Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR028640 Cardamine hirsuta HOM05D004497 ORTHO05D005539 3.5e-245 851.3 461 100.0
AL1G43130 Arabidopsis lyrata HOM05D004497 ORTHO05D005539 6.7e-220 767.3 469 87.8
AT1G29320 Arabidopsis thaliana HOM05D004497 ORTHO05D005539 6.9e-217 757.3 469 88.3
Carub.0001s2754 Capsella rubella HOM05D004497 ORTHO05D005539 2.3e-212 742.3 467 85.4
Thhalv10007651m.g Eutrema salsugineum HOM05D004497 ORTHO05D005539 2.1e-197 692.6 475 75.8
BraA08t34469Z Brassica rapa HOM05D004497 ORTHO05D005539 2.3e-196 689.1 500 72.6
BolC3t19835H Brassica oleracea HOM05D004497 ORTHO05D005539 2.2e-194 682.6 473 74.6
Sp1g25270 Schrenkiella parvula HOM05D004497 ORTHO05D005539 1.1e-193 680.2 475 74.7
BcaC01g00099 Brassica carinata HOM05D004497 ORTHO05D005539 6.5e-191 671.0 473 74.0
A08p25140 Brassica napus HOM05D004497 ORTHO05D005539 4.7e-189 664.8 470 73.8
C03p75750 Brassica napus HOM05D004497 ORTHO05D005539 2.3e-188 662.5 473 73.4
BraA09t39216Z Brassica rapa HOM05D004497 ORTHO05D005539 2.0e-187 659.4 471 72.0
BcaB03g12154 Brassica carinata HOM05D004497 ORTHO05D005539 4.1e-185 651.7 420 77.6
C05p28100 Brassica napus HOM05D004497 ORTHO05D005539 3.5e-184 648.7 375 83.7
BcaC05g26958 Brassica carinata HOM05D004497 ORTHO05D005539 7.7e-184 647.5 375 83.5
BolC5t31537H Brassica oleracea HOM05D004497 ORTHO05D005539 7.7e-184 647.5 373 83.9
A09p36980 Brassica napus HOM05D004497 ORTHO05D005539 2.1e-181 639.4 470 70.2
BcaB07g32523 Brassica carinata HOM05D004497 ORTHO05D005539 2.3e-180 636.0 476 71.8
Aa31LG6G6220 Aethionema arabicum HOM05D004497 ORTHO05D005539 3.7e-178 628.6 472 69.9
THA.LOC104820611 Tarenaya hassleriana HOM05D004497 ORTHO05D005539 1.1e-153 547.4 368 70.1
THA.LOC104814264 Tarenaya hassleriana HOM05D004497 ORTHO05D005539 1.1e-150 537.3 357 70.0
RcHm_v2.0_Chr7g0190661 Rosa chinensis HOM05D004497 ORTHO05D005539 8.1e-141 504.6 402 61.7
Sabra15G0114200 Salix brachista HOM05D004497 ORTHO05D005539 5.4e-137 491.9 407 61.4
Thecc.03G125300 Theobroma cacao HOM05D004497 ORTHO05D005539 5.4e-137 491.9 398 62.1
Potri.012G095100 Populus trichocarpa HOM05D004497 ORTHO05D005539 2.7e-136 489.6 390 62.1
CiPaw.08G116800 Carya illinoinensis HOM05D004497 ORTHO05D005539 1.7e-135 486.9 411 59.6
Actinidia25597 Actinidia chinensis HOM05D004497 ORTHO05D005539 3.0e-135 486.1 407 59.0
FAN18G2816 Fragaria x ananassa HOM05D004497 ORTHO05D005539 6.6e-135 485.0 411 59.9
Potri.015G092400 Populus trichocarpa HOM05D004497 ORTHO05D005539 6.6e-135 485.0 391 61.9
FvH4_5g07760 Fragaria vesca HOM05D004497 ORTHO05D005539 1.9e-134 483.4 411 59.9
FAN08G0052 Fragaria x ananassa HOM05D004497 ORTHO05D005539 9.5e-134 481.1 411 59.9
