Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR029040 Cardamine hirsuta HOM05D004993 ORTHO05D008532 3.0e-57 224.9 111 100.0
Carub.0001s2791 Capsella rubella HOM05D004993 ORTHO05D008532 1.2e-26 123.2 103 68.0
CARHR029050 Cardamine hirsuta HOM05D004993 ORTHO05D008532 1.6e-26 122.9 103 68.0
AL1G43530 Arabidopsis lyrata HOM05D004993 ORTHO05D008532 6.0e-26 120.9 103 66.0
BcaC01g00125 Brassica carinata HOM05D004993 ORTHO05D008532 6.0e-26 120.9 99 67.7
AT1G29700 Arabidopsis thaliana HOM05D004993 ORTHO05D008532 7.9e-26 120.6 103 65.0
BraA08t34448Z Brassica rapa HOM05D004993 ORTHO05D008532 1.3e-25 119.8 99 66.7
C03p76040 Brassica napus HOM05D004993 ORTHO05D008532 3.0e-25 118.6 99 66.7
Sp1g25580 Schrenkiella parvula HOM05D004993 ORTHO05D008532 3.0e-25 118.6 103 64.1
BolC3t19860H Brassica oleracea HOM05D004993 ORTHO05D008532 3.9e-25 118.2 99 65.7
A08p24930 Brassica napus HOM05D004993 ORTHO05D008532 6.7e-25 117.5 99 65.7
Thhalv10009499m.g Eutrema salsugineum HOM05D004993 ORTHO05D008532 8.7e-25 117.1 99 66.7
BcaB03g12171 Brassica carinata HOM05D004993 ORTHO05D008532 1.9e-24 115.9 99 65.7
Aa31LG6G5980 Aethionema arabicum HOM05D004993 ORTHO05D008532 2.6e-21 105.5 99 60.6
THA.LOC104808209 Tarenaya hassleriana HOM05D004993 ORTHO05D008532 1.6e-18 96.3 99 52.5
vmacro01368 Vaccinium macrocarpon HOM05D004993 ORTHO05D008532 4.6e-18 94.7 99 50.5
Hma1.2p1_0862F.1_g229960 Hydrangea macrophylla HOM05D004993 ORTHO05D008532 2.3e-17 92.4 100 51.0
Ca_20419_v3 Cicer arietinum L. HOM05D004993 ORTHO05D008532 5.1e-17 91.3 100 51.0
Hund05759 Selenicereus undatus HOM05D000924 ORTHO05D001209 5.1e-17 91.3 99 53.5
Atru.chr11.1340 Acer truncatum HOM05D004993 ORTHO05D008532 6.7e-17 90.9 100 49.0
Hma1.2p1_0862F.1_g229950 Hydrangea macrophylla HOM05D004993 ORTHO05D008532 6.7e-17 90.9 99 50.5
Lsat_1_v5_gn_4_20101 Lactuca sativa HOM05D004993 ORTHO05D008532 8.7e-17 90.5 99 50.5
RhsimUnG0136600 Rhododendron simsii HOM05D004993 ORTHO05D008532 1.1e-16 90.1 99 49.5
Lj3A1018T65 Lonicera japonica HOM05D004993 ORTHO05D008532 1.5e-16 89.7 99 48.5
Thecc.02G359900 Theobroma cacao HOM05D004993 ORTHO05D008532 1.5e-16 89.7 99 46.5
Dinv16501 Davidia involucrata HOM05D004993 ORTHO05D008532 1.9e-16 89.4 100 47.0
arahy.Tifrunner.gnm1.ann1.5ZE4QE Arachis hypogaea HOM05D004993 ORTHO05D008532 2.5e-16 89.0 99 48.5
arahy.Tifrunner.gnm1.ann1.VJ59XU Arachis hypogaea HOM05D004993 ORTHO05D008532 2.5e-16 89.0 99 48.5
CANSAT64G2606 Cannabis sativa HOM05D004993 ORTHO05D008532 2.5e-16 89.0 99 48.5
FvH4_4g27971 Fragaria vesca HOM05D004993 ORTHO05D008532 2.5e-16 89.0 99 48.5
Glyma.02G098700 Glycine max HOM05D004993 ORTHO05D008532 2.5e-16 89.0 103 48.5
Gohir.D12G173500 Gossypium hirsutum HOM05D004993 ORTHO05D008532 2.5e-16 89.0 99 48.5
Solyc03g111700.3 Solanum lycopersicum HOM05D004993 ORTHO05D008532 2.5e-16 89.0 99 50.5
Gohir.D12G172900 Gossypium hirsutum HOM05D004993 ORTHO05D008532 3.3e-16 88.6 99 48.5
Gorai.008G185400 Gossypium raimondii HOM05D004993 ORTHO05D008532 3.3e-16 88.6 99 48.5
