Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR030370 Cardamine hirsuta HOM05D006797 ORTHO05D007696 1.8e-55 219.2 122 100.0
BcaB07g32754 Brassica carinata HOM05D006797 ORTHO05D007696 1.1e-44 183.3 120 87.5
BolC7t41975H Brassica oleracea HOM05D006797 ORTHO05D007696 4.1e-44 181.4 120 85.8
Carub.0001s2922 Capsella rubella HOM05D006797 ORTHO05D007696 4.1e-44 181.4 122 86.9
Sp1g26780 Schrenkiella parvula HOM05D006797 ORTHO05D007696 5.4e-44 181.0 120 86.7
C07p14730 Brassica napus HOM05D006797 ORTHO05D007696 9.2e-44 180.3 120 85.0
Thhalv10009126m.g Eutrema salsugineum HOM05D006797 ORTHO05D007696 1.2e-43 179.9 120 86.7
AL1G45170 Arabidopsis lyrata HOM05D006797 ORTHO05D007696 2.1e-43 179.1 122 83.6
AT1G30880 Arabidopsis thaliana HOM05D006797 ORTHO05D007696 4.6e-43 177.9 122 84.4
BraA08t33088Z Brassica rapa HOM05D006797 ORTHO05D007696 4.6e-43 177.9 120 85.0
BcaB04g18200 Brassica carinata HOM05D006797 ORTHO05D007696 3.0e-42 175.3 121 83.5
BcaC05g27127 Brassica carinata HOM05D006797 ORTHO05D007696 8.6e-42 173.7 120 82.5
C05p30120 Brassica napus HOM05D006797 ORTHO05D007696 8.6e-42 173.7 120 82.5
A08p10910 Brassica napus HOM05D006797 ORTHO05D007696 1.2e-40 169.9 120 84.2
BcaC07g37796 Brassica carinata HOM05D006797 ORTHO05D007696 2.8e-40 168.7 120 83.3
A07p09570 Brassica napus HOM05D006797 ORTHO05D007696 3.6e-40 168.3 120 83.3
BraA07t28751Z Brassica rapa HOM05D006797 ORTHO05D007696 3.6e-40 168.3 120 83.3
BolC8t48187H Brassica oleracea HOM05D006797 ORTHO05D007696 4.0e-39 164.9 120 80.8
BolC5t31749H Brassica oleracea HOM05D006797 ORTHO05D007696 2.0e-38 162.5 126 77.0
Aa31LG6G12300 Aethionema arabicum HOM05D006797 ORTHO05D007696 1.7e-37 159.5 120 77.5
A09p35270 Brassica napus HOM05D006797 ORTHO05D007696 2.9e-37 158.7 120 76.7
BraA09t39054Z Brassica rapa HOM05D006797 ORTHO05D007696 8.3e-37 157.1 120 75.0
THA.LOC104812696 Tarenaya hassleriana HOM05D006797 ORTHO05D007696 2.1e-32 142.5 124 67.7
BolC9t58594H Brassica oleracea HOM05D006797 ORTHO05D007696 7.9e-19 97.4 75 76.0
PGR042G0784 Punica granatum HOM05D006797 ORTHO05D007696 3.9e-18 95.1 124 54.8
BcaC02g10358 Brassica carinata HOM05D006797 ORTHO05D007696 1.5e-17 93.2 80 70.0
C04p29800 Brassica napus HOM05D006797 ORTHO05D007696 1.9e-17 92.8 92 68.5
Nitab4.5_0003902g0030 Nicotiana tabacum HOM05D006797 ORTHO05D007696 1.9e-17 92.8 120 54.2
Nitab4.5_0000632g0020 Nicotiana tabacum HOM05D006797 ORTHO05D007696 2.5e-17 92.4 120 53.3
ECA248G3234 Erigeron canadensis HOM05D006797 ORTHO05D007696 4.3e-17 91.7 119 52.9
CAN.G809.30 Capsicum annuum HOM05D006797 ORTHO05D007696 1.3e-16 90.1 120 52.5
Solyc02g082020.3 Solanum lycopersicum HOM05D006797 ORTHO05D007696 6.2e-16 87.8 123 52.8
Sopen02g026660 Solanum pennellii HOM05D006797 ORTHO05D007696 1.1e-15 87.0 123 52.0
HanXRQChr12g0377351 Helianthus annuus HOM05D006797 ORTHO05D007696 1.4e-15 86.7 120 55.0
TWI38G0311 Tripterygium wilfordii HOM05D006797 ORTHO05D007696 1.4e-15 86.7 122 55.7
