Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR028870 Cardamine hirsuta HOM05D006942 ORTHO05D008737 2.5e-164 582.0 287 100.0
SpUn0001_1050 Schrenkiella parvula HOM05D006942 ORTHO05D008737 4.4e-137 491.5 284 85.9
AL1G64670 Arabidopsis lyrata HOM05D006942 ORTHO05D008737 2.0e-134 482.6 285 85.6
Carub.0002s0962 Capsella rubella HOM05D006942 ORTHO05D008737 7.5e-129 464.2 289 81.7
AT2G23840 Arabidopsis thaliana HOM05D006942 ORTHO05D008737 5.6e-124 448.0 287 80.8
BcaC04g22009 Brassica carinata HOM05D006942 ORTHO05D008737 1.4e-122 443.4 284 80.3
C09p24900 Brassica napus HOM05D006942 ORTHO05D008737 1.4e-122 443.4 284 80.3
BolC9t55381H Brassica oleracea HOM05D006942 ORTHO05D008737 1.4e-122 443.4 284 80.3
A09p19530 Brassica napus HOM05D006942 ORTHO05D008737 4.0e-122 441.8 284 79.9
BcaB07g31088 Brassica carinata HOM05D006942 ORTHO05D008737 9.8e-121 437.2 281 79.7
Aa31LG2G1990 Aethionema arabicum HOM05D006942 ORTHO05D008737 2.7e-118 429.1 298 74.5
THA.LOC104823787 Tarenaya hassleriana HOM05D006942 ORTHO05D008737 1.7e-117 426.4 290 76.9
Thhalv10008350m.g Eutrema salsugineum HOM05D006942 ORTHO05D008737 1.3e-109 400.2 290 75.5
TAR633G0669 Trochodendron aralioides HOM05D006942 ORTHO05D008737 2.5e-92 342.8 288 63.5
Manes.08G149200 Manihot esculenta HOM05D006942 ORTHO05D008737 3.3e-92 342.4 284 65.1
Nn7g35832 Nelumbo nucifera HOM05D006942 ORTHO05D008737 5.6e-92 341.7 290 63.1
ClCG10G013230 Citrullus lanatus HOM05D006942 ORTHO05D008737 7.3e-92 341.3 285 64.2
CsaV3_3G043400 Cucumis sativus L. HOM05D006942 ORTHO05D008737 7.3e-92 341.3 287 64.8
FvH4_3g25250 Fragaria vesca HOM05D006942 ORTHO05D008737 2.1e-91 339.7 231 74.0
Nn2g15884 Nelumbo nucifera HOM05D002140 ORTHO05D008737 8.1e-91 337.8 287 61.3
QL07p020181 Quercus lobata HOM05D006942 ORTHO05D008737 1.8e-90 336.7 292 64.0
PGR042G3330 Punica granatum HOM05D006942 ORTHO05D008737 3.1e-90 335.9 297 62.6
MELO3C026901.2 Cucumis melo HOM05D006942 ORTHO05D008737 4.0e-90 335.5 288 63.5
FAN21G2944 Fragaria x ananassa HOM05D006942 ORTHO05D008737 4.0e-90 335.5 230 73.5
Atru.chr2.1323 Acer truncatum HOM05D006942 ORTHO05D008737 6.9e-90 334.7 283 64.0
Sed0013150 Sechium edule HOM05D006942 ORTHO05D008737 5.8e-89 331.6 291 62.2
FAN16G3006 Fragaria x ananassa HOM05D006942 ORTHO05D008737 7.6e-89 331.3 231 72.7
MBI11_g05460_MAGBIO Magnolia biondii HOM05D006942 ORTHO05D008737 7.6e-89 331.3 280 61.1
Potri.013G059500 Populus trichocarpa HOM05D006942 ORTHO05D008737 7.6e-89 331.3 288 62.5
