2.1e-12 75.5 90 50.0
AL1G46280 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 2.1e-12 75.5 93 48.4
AL1G45580 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 2.7e-12 75.1 90 48.9
Thhalv10009829m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 2.7e-12 75.1 92 48.9
Thhalv10009762m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 7.9e-12 73.6 92 50.0
CARHR030890 Cardamine hirsuta HOM05D000171 ORTHO05D000101 1.3e-11 72.8 93 49.5
Thhalv10009318m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 1.3e-11 72.8 89 49.4
Thhalv10009617m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 1.3e-11 72.8 89 49.4
AL1G45610 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 1.8e-11 72.4 88 48.9
AL1G45540 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 2.3e-11 72.0 93 47.3
Carub.0001s3225 Capsella rubella HOM05D000171 ORTHO05D000101 2.3e-11 72.0 92 47.8
Carub.0001s3228 Capsella rubella HOM05D000171 ORTHO05D000101 2.3e-11 72.0 93 47.3
Carub.0001s3230 Capsella rubella HOM05D000171 ORTHO05D000101 2.3e-11 72.0 92 47.8
CARHR213730 Cardamine hirsuta HOM05D000171 ORTHO05D000101 3.0e-11 71.6 98 49.0
AT1G30920 Arabidopsis thaliana HOM05D000171 ORTHO05D000101 5.1e-11 70.9 92 45.7
AT1G31090 Arabidopsis thaliana HOM05D000171 ORTHO05D000101 5.1e-11 70.9 95 48.4
AL1G45350 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 6.7e-11 70.5 96 46.9
AL1G45230 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 8.7e-11 70.1 93 45.2
Thhalv10012264m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 8.7e-11 70.1 97 44.3
AL4G35160 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 1.1e-10 69.7 89 47.2
AT1G67130 Arabidopsis thaliana HOM05D000171 ORTHO05D000101 1.5e-10 69.3 93 44.1
AL1G45590 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 1.9e-10 68.9 93 46.2
Thhalv10009603m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 1.9e-10 68.9 95 44.2
AL1G45470 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 2.5e-10 68.6 94 44.7
CARHR112760 Cardamine hirsuta HOM05D000171 ORTHO05D000101 2.5e-10 68.6 90 46.7
Thhalv10009377m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 4.3e-10 67.8 88 47.7
AL1G46260 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 5.6e-10 67.4 93 44.1
CARHR031230 Cardamine hirsuta HOM05D000171 ORTHO05D000101 5.6e-10 67.4 93 43.0
Thhalv10009854m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 5.6e-10 67.4 64 57.8
A05p07370 Brassica napus HOM05D000171 ORTHO05D000101 7.4e-10 67.0 94 47.9
C04p08820 Brassica napus HOM05D000171 ORTHO05D000101 7.4e-10 67.0 98 45.9
BraA05t19702Z Brassica rapa HOM05D000171 ORTHO05D000101 7.4e-10 67.0 94 47.9
CARHR062310 Cardamine hirsuta HOM05D000171 ORTHO05D000101 9.6e-10 66.6 90 48.9
Thhalv10009665m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 9.6e-10 66.6 96 44.8
AL1G45570 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 1.3e-09 66.2 93 45.2
AL1G45600 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 1.3e-09 66.2 93 45.2
A05p07390 Brassica napus HOM05D000171 ORTHO05D000101 1.3e-09 66.2 100 47.0
BraA05t19705Z Brassica rapa HOM05D000171 ORTHO05D000101 1.3e-09 66.2 100 47.0
Thhalv10009572m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 1.6e-09 65.9 89 44.9
Thhalv10009823m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 1.6e-09 65.9 54 64.8
AL1G46270 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 2.1e-09 65.5 93 41.9
Thhalv10019539m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 2.1e-09 65.5 96 44.8
AT1G31080 Arabidopsis thaliana HOM05D000171 ORTHO05D000101 2.8e-09 65.1 93 44.1
BolC4t22474H Brassica oleracea HOM05D000171 ORTHO05D000101 2.8e-09 65.1 98 44.9
Thhalv10009628m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 3.7e-09 64.7 88 46.6
Thhalv10009932m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 3.7e-09 64.7 94 43.6
AL5G23680 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 4.8e-09 64.3 93 40.9
BcaC02g12025 Brassica carinata HOM05D000171 ORTHO05D000101 4.8e-09 64.3 98 45.9
Thhalv10012275m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 4.8e-09 64.3 98 45.9
Thhalv10015343m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 4.8e-09 64.3 97 42.3