Peaxi162Scf00036g02019 Petunia axillaris HOM05D006797 ORTHO05D007696 3.1e-15 85.5 120 51.7
Manes.03G071800 Manihot esculenta HOM05D006797 ORTHO05D007696 4.0e-15 85.1 120 52.5
PGSC0003DMG400007337 Solanum tuberosum HOM05D006797 ORTHO05D007696 5.3e-15 84.7 123 51.2
Gorai.010G130400 Gossypium raimondii HOM05D006797 ORTHO05D007696 6.9e-15 84.3 129 53.5
MSTRG.8842 Avicennia marina HOM05D006797 ORTHO05D007696 9.0e-15 84.0 122 51.6
Ciclev10017227m.g Citrus clementina HOM05D006797 ORTHO05D007696 9.0e-15 84.0 118 55.1
arahy.Tifrunner.gnm1.ann1.30I9D2 Arachis hypogaea HOM05D006797 ORTHO05D007696 1.5e-14 83.2 118 56.8
arahy.Tifrunner.gnm1.ann1.3X9X11 Arachis hypogaea HOM05D006797 ORTHO05D007696 1.5e-14 83.2 118 56.8
Cc09_g04790 Coffea canephora HOM05D006797 ORTHO05D007696 1.5e-14 83.2 121 52.1
Gohir.A06G110200 Gossypium hirsutum HOM05D006797 ORTHO05D007696 1.5e-14 83.2 129 51.9
Medtr4g094782 Medicago truncatula HOM05D006797 ORTHO05D007696 1.5e-14 83.2 116 56.0
SGA_v2.0_scaffold44G16576 Striga asiatica HOM05D001006 ORTHO05D000868 2.6e-14 82.4 122 53.3
Gohir.D06G114100 Gossypium hirsutum HOM05D006797 ORTHO05D007696 3.4e-14 82.0 129 52.7
Lsat_1_v5_gn_3_103300 Lactuca sativa HOM05D006797 ORTHO05D007696 3.4e-14 82.0 112 53.6
Cpa.g.sc30.90 Carica papaya HOM05D006797 ORTHO05D007696 4.5e-14 81.6 111 56.8
CiPaw.10G107100 Carya illinoinensis HOM05D006797 ORTHO05D007696 4.5e-14 81.6 118 55.1
Sed0011432 Sechium edule HOM05D006797 ORTHO05D007696 7.6e-14 80.9 124 50.8
Migut.F00519 Erythranthe guttata HOM05D006797 ORTHO05D007696 1.3e-13 80.1 121 52.1
RcHm_v2.0_Chr5g0021541 Rosa chinensis HOM05D006797 ORTHO05D007696 2.2e-13 79.3 118 50.0
Duzib211G0055 Durio zibethinus HOM05D006797 ORTHO05D007696 4.9e-13 78.2 129 51.2
Sc24g0002860 Simmondsia chinensis HOM05D006797 ORTHO05D007696 4.9e-13 78.2 124 54.8
MD10G1226000 Malus domestica HOM05D006797 ORTHO05D007696 6.4e-13 77.8 118 51.7
SGA_v2.0_scaffold60G20810 Striga asiatica HOM05D006797 ORTHO05D007696 6.4e-13 77.8 122 48.4
QL11p011767 Quercus lobata HOM05D006797 ORTHO05D007696 8.4e-13 77.4 121 49.6
Prupe.4G119300 Prunus persica HOM05D006797 ORTHO05D007696 1.1e-12 77.0 125 48.8
TPR.G27392 Trifolium pratense HOM05D006797 ORTHO05D007696 1.4e-12 76.6 118 53.4
Psat7g087040 Pisum sativum HOM05D006797 ORTHO05D007696 1.9e-12 76.3 116 54.3
ClCG01G025860 Citrullus lanatus HOM05D006797 ORTHO05D007696 2.4e-12 75.9 126 50.0
Lj4g0013366 Lotus japonicus HOM05D006797 ORTHO05D007696 2.4e-12 75.9 106 56.6
MELO3C007002.2 Cucumis melo HOM05D006797 ORTHO05D007696 3.2e-12 75.5 124 48.4
Oeu036765.2 Olea europaea HOM05D006797 ORTHO05D007696 3.2e-12 75.5 127 47.2
PSO541G4265 Papaver somniferum HOM05D006797 ORTHO05D007696 4.2e-12 75.1 121 47.1
PSO675G1942 Papaver somniferum HOM05D006797 ORTHO05D007696 9.3e-12 73.9 121 46.3
Lalb_Chr07g0188191 Lupinus albus HOM05D006797 ORTHO05D007696 1.6e-11 73.2 125 50.4