Rhsim04G0087000 Rhododendron simsii HOM05D006942 ORTHO05D008737 7.6e-89 331.3 287 61.0
Thecc.05G293100 Theobroma cacao HOM05D006942 ORTHO05D008737 7.6e-89 331.3 285 61.1
Duzib177G1195 Durio zibethinus HOM05D006942 ORTHO05D008737 1.1e-87 327.4 288 59.4
Gorai.007G287900 Gossypium raimondii HOM05D006942 ORTHO05D008737 1.1e-87 327.4 288 60.1
Sed0025081 Sechium edule HOM05D006942 ORTHO05D008737 1.1e-87 327.4 285 62.5
COL.COLO4_13617 Corchorus olitorius HOM05D006942 ORTHO05D008737 1.4e-87 327.0 288 60.8
vmacro09146 Vaccinium macrocarpon HOM05D006942 ORTHO05D008737 1.4e-87 327.0 287 60.3
Gohir.D13G109500 Gossypium hirsutum HOM05D006942 ORTHO05D008737 5.4e-87 325.1 290 57.9
GSVIVG01033386001 Vitis vinifera HOM05D006942 ORTHO05D008737 5.4e-87 325.1 182 81.3
Ciclev10021582m.g Citrus clementina HOM05D006942 ORTHO05D008737 9.3e-87 324.3 274 62.4
MD12G1002500 Malus domestica HOM05D006942 ORTHO05D008737 1.2e-86 323.9 223 73.1
RcHm_v2.0_Chr5g0046891 Rosa chinensis HOM05D006942 ORTHO05D008737 1.2e-86 323.9 249 65.9
MSTRG.19939 Avicennia marina HOM05D006942 ORTHO05D008737 2.1e-86 323.2 190 77.9
Cc00_g08890 Coffea canephora HOM05D006942 ORTHO05D008737 2.7e-86 322.8 293 60.1
CANSAT78G1082 Cannabis sativa HOM05D006942 ORTHO05D008737 3.5e-86 322.4 289 60.9
TWI34G0045 Tripterygium wilfordii HOM05D006942 ORTHO05D008737 6.0e-86 321.6 223 72.2
Cpa.g.sc51.94 Carica papaya HOM05D006942 ORTHO05D008737 7.9e-86 321.2 298 59.4
Gorai.013G123100 Gossypium raimondii HOM05D006942 ORTHO05D008737 7.9e-86 321.2 288 58.0
Aqoxy2G00557 Aquilegia oxysepala HOM05D006942 ORTHO05D008737 1.8e-85 320.1 289 58.1
DCAR_009675 Daucus carota HOM05D006942 ORTHO05D008737 1.8e-85 320.1 186 79.6
Eucgr.A02087 Eucalyptus grandis HOM05D006942 ORTHO05D008737 3.0e-85 319.3 206 74.8
DCAR_019882 Daucus carota HOM05D006942 ORTHO05D008737 3.9e-85 318.9 279 60.2
Gohir.A13G105500 Gossypium hirsutum HOM05D006942 ORTHO05D008737 1.5e-84 317.0 282 57.4
Migut.J01895 Erythranthe guttata HOM05D006942 ORTHO05D008737 4.3e-84 315.5 194 77.3
SGA_v2.0_scaffold50G18512 Striga asiatica HOM05D006942 ORTHO05D008737 4.3e-84 315.5 187 78.1
PSO339G1210 Papaver somniferum HOM05D006942 ORTHO05D008737 5.6e-84 315.1 219 70.8
Sabra19G0041400 Salix brachista HOM05D006942 ORTHO05D008737 1.3e-83 313.9 286 59.8
Lalb_Chr24g0403081 Lupinus albus HOM05D006942 ORTHO05D008737 1.6e-83 313.5 190 77.9
arahy.Tifrunner.gnm1.ann1.0W916P Arachis hypogaea HOM05D006942 ORTHO05D008737 2.1e-83 313.2 189 78.8