GSVIVG01013111001 Vitis vinifera HOM05D004497 ORTHO05D005539 9.5e-134 481.1 381 62.5
Nitab4.5_0002978g0150 Nicotiana tabacum HOM05D004497 ORTHO05D005539 1.6e-133 480.3 397 59.9
Atru.chr3.3406 Acer truncatum HOM05D004497 ORTHO05D005539 2.1e-133 479.9 411 59.4
CsaV3_1G009480 Cucumis sativus L. HOM05D004497 ORTHO05D005539 2.1e-133 479.9 396 62.1
FAN04G2053 Fragaria x ananassa HOM05D004497 ORTHO05D005539 6.2e-133 478.4 395 61.3
MD06G1147200 Malus domestica HOM05D004497 ORTHO05D005539 1.1e-132 477.6 406 59.1
COL.COLO4_28066 Corchorus olitorius HOM05D004497 ORTHO05D005539 1.4e-132 477.2 396 60.6
Gohir.A09G246200 Gossypium hirsutum HOM05D004497 ORTHO05D005539 1.4e-132 477.2 397 61.0
QL10p004476 Quercus lobata HOM05D004497 ORTHO05D005539 1.4e-132 477.2 414 58.0
Gohir.D09G246800 Gossypium hirsutum HOM05D004497 ORTHO05D005539 3.1e-132 476.1 412 59.0
ClCG03G003620 Citrullus lanatus HOM05D004497 ORTHO05D005539 4.0e-132 475.7 396 60.6
PGSC0003DMG400005828 Solanum tuberosum HOM05D004497 ORTHO05D005539 6.8e-132 474.9 362 63.0
MD14G1161100 Malus domestica HOM05D004497 ORTHO05D005539 8.9e-132 474.6 467 58.9
PGR083G2085 Punica granatum HOM05D004497 ORTHO05D005539 1.2e-131 474.2 409 58.7
TAR625G0069 Trochodendron aralioides HOM05D004497 ORTHO05D005539 1.2e-131 474.2 415 58.3
Haze_07247 Corylus avellana HOM05D004497 ORTHO05D005539 1.5e-131 473.8 355 63.4
Nitab4.5_0000903g0080 Nicotiana tabacum HOM05D004497 ORTHO05D005539 2.0e-131 473.4 362 62.2
Sed0020059 Sechium edule HOM05D004497 ORTHO05D005539 2.0e-131 473.4 390 59.7
Solyc08g008160.4 Solanum lycopersicum HOM05D004497 ORTHO05D005539 2.0e-131 473.4 362 62.7
Duzib205G0501 Durio zibethinus HOM05D004497 ORTHO05D005539 3.4e-131 472.6 398 59.5
Sopen08g004010 Solanum pennellii HOM05D004497 ORTHO05D005539 5.8e-131 471.9 362 62.7
Cfa013402 Carpinus fangiana HOM05D004497 ORTHO05D005539 1.7e-130 470.3 394 59.4
Gorai.006G271300 Gossypium raimondii HOM05D004497 ORTHO05D005539 4.9e-130 468.8 397 60.2
HanXRQChr05g0153981 Helianthus annuus HOM05D004497 ORTHO05D005539 4.9e-130 468.8 382 60.5
Ciclev10020238m.g Citrus clementina HOM05D004497 ORTHO05D005539 1.1e-129 467.6 397 59.9
Eucgr.C01065 Eucalyptus grandis HOM05D004497 ORTHO05D005539 7.1e-129 464.9 415 57.3
Lsat_1_v5_gn_5_13520 Lactuca sativa HOM05D004497 ORTHO05D005539 7.1e-129 464.9 376 61.7
QL07p000007 Quercus lobata HOM05D004497 ORTHO05D005539 7.1e-129 464.9 414 57.0
QL93p0225_0015 Quercus lobata HOM05D004497 ORTHO05D005539 1.6e-128 463.8 414 56.8
Lj9A476T57 Lonicera japonica HOM05D004497 ORTHO05D005539 3.5e-128 462.6 340 64.4
CANSAT56G3508 Cannabis sativa HOM05D004497 ORTHO05D005539 1.0e-127 461.1 421 56.8
TWI14G0260 Tripterygium wilfordii HOM05D004497 ORTHO05D005539 1.3e-127 460.7 411 56.9