Lalb_Chr17g0341941 Lupinus albus HOM05D004993 ORTHO05D008532 3.3e-16 88.6 99 48.5
QL01p044817 Quercus lobata HOM05D004993 ORTHO05D008532 3.3e-16 88.6 99 49.5
Cfa018620 Carpinus fangiana HOM05D004993 ORTHO05D008532 4.3e-16 88.2 99 48.5
FAN07G2608 Fragaria x ananassa HOM05D004993 ORTHO05D008532 4.3e-16 88.2 99 48.5
FAN17G0685 Fragaria x ananassa HOM05D004993 ORTHO05D008532 4.3e-16 88.2 99 48.5
Gorai.008G186000 Gossypium raimondii HOM05D004993 ORTHO05D008532 4.3e-16 88.2 99 48.5
Lj2g0001269 Lotus japonicus HOM05D004993 ORTHO05D008532 4.3e-16 88.2 99 48.5
Manes.14G098500 Manihot esculenta HOM05D004993 ORTHO05D008532 4.3e-16 88.2 99 48.5
Sc04g0006640 Simmondsia chinensis HOM05D004993 ORTHO05D008532 4.3e-16 88.2 99 52.5
Sopen03g030820 Solanum pennellii HOM05D004993 ORTHO05D008532 4.3e-16 88.2 99 49.5
TPR.G38312 Trifolium pratense HOM05D004993 ORTHO05D008532 4.3e-16 88.2 99 50.5
TWI31G0395 Tripterygium wilfordii HOM05D004993 ORTHO05D008532 4.3e-16 88.2 99 49.5
Gohir.A12G170200 Gossypium hirsutum HOM05D004993 ORTHO05D008532 5.7e-16 87.8 103 46.6
PSO063G3032 Papaver somniferum HOM05D004993 ORTHO05D008532 5.7e-16 87.8 99 48.5
Phvul.003G028100 Phaseolus vulgaris HOM05D004993 ORTHO05D008532 5.7e-16 87.8 99 47.5
GSVIVG01011941001 Vitis vinifera HOM05D004993 ORTHO05D008532 5.7e-16 87.8 99 48.5
AUR62035273 Chenopodium quinoa HOM05D004993 ORTHO05D008532 7.4e-16 87.4 99 50.5
Cc11_g10510 Coffea canephora HOM05D004993 ORTHO05D008532 7.4e-16 87.4 103 47.6
Haze_17449 Corylus avellana HOM05D004993 ORTHO05D008532 7.4e-16 87.4 99 48.5
Sabra08G0089200 Salix brachista HOM05D004993 ORTHO05D008532 9.7e-16 87.0 100 48.0
TAR371G0197 Trochodendron aralioides HOM05D004993 ORTHO05D008532 9.7e-16 87.0 99 48.5
Actinidia38387 Actinidia chinensis HOM05D004993 ORTHO05D008532 1.3e-15 86.7 100 46.0
HanXRQChr17g0567931 Helianthus annuus HOM05D004993 ORTHO05D008532 1.3e-15 86.7 101 46.5
RcHm_v2.0_Chr4g0435691 Rosa chinensis HOM05D004993 ORTHO05D008532 1.3e-15 86.7 99 48.5
MSTRG.7682 Avicennia marina HOM05D004993 ORTHO05D008532 1.6e-15 86.3 103 45.6
AUR62002913 Chenopodium quinoa HOM05D004993 ORTHO05D008532 1.6e-15 86.3 99 49.5
SGA_v2.0_scaffold209G42027 Striga asiatica HOM05D004993 ORTHO05D008532 2.2e-15 85.9 103 46.6
CiPaw.16G003600 Carya illinoinensis HOM05D004993 ORTHO05D008532 2.8e-15 85.5 101 47.5
Gohir.A12G169600 Gossypium hirsutum HOM05D004993 ORTHO05D008532 2.8e-15 85.5 99 47.5
Ciclev10031998m.g Citrus clementina HOM05D004993 ORTHO05D008532 3.7e-15 85.1 99 47.5
Duzib251G0893 Durio zibethinus HOM05D004993 ORTHO05D008532 3.7e-15 85.1 103 45.6
Migut.O00833 Erythranthe guttata HOM05D004993 ORTHO05D008532 3.7e-15 85.1 99 51.5
PSO782G1223 Papaver somniferum HOM05D004993 ORTHO05D008532 3.7e-15 85.1 99 48.5
VMungo1215G2957 Vigna mungo HOM05D004993 ORTHO05D008532 3.7e-15 85.1 99 47.5
CiPaw.15G004200 Carya illinoinensis HOM05D004993 ORTHO05D008532 4.8e-15 84.7 102 46.1
CsaV3_5G034030 Cucumis sativus L. HOM05D004993 ORTHO05D008532 4.8e-15 84.7 99 48.5
MBI16_g25106_MAGBIO Magnolia biondii HOM05D004993 ORTHO05D008532 4.8e-15 84.7 99 46.5