Peaxi162Scf00076g01036 Petunia axillaris HOM05D006942 ORTHO05D008737 6.2e-83 311.6 248 66.1
VMungo1383G0897 Vigna mungo HOM05D006942 ORTHO05D008737 1.1e-82 310.8 187 77.5
HanXRQChr13g0398101 Helianthus annuus HOM05D006942 ORTHO05D008737 1.8e-82 310.1 274 60.9
Glyma.16G042200 Glycine max HOM05D006942 ORTHO05D008737 3.1e-82 309.3 285 59.6
CDE10G0368 Ceratophyllum demersum HOM05D006942 ORTHO05D008737 5.3e-82 308.5 286 58.4
Medtr7g085420 Medicago truncatula HOM05D006942 ORTHO05D008737 1.2e-81 307.4 183 79.2
ATR0697G165 Amborella trichopoda HOM05D006942 ORTHO05D008737 1.5e-81 307.0 234 65.4
Phvul.001G109600 Phaseolus vulgaris HOM05D006942 ORTHO05D008737 2.6e-81 306.2 187 76.5
Haze_19409 Corylus avellana HOM05D006942 ORTHO05D008737 3.4e-81 305.8 325 55.1
ECA233G4155 Erigeron canadensis HOM05D006942 ORTHO05D008737 3.4e-81 305.8 242 64.9
Lj1g0019871 Lotus japonicus HOM05D006942 ORTHO05D008737 4.5e-81 305.4 230 67.0
Psat3g089160 Pisum sativum HOM05D006942 ORTHO05D008737 1.3e-80 303.9 191 74.9
TPR.G5873 Trifolium pratense HOM05D006942 ORTHO05D008737 1.3e-80 303.9 185 75.7
Eucgr.K01480 Eucalyptus grandis HOM05D006942 ORTHO05D008737 4.9e-80 302.0 187 73.8
Glyma.19G110300 Glycine max HOM05D006942 ORTHO05D008737 4.9e-80 302.0 294 57.5
Lsat_1_v5_gn_6_36781 Lactuca sativa HOM05D006942 ORTHO05D008737 4.9e-80 302.0 289 59.5
HPP92_018642 Vanilla planifolia HOM05D006942 ORTHO05D008737 4.2e-79 298.9 200 69.0
TAR623G0107 Trochodendron aralioides HOM05D002140 ORTHO05D002382 9.6e-76 287.7 166 80.1
CDE06G2457 Ceratophyllum demersum HOM05D006942 ORTHO05D008737 1.3e-75 287.3 235 62.1
PGR142G1268 Punica granatum HOM05D006942 ORTHO05D008737 4.0e-74 282.3 193 69.9
EL10Ac3g06808 Beta vulgaris HOM05D006942 ORTHO05D008737 2.0e-73 280.0 249 59.0
Lalb_Chr06g0173931 Lupinus albus HOM05D006942 ORTHO05D008737 2.0e-73 280.0 238 60.5
Os07g0170200 Oryza sativa ssp. japonica HOM05D006942 ORTHO05D008737 4.9e-72 275.4 165 77.6
Gohir.D11G268200 Gossypium hirsutum HOM05D006942 ORTHO05D008737 6.7e-69 265.0 288 51.7
Prupe.7G002400 Prunus persica HOM05D006942 ORTHO05D008737 6.7e-69 265.0 160 76.9
Sabra13G0052800 Salix brachista HOM05D006942 ORTHO05D008737 3.7e-67 259.2 156 77.6
CiPaw.09G001300 Carya illinoinensis HOM05D006942 ORTHO05D008737 6.3e-67 258.5 151 77.5
Lj2A357G77 Lonicera japonica HOM05D006942 ORTHO05D008737 2.4e-66 256.5 151 79.5
AUR62032674 Chenopodium quinoa HOM05D006942 ORTHO05D008737 3.1e-66 256.1 172 68.0