Eucgr.K00186 Eucalyptus grandis HOM05D004497 ORTHO05D005539 2.3e-127 459.9 394 57.9
Rhsim08G0187300 Rhododendron simsii HOM05D004497 ORTHO05D005539 2.3e-127 459.9 420 55.5
Cc05_g04600 Coffea canephora HOM05D004497 ORTHO05D005539 3.9e-127 459.1 391 57.5
Gohir.A12G276900 Gossypium hirsutum HOM05D004497 ORTHO05D005539 5.1e-127 458.8 359 62.7
Phvul.003G017500 Phaseolus vulgaris HOM05D004497 ORTHO05D005539 6.6e-127 458.4 388 59.0
SalBow8G1477 Salvia bowleyana HOM05D004497 ORTHO05D005539 6.6e-127 458.4 398 58.0
Glyma.16G034400 Glycine max HOM05D004497 ORTHO05D005539 3.3e-126 456.1 393 58.3
Aqoxy5G03475 Aquilegia oxysepala HOM05D004497 ORTHO05D005539 4.3e-126 455.7 362 60.2
Ah.08g212900 Amaranthus hybridus HOM05D004497 ORTHO05D005539 9.6e-126 454.5 417 56.8
SGA_v2.0_scaffold215G42316 Striga asiatica HOM05D004497 ORTHO05D005539 9.6e-126 454.5 410 55.6
Sc10g0010400 Simmondsia chinensis HOM05D004497 ORTHO05D005539 1.6e-125 453.8 358 59.8
VMungo0331G1674 Vigna mungo HOM05D004497 ORTHO05D005539 1.6e-125 453.8 393 57.3
TAR629G1275 Trochodendron aralioides HOM05D004497 ORTHO05D005539 2.1e-125 453.4 422 56.6
CSS0032894 Camellia sinensis var. sinensis HOM05D004497 ORTHO05D005539 2.8e-125 453.0 399 56.6
ECA246G4485 Erigeron canadensis HOM05D004497 ORTHO05D005539 4.7e-125 452.2 476 50.8
SalBow5G0098 Salvia bowleyana HOM05D004497 ORTHO05D005539 8.1e-125 451.4 424 55.4
SalBow5G4825 Salvia bowleyana HOM05D004497 ORTHO05D005539 8.1e-125 451.4 424 55.4
Lalb_Chr03g0040831 Lupinus albus HOM05D004497 ORTHO05D005539 1.4e-124 450.7 396 57.1
Migut.I00519 Erythranthe guttata HOM05D004497 ORTHO05D005539 1.8e-124 450.3 397 56.4
PSO782G0077 Papaver somniferum HOM05D004497 ORTHO05D005539 1.8e-124 450.3 377 59.7
Peaxi162Scf00078g00424 Petunia axillaris HOM05D004497 ORTHO05D005539 1.8e-124 450.3 339 63.1
QL04p081834 Quercus lobata HOM05D004497 ORTHO05D005539 1.8e-124 450.3 428 54.9
PSO063G4711 Papaver somniferum HOM05D004497 ORTHO05D005539 3.1e-124 449.5 377 60.2
MELO3C002347.2 Cucumis melo HOM05D004497 ORTHO05D005539 5.2e-124 448.7 340 63.2
FAN13G1359 Fragaria x ananassa HOM05D004497 ORTHO05D005539 1.2e-123 447.6 400 57.5
vmacro20468 Vaccinium macrocarpon HOM05D004497 ORTHO05D005539 2.0e-123 446.8 441 53.5
Psat3g028160 Pisum sativum HOM05D004497 ORTHO05D005539 7.6e-123 444.9 403 56.6
Glyma.07G068400 Glycine max HOM05D004497 ORTHO05D005539 2.2e-122 443.4 355 61.1
arahy.Tifrunner.gnm1.ann1.0L2FVX Arachis hypogaea HOM05D004497 ORTHO05D005539 2.9e-122 443.0 403 57.1
arahy.Tifrunner.gnm1.ann1.16KDXT Arachis hypogaea HOM05D004497 ORTHO05D005539 2.9e-122 443.0 403 57.1