AL1G45490 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 6.2e-09 63.9 95 44.2
C04p08810 Brassica napus HOM05D000171 ORTHO05D000101 6.2e-09 63.9 94 47.9
Thhalv10009451m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 6.2e-09 63.9 96 44.8
AL1G45240 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 8.1e-09 63.5 94 44.7
Thhalv10015881m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 8.1e-09 63.5 92 40.2
Carub.0004s0867 Capsella rubella HOM05D000171 ORTHO05D000101 1.1e-08 63.2 97 41.2
CARHR126510 Cardamine hirsuta HOM05D000171 ORTHO05D000101 1.1e-08 63.2 100 43.0
Thhalv10009646m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 1.1e-08 63.2 88 45.5
Thhalv10012379m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 1.1e-08 63.2 95 48.4
AL1G45520 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 1.4e-08 62.8 95 44.2
BraA05t19704Z Brassica rapa HOM05D000171 ORTHO05D000101 1.4e-08 62.8 98 44.9
Thhalv10009341m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 1.4e-08 62.8 87 46.0
AL1G45480 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 1.8e-08 62.4 95 43.2
Thhalv10015706m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 1.8e-08 62.4 93 43.0
BcaB02g09153 Brassica carinata HOM05D000171 ORTHO05D000101 2.4e-08 62.0 96 45.8
BcaB02g09154 Brassica carinata HOM05D000171 ORTHO05D000101 2.4e-08 62.0 95 45.3
Carub.0001s4254 Capsella rubella HOM05D000171 ORTHO05D000101 2.4e-08 62.0 85 42.4
Carub.0001s3227 Capsella rubella HOM05D000171 ORTHO05D000101 3.1e-08 61.6 91 42.9
Carub.0008s0811 Capsella rubella HOM05D000171 ORTHO05D000101 3.1e-08 61.6 91 45.1
AL1G45510 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 4.0e-08 61.2 87 47.1
AL4G16470 Arabidopsis lyrata HOM05D000171 ORTHO05D031361 4.0e-08 61.2 91 41.8
Carub.0001s3050 Capsella rubella HOM05D000171 ORTHO05D000101 4.0e-08 61.2 45 66.7
Thhalv10009314m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 5.3e-08 60.8 47 63.8
AT3G57590 Arabidopsis thaliana HOM05D000171 ORTHO05D000101 6.9e-08 60.5 79 46.8
Thhalv10009588m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 6.9e-08 60.5 92 46.7
C03p84110 Brassica napus HOM05D000171 ORTHO05D000101 9.0e-08 60.1 90 43.3
BolC3t20689H Brassica oleracea HOM05D000171 ORTHO05D000101 9.0e-08 60.1 90 43.3
Carub.0001s3224 Capsella rubella HOM05D000171 ORTHO05D000101 9.0e-08 60.1 93 40.9
Carub.0001s3226 Capsella rubella HOM05D000171 ORTHO05D000101 9.0e-08 60.1 95 43.2
Thhalv10007859m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 9.0e-08 60.1 96 42.7
AL1G45270 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 1.2e-07 59.7 84 46.4
AL1G45280 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 1.2e-07 59.7 82 47.6
AL5G39170 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 1.2e-07 59.7 86 44.2
BcaC02g07927 Brassica carinata HOM05D000171 ORTHO05D000101 1.2e-07 59.7 83 45.8
BraA04t18004Z Brassica rapa HOM05D000171 ORTHO05D000101 1.2e-07 59.7 83 45.8
Thhalv10009427m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 1.2e-07 59.7 85 40.0
Sp1g27310 Schrenkiella parvula HOM05D000171 ORTHO05D000101 1.2e-07 59.7 95 45.3
C04p61870 Brassica napus HOM05D000171 ORTHO05D000101 1.5e-07 59.3 83 45.8
Carub.0004s0543 Capsella rubella HOM05D000171 ORTHO05D000101 1.5e-07 59.3 85 40.0
CARHR219450 Cardamine hirsuta HOM05D000171 ORTHO05D000101 1.5e-07 59.3 82 42.7
Thhalv10009883m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 1.5e-07 59.3 87 43.7
AT2G31470 Arabidopsis thaliana HOM05D000171 ORTHO05D000101 2.0e-07 58.9 94 40.4
Thhalv10012093m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 2.0e-07 58.9 98 42.9
Carub.0004s0542 Capsella rubella HOM05D000171 ORTHO05D000101 2.6e-07 58.5 91 38.5
Thhalv10009326m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 2.6e-07 58.5 86 44.2
BolC4t27668H Brassica oleracea HOM05D000171 ORTHO05D000101 3.4e-07 58.2 83 44.6
Carub.0008s0812 Capsella rubella HOM05D000171 ORTHO05D000101 3.4e-07 58.2 91 44.0
Carub.0001s2929 Capsella rubella HOM05D000171 ORTHO05D000101 4.5e-07 57.8 86 46.5
Thhalv10011962m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 4.5e-07 57.8 94 45.7
Thhalv10012153m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 4.5e-07 57.8 85 38.8