Actinidia38618 Actinidia chinensis HOM05D006942 ORTHO05D008737 5.9e-65 251.9 174 70.1
CSS0046453 Camellia sinensis var. sinensis HOM05D006942 ORTHO05D008737 2.9e-64 249.6 283 52.3
Sc13g0007650 Simmondsia chinensis HOM05D006942 ORTHO05D008737 1.0e-61 241.1 240 56.7
Ca_08258_v3 Cicer arietinum L. HOM05D006942 ORTHO05D008737 8.8e-61 238.0 148 76.4
Manes.09G142700 Manihot esculenta HOM05D006942 ORTHO05D008737 1.4e-58 230.7 221 60.2
AUR62032073 Chenopodium quinoa HOM05D006942 ORTHO05D008737 9.1e-58 228.0 166 65.1
AagrBONN_evm.TU.Sc2ySwM_344.2088 Anthoceros agrestis HOM05D006942 ORTHO05D008737 1.0e-56 224.6 189 55.6
Mapoly0043s0076 Marchantia polymorpha HOM05D006942 ORTHO05D008737 5.5e-55 218.8 249 48.2
Pp3c12_13900 Physcomitrium patens HOM05D006942 ORTHO05D008737 1.6e-54 217.2 188 54.8
Pp3c4_7620 Physcomitrium patens HOM05D006942 ORTHO05D008737 3.6e-54 216.1 188 55.3
Duzib128G0620 Durio zibethinus HOM05D006942 ORTHO05D008737 2.6e-52 209.9 250 48.4
arahy.Tifrunner.gnm1.ann1.T4HPZA Arachis hypogaea HOM05D006942 ORTHO05D008737 1.3e-51 207.6 189 58.7
Nitab4.5_0000911g0030 Nicotiana tabacum HOM05D006942 ORTHO05D008737 5.3e-50 202.2 166 66.9
Ah.04g153240 Amaranthus hybridus HOM05D000653 ORTHO05D003117 1.1e-47 194.5 176 58.0
SMO364G0530 Selaginella moellendorffii HOM05D006942 ORTHO05D008737 1.4e-47 194.1 187 49.2
unitig_85.g27430 Utricularia gibba HOM05D006942 ORTHO05D008737 1.0e-45 188.0 139 66.9
Oeu048436.1 Olea europaea HOM05D006942 ORTHO05D008737 4.8e-43 179.1 167 55.7
CBR_g603 Chara braunii HOM05D006942 ORTHO05D008737 4.1e-42 176.0 209 47.8
Hund24842 Selenicereus undatus HOM05D006942 ORTHO05D008737 5.0e-40 169.1 280 38.6
Actinidia17307 Actinidia chinensis HOM05D006942 ORTHO05D008737 3.0e-37 159.8 107 70.1
Potri.019G033200 Populus trichocarpa HOM05D006942 ORTHO05D008737 8.8e-37 158.3 284 37.7
PRCOL_00006758 Prasinoderma coloniale HOM05D006942 ORTHO05D008737 8.8e-37 158.3 148 52.7
Gohir.A11G258200 Gossypium hirsutum HOM05D006942 ORTHO05D008737 5.7e-36 155.6 288 37.8
SalBow2G1960 Salvia bowleyana HOM05D006942 ORTHO05D008737 7.5e-36 155.2 93 74.2
Cre04.g217903 Chlamydomonas reinhardtii HOM05D006942 ORTHO05D008737 7.0e-34 148.7 175 43.4
SEGI_36650 Sequoiadendron giganteum HOM05D006942 ORTHO05D008737 2.8e-19 100.1 154 44.2
Zm00001eb300960 Zea mays HOM05D006942 ORTHO05D008737 2.4e-10 70.5 44 72.7
Pp3s30_1160 Physcomitrium patens HOM05D006942 ORTHO05D317230 1.2e-06 58.2 59 42.4


User provided reference genes

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