Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR028610 Cardamine hirsuta HOM05D005059 ORTHO05D004248 3.7e-49 198.0 107 100.0
BcaB03g13892 Brassica carinata HOM05D005059 ORTHO05D004248 3.6e-44 181.4 107 88.8
A07p10740 Brassica napus HOM05D005059 ORTHO05D004248 8.1e-44 180.3 107 90.7
BraA07t28869Z Brassica rapa HOM05D005059 ORTHO05D004248 8.1e-44 180.3 107 90.7
BcaC06g35423 Brassica carinata HOM05D005059 ORTHO05D004248 1.2e-42 176.4 108 89.8
C07p16340 Brassica napus HOM05D005059 ORTHO05D004248 1.2e-42 176.4 108 89.8
BolC7t42128H Brassica oleracea HOM05D005059 ORTHO05D004248 1.2e-42 176.4 108 89.8
Carub.0001s2751 Capsella rubella HOM05D005059 ORTHO05D004248 8.4e-41 170.2 109 86.2
AT1G29290 Arabidopsis thaliana HOM05D005059 ORTHO05D004248 2.4e-40 168.7 108 85.2
AL1G43080 Arabidopsis lyrata HOM05D005059 ORTHO05D004248 7.1e-40 167.2 108 84.3
BcaC05g26955 Brassica carinata HOM05D005059 ORTHO05D004248 9.2e-40 166.8 107 85.0
A09p37060 Brassica napus HOM05D005059 ORTHO05D004248 9.2e-40 166.8 107 83.2
C05p28050 Brassica napus HOM05D005059 ORTHO05D004248 9.2e-40 166.8 107 85.0
BolC5t31533H Brassica oleracea HOM05D005059 ORTHO05D004248 9.2e-40 166.8 107 85.0
BraA09t39221Z Brassica rapa HOM05D005059 ORTHO05D004248 9.2e-40 166.8 107 83.2
Thhalv10009585m.g Eutrema salsugineum HOM05D005059 ORTHO05D004248 2.1e-39 165.6 107 83.2
BcaB07g32517 Brassica carinata HOM05D005059 ORTHO05D004248 1.0e-38 163.3 107 84.1
BcaC01g00093 Brassica carinata HOM05D005059 ORTHO05D004248 3.0e-38 161.8 107 80.4
C03p75700 Brassica napus HOM05D005059 ORTHO05D004248 3.0e-38 161.8 107 80.4
BolC3t19830H Brassica oleracea HOM05D005059 ORTHO05D004