Nitab4.5_0004719g0040 Nicotiana tabacum HOM05D004993 ORTHO05D008532 4.8e-15 84.7 99 48.5
Nitab4.5_0000582g0040 Nicotiana tabacum HOM05D004993 ORTHO05D008532 6.3e-15 84.3 99 48.5
Prupe.1G306400 Prunus persica HOM05D004993 ORTHO05D008532 6.3e-15 84.3 99 46.5
Cpa.g.c35723 Carica papaya HOM05D004993 ORTHO05D008532 8.2e-15 84.0 99 46.5
MELO3C012219.2 Cucumis melo HOM05D004993 ORTHO05D008532 8.2e-15 84.0 99 48.5
MD16G1046900 Malus domestica HOM05D004993 ORTHO05D008532 8.2e-15 84.0 99 46.5
CAN.G630.88 Capsicum annuum HOM05D004993 ORTHO05D008532 1.1e-14 83.6 97 48.5
Potri.008G117600 Populus trichocarpa HOM05D004993 ORTHO05D008532 1.1e-14 83.6 99 47.5
SalBow8G3546 Salvia bowleyana HOM05D004993 ORTHO05D008532 1.1e-14 83.6 103 48.5
Peaxi162Scf00004g01611 Petunia axillaris HOM05D004993 ORTHO05D008532 1.4e-14 83.2 99 47.5
COL.COLO4_07879 Corchorus olitorius HOM05D004993 ORTHO05D008532 1.8e-14 82.8 99 47.5
Eucgr.B03043 Eucalyptus grandis HOM05D004993 ORTHO05D008532 1.8e-14 82.8 97 50.5
unitig_8.g3446 Utricularia gibba HOM05D004993 ORTHO05D008532 2.4e-14 82.4 99 45.5
Ah.02g127080 Amaranthus hybridus HOM05D004993 ORTHO05D008532 3.1e-14 82.0 99 49.5
Sed0024124 Sechium edule HOM05D004993 ORTHO05D008532 4.1e-14 81.6 99 45.5
PGSC0003DMG402001731 Solanum tuberosum HOM05D004993 ORTHO05D008532 4.1e-14 81.6 99 47.5
Medtr5g054360 Medicago truncatula HOM05D004993 ORTHO05D008532 5.3e-14 81.3 100 46.0
Nn3g17764 Nelumbo nucifera HOM05D004993 ORTHO05D008532 2.0e-13 79.3 99 43.4
ECA234G2629 Erigeron canadensis HOM05D004993 ORTHO05D008532 2.6e-13 79.0 99 49.5
CSS0008970 Camellia sinensis var. sinensis HOM05D004993 ORTHO05D008532 3.4e-13 78.6 100 44.0
PGR102G1294 Punica granatum HOM05D004993 ORTHO05D008532 4.5e-13 78.2 99 46.5
EL10Ac6g14467 Beta vulgaris HOM05D004993 ORTHO05D008532 7.6e-13 77.4 99 48.5
CSS0044433 Camellia sinensis var. sinensis HOM05D004993 ORTHO05D008532 1.0e-12 77.0 103 42.7
ATR0681G095 Amborella trichopoda HOM05D004993 ORTHO05D008532 2.2e-12 75.9 99 44.4
CDE04G2310 Ceratophyllum demersum HOM05D004993 ORTHO05D008532 6.5e-12 74.3 98 45.9
MD13G1045600 Malus domestica HOM05D004993 ORTHO05D008532 6.5e-12 74.3 115 39.1
Aqoxy3G03926 Aquilegia oxysepala HOM05D004993 ORTHO05D008532 8.5e-12 73.9 99 41.4
HPP92_005309 Vanilla planifolia HOM05D004993 ORTHO05D008532 1.9e-11 72.8 99 44.4
SEGI_28994 Sequoiadendron giganteum HOM05D004993 ORTHO05D008532 3.0e-09 65.5 100 40.0
AagrBONN_evm.TU.Sc2ySwM_344.778 Anthoceros agrestis HOM05D004993 ORTHO05D008532 6.7e-09 64.3 101 37.6
SMO361G0287 Selaginella moellendorffii HOM05D004993 ORTHO05D008532 8.8e-09 63.9 99 39.4
Os12g0641300 Oryza sativa ssp. japonica HOM05D004993 ORTHO05D008532 7.4e-08 60.8 91 42.9
Pp3c15_25860 Physcomitrium patens HOM05D004993 ORTHO05D008532 7.4e-08 60.8 99 34.3
Zm00001eb133920 Zea mays HOM05D004993 ORTHO05D008532 2.2e-07 59.3 107 40.2
Mapoly0053s0088 Marchantia polymorpha HOM05D004993 ORTHO05D008532 2.8e-07 58.9 99 32.3


User provided reference genes

Program Settings