Ca_09070_v3 Cicer arietinum L. HOM05D004497 ORTHO05D005539 4.9e-122 442.2 399 56.6
Ca_04603_v3 Cicer arietinum L. HOM05D004497 ORTHO05D005539 1.9e-121 440.3 416 55.5
Manes.14G053800 Manihot esculenta HOM05D004497 ORTHO05D005539 1.9e-121 440.3 345 60.6
EL10As4g23444 Beta vulgaris HOM05D004497 ORTHO05D005539 3.2e-121 439.5 408 56.6
Hund03342 Selenicereus undatus HOM05D004497 ORTHO05D005539 4.2e-121 439.1 372 58.9
Nn4g26409 Nelumbo nucifera HOM05D004497 ORTHO05D005539 7.1e-121 438.3 394 57.9
MBI11_g15865_MAGBIO Magnolia biondii HOM05D004497 ORTHO05D005539 1.2e-120 437.6 379 57.0
Lj1g0020744 Lotus japonicus HOM05D004497 ORTHO05D005539 2.7e-120 436.4 415 55.4
MSTRG.22910 Avicennia marina HOM05D004497 ORTHO05D005539 6.0e-120 435.3 403 54.6
TPR.G34454 Trifolium pratense HOM05D004497 ORTHO05D005539 7.8e-120 434.9 433 53.3
Medtr7g106650 Medicago truncatula HOM05D004497 ORTHO05D005539 3.0e-119 433.0 414 54.6
Dinv11148 Davidia involucrata HOM05D004497 ORTHO05D005539 9.6e-118 427.9 379 57.3
Dinv04858 Davidia involucrata HOM05D004497 ORTHO05D005539 4.0e-116 422.5 321 63.2
Oeu005018.3 Olea europaea HOM05D004497 ORTHO05D005539 1.5e-115 420.6 448 49.1
DCAR_012679 Daucus carota HOM05D004497 ORTHO05D005539 5.8e-115 418.7 351 59.8
CDE08G0729 Ceratophyllum demersum HOM05D004497 ORTHO05D005539 1.0e-111 407.9 413 51.3
Prupe.1G584300 Prunus persica HOM05D004497 ORTHO05D005539 3.9e-111 406.0 412 53.9
AUR62025903 Chenopodium quinoa HOM05D004497 ORTHO05D005539 1.2e-107 394.4 397 52.4
ATR0171G018 Amborella trichopoda HOM05D004497 ORTHO05D005539 1.7e-106 390.6 368 51.9
CiPaw.11G010200 Carya illinoinensis HOM05D004497 ORTHO05D005539 6.4e-106 388.7 336 58.0
TWI39G1139 Tripterygium wilfordii HOM05D004497 ORTHO05D005539 9.3e-105 384.8 443 48.3
Zm00001eb105680 Zea mays HOM05D004497 ORTHO05D005539 2.7e-104 383.3 362 53.0
HPP92_023861 Vanilla planifolia HOM05D004497 ORTHO05D005539 7.9e-104 381.7 410 47.6
AUR62025086 Chenopodium quinoa HOM05D004497 ORTHO05D005539 3.7e-101 372.9 344 55.5
Cpa.g.sc166.23 Carica papaya HOM05D004497 ORTHO05D005539 5.3e-100 369.0 291 61.2
SEGI_30468 Sequoiadendron giganteum HOM05D004497 ORTHO05D005539 1.0e-98 364.8 418 44.0
Duzib068G0683 Durio zibethinus HOM05D004497 ORTHO05D005539 2.9e-98 363.2 291 61.9
Cfa014010 Carpinus fangiana HOM05D004497 ORTHO05D005539 1.4e-97 360.9 419 48.7
Sed0003097 Sechium edule HOM05D004497 ORTHO05D005539 1.4e-97 360.9 285 61.8
AUR62032705 Chenopodium quinoa HOM05D004497 ORTHO05D005539 2.5e-94 350.1 433 46.2
SHI10599 Sapria himalayana HOM05D004497 ORTHO05D005539 6.9e-92 342.0 322 52.8
Sabra12G0069700 Salix brachista HOM05D004497 ORTHO05D005539 4.5e-91 339.3 298 57.4
Aqoxy5G03495 Aquilegia oxysepala HOM05D004497 ORTHO05D005539 1.2e-88 331.3 293 54.6
Mapoly0079s0016 Marchantia polymorpha HOM05D004497 ORTHO05D005539 1.4e-81 307.8 401 42.6
unitig_699.g19657 Utricularia gibba HOM05D004497 ORTHO05D005539 4.2e-81 306.2 416 44.5
SMO165G0173 Selaginella moellendorffii HOM05D004497 ORTHO05D005539 6.1e-80 302.4 376 43.4
Pp3c13_24500 Physcomitrium patens HOM05D004497 ORTHO05D005539 3.3e-78 296.6 427 41.5
AUR62025094 Chenopodium quinoa HOM05D004497 ORTHO05D005539 3.1e-76 290.0 304 51.6
Os07g0506700 Oryza sativa ssp. japonica HOM05D004497 ORTHO05D005539 2.6e-75 287.0 298 49.7
Zm00001eb322320 Zea mays HOM05D004497 ORTHO05D005539 3.2e-65 253.4 200 59.5
Nitab4.5_0003013g0030 Nicotiana tabacum HOM05D004497 ORTHO05D005539 1.0e-63 248.4 404 40.6
vmacro19222 Vaccinium macrocarpon HOM05D004497 ORTHO05D005539 4.0e-63 246.5 236 53.0
AUR62029644 Chenopodium quinoa HOM05D004497 ORTHO05D005539 2.7e-56 223.8 226 51.8
AagrBONN_evm.TU.Sc2ySwM_344.3271 Anthoceros agrestis HOM05D000006 ORTHO05D004030 8.6e-50 202.2 303 39.6
SalBow8G1815 Salvia bowleyana HOM05D004497 ORTHO05D005539 1.5e-46 191.4 163 60.7
Ca_16680_v3 Cicer arietinum L. HOM05D000160 ORTHO05D000496 5.7e-46 189.5 127 68.5
Actinidia19491 Actinidia chinensis HOM05D004497 ORTHO05D005539 3.7e-45 186.8 320 36.2
RcHm_v2.0_Chr0c30g0501231 Rosa chinensis HOM05D004497 ORTHO05D005539 1.2e-43 181.8 358 36.6
RcHm_v2.0_Chr3g0452771 Rosa chinensis HOM05D004497 ORTHO05D005539 1.2e-43 181.8 358 36.6
CBR_g31949 Chara braunii HOM05D004497 ORTHO05D005539 1.6e-43 181.4 411 32.6
AUR62025088 Chenopodium quinoa HOM05D004497 ORTHO05D005539 1.3e-42 178.3 230 43.9
AUR62025079 Chenopodium quinoa HOM05D004497 ORTHO05D005539 3.4e-38 163.7 155 54.2
RcHm_v2.0_Chr5g0041021 Rosa chinensis HOM05D004497 ORTHO05D005539 1.2e-35 155.2 375 31.7
MCO03G018 Micromonas commoda HOM05D004497 ORTHO05D005539 2.5e-25 120.9 388 24.7
Cre17.g718650 Chlamydomonas reinhardtii HOM05D004497 ORTHO05D005539 5.6e-25 119.8 376 26.3
C04p39580 Brassica napus HOM05D004497 ORTHO05D005539 4.4e-22 110.2 86 68.6
BolC4t25523H Brassica oleracea HOM05D004497 ORTHO05D005539 4.4e-22 110.2 86 68.6
PRCOL_00003967 Prasinoderma coloniale HOM05D004497 ORTHO05D005539 4.9e-21 106.7 249 29.7
TAR371G1248 Trochodendron aralioides HOM05D004497 ORTHO05D005539 3.5e-19 100.5 131 42.7
Gohir.D13G181701 Gossypium hirsutum HOM05D004497 ORTHO05D005539 1.3e-13 82.0 104 45.2
AUR62025092 Chenopodium quinoa HOM05D004497 ORTHO05D005539 3.8e-13 80.5 53 69.8
Phvul.003G017700 Phaseolus vulgaris HOM05D004497 ORTHO05D005539 3.0e-10 70.9 95 45.3
Oeu006698.1 Olea europaea HOM05D004497 ORTHO05D005539 6.6e-10 69.7 71 52.1


User provided reference genes

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