Ca_18220_v3 Cicer arietinum L. HOM05D006797 ORTHO05D007696 2.7e-11 72.4 126 52.4
Glyma.05G134500 Glycine max HOM05D006797 ORTHO05D007696 6.0e-11 71.2 124 50.0
Rhsim13G0134800 Rhododendron simsii HOM05D006797 ORTHO05D007696 6.0e-11 71.2 133 45.9
Aqoxy3G03581 Aquilegia oxysepala HOM05D006409 ORTHO05D008250 7.9e-11 70.9 125 45.6
Glyma.08G089600 Glycine max HOM05D006797 ORTHO05D007696 7.9e-11 70.9 124 51.6
GSVIVG01012170001 Vitis vinifera HOM05D006797 ORTHO05D007696 7.9e-11 70.9 118 50.8
CsaV3_6G053080 Cucumis sativus L. HOM05D006797 ORTHO05D007696 1.0e-10 70.5 127 46.5
Phvul.002G187600 Phaseolus vulgaris HOM05D006797 ORTHO05D007696 1.0e-10 70.5 124 49.2
Atru.chr10.261 Acer truncatum HOM05D006797 ORTHO05D007696 1.3e-10 70.1 125 46.4
CANSAT35G2044 Cannabis sativa HOM05D006797 ORTHO05D007696 1.8e-10 69.7 115 49.6
Potri.003G155400 Populus trichocarpa HOM05D006797 ORTHO05D007696 1.8e-10 69.7 121 45.5
CSS0049260 Camellia sinensis var. sinensis HOM05D006797 ORTHO05D007696 3.0e-10 68.9 128 47.7
Hma1.2p1_1220F.1_g268030 Hydrangea macrophylla HOM05D006797 ORTHO05D007696 5.1e-10 68.2 125 48.0
Ah.15g091850 Amaranthus hybridus HOM05D006797 ORTHO05D007696 1.9e-09 66.2 124 45.2
TAR626G0010 Trochodendron aralioides HOM05D006797 ORTHO05D007696 1.9e-09 66.2 123 49.6
EL10Ac7g17249 Beta vulgaris HOM05D006797 ORTHO05D007696 4.3e-09 65.1 123 45.5
AUR62042807 Chenopodium quinoa HOM05D006797 ORTHO05D007696 9.6e-09 63.9 117 42.7
SalBow3G3973 Salvia bowleyana HOM05D006797 ORTHO05D007696 9.6e-09 63.9 120 45.8
Zm00001eb071100 Zea mays HOM05D006797 ORTHO05D007696 1.6e-08 63.2 122 45.1
COL.COLO4_25039 Corchorus olitorius HOM05D006797 ORTHO05D007696 3.7e-08 62.0 105 52.4
VMungo0251G2933 Vigna mungo HOM05D006797 ORTHO05D007696 3.7e-08 62.0 114 52.6
FAN16G2513 Fragaria x ananassa HOM05D006797 ORTHO05D007696 6.2e-08 61.2 118 46.6
Hund23985 Selenicereus undatus HOM05D006797 ORTHO05D007696 8.1e-08 60.8 106 50.9
Dinv02379 Davidia involucrata HOM05D006797 ORTHO05D007696 3.1e-07 58.9 109 50.5
Os04g0611300 Oryza sativa ssp. japonica HOM05D006797 ORTHO05D007696 4.0e-07 58.5 122 45.1
Zm00001eb430680 Zea mays HOM05D006797 ORTHO05D007696 5.3e-07 58.2 122 43.4
DCAR_001265 Daucus carota HOM05D006797 ORTHO05D007696 6.9e-07 57.8 104 50.0
FAN21G4013 Fragaria x ananassa HOM05D006797 ORTHO05D007696 6.9e-07 57.8 118 44.9
FvH4_3g13200 Fragaria vesca HOM05D006797 ORTHO05D007696 9.0e-07 57.4 117 42.7
FAN11G3985 Fragaria x ananassa HOM05D006797 ORTHO05D007696 9.0e-07 57.4 117 42.7
FAN25G1182 Fragaria x ananassa HOM05D006797 ORTHO05D007696 9.0e-07 57.4 118 44.9
Dinv03172 Davidia involucrata HOM05D006797 ORTHO05D007696 1.2e-06 57.0 126 46.0
CDE05G1867 Ceratophyllum demersum HOM05D006797 ORTHO05D007696 1.5e-06 56.6 125 44.8
ATR0763G022 Amborella trichopoda HOM05D006797 ORTHO05D007696 2.0e-06 56.2 113 43.4


User provided reference genes

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