Thhalv10019504m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 4.5e-07 57.8 79 45.6
Aa31LG8G12630 Aethionema arabicum HOM05D000171 ORTHO05D000101 5.8e-07 57.4 99 41.4
Thhalv10012082m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 5.8e-07 57.4 98 41.8
AL1G45300 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 7.6e-07 57.0 81 44.4
AL5G12460 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 7.6e-07 57.0 96 43.8
Thhalv10009523m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 7.6e-07 57.0 84 47.6
AL1G45290 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 1.3e-06 56.2 84 44.0
AT1G30925 Arabidopsis thaliana HOM05D000171 ORTHO05D000101 1.3e-06 56.2 46 65.2
BraA08t33629Z Brassica rapa HOM05D000171 ORTHO05D000101 1.3e-06 56.2 78 47.4
Carub.0001s2927 Capsella rubella HOM05D000171 ORTHO05D000101 1.3e-06 56.2 95 43.2
Carub.0001s2930 Capsella rubella HOM05D000171 ORTHO05D000101 1.3e-06 56.2 92 45.7
Carub.0001s4256 Capsella rubella HOM05D000171 ORTHO05D000101 1.3e-06 56.2 85 38.8
Thhalv10012205m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 1.3e-06 56.2 96 43.8
AT5G65850 Arabidopsis thaliana HOM05D000171 ORTHO05D000101 1.7e-06 55.8 92 40.2
BcaC02g07953 Brassica carinata HOM05D000171 ORTHO05D000101 1.7e-06 55.8 104 36.5
C04p61570 Brassica napus HOM05D000171 ORTHO05D000101 1.7e-06 55.8 104 36.5
C07p52590 Brassica napus HOM05D002608 ORTHO05D000101 1.7e-06 55.8 95 46.3
BolC7t45757H Brassica oleracea HOM05D000171 ORTHO05D000101 1.7e-06 55.8 95 46.3
Thhalv10012346m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 1.7e-06 55.8 98 41.8
AT1G60370 Arabidopsis thaliana HOM05D000171 ORTHO05D000101 2.2e-06 55.5 92 43.5
AT5G52620 Arabidopsis thaliana HOM05D000171 ORTHO05D000101 2.2e-06 55.5 94 37.2
CARHR265610 Cardamine hirsuta HOM05D000171 ORTHO05D000101 2.2e-06 55.5 93 38.7
AT1G53370 Arabidopsis thaliana HOM05D000171 ORTHO05D000101 2.9e-06 55.1 88 40.9
AT2G15640 Arabidopsis thaliana HOM05D000171 ORTHO05D000101 2.9e-06 55.1 96 41.7
AT2G16450 Arabidopsis thaliana HOM05D000171 ORTHO05D000101 2.9e-06 55.1 96 43.8
A03p54230 Brassica napus HOM05D000171 ORTHO05D000101 2.9e-06 55.1 95 45.3
C05p30270 Brassica napus HOM05D000171 ORTHO05D000101 2.9e-06 55.1 80 47.5
BraA03t14484Z Brassica rapa HOM05D000171 ORTHO05D000101 2.9e-06 55.1 95 45.3
BraA05t21376Z Brassica rapa HOM05D000171 ORTHO05D000101 2.9e-06 55.1 87 42.5
Aa31LG6G12100 Aethionema arabicum HOM05D000171 ORTHO05D000101 3.8e-06 54.7 89 42.7
AL1G62520 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 3.8e-06 54.7 87 39.1
AT1G33010 Arabidopsis thaliana HOM05D000171 ORTHO05D000101 3.8e-06 54.7 76 43.4
A04p24670 Brassica napus HOM05D000171 ORTHO05D000101 3.8e-06 54.7 90 37.8
AL5G12490 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 4.9e-06 54.3 54 55.6
AL8G43560 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 4.9e-06 54.3 92 39.1
BcaB01g03998 Brassica carinata HOM05D000171 ORTHO05D000101 4.9e-06 54.3 94 35.1
BolC4t27670H Brassica oleracea HOM05D000171 ORTHO05D000101 4.9e-06 54.3 93 38.7
Carub.0001s4431 Capsella rubella HOM05D000171 ORTHO05D000101 4.9e-06 54.3 79 40.5
Carub.0002s0685 Capsella rubella HOM05D000171 ORTHO05D000101 4.9e-06 54.3 96 38.5
CARHR042940 Cardamine hirsuta HOM05D000171 ORTHO05D000101 4.9e-06 54.3 84 40.5
AL1G61860 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 6.4e-06 53.9 85 40.0
AL5G38280 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 6.4e-06 53.9 90 40.0
C04p17930 Brassica napus HOM05D000171 ORTHO05D000101 6.4e-06 53.9 84 41.7
BolC4t23340H Brassica oleracea HOM05D000171 ORTHO05D000101 6.4e-06 53.9 84 41.7
Thhalv10006464m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 6.4e-06 53.9 86 40.7
AL9U11000 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 8.4e-06 53.5 88 42.0
C05p38740 Brassica napus HOM05D000171 ORTHO05D000101 8.4e-06 53.5 86 43.0
BolC5t32614H Brassica oleracea HOM05D000171 ORTHO05D000101 8.4e-06 53.5 86 43.0
Carub.0001s2932 Capsella rubella HOM05D000171 ORTHO05D000101 8.4e-06 53.5 83 45.8
CARHR167830 Cardamine hirsuta HOM05D000171 ORTHO05D000101 8.4e-06 53.5 95 38.9


User provided reference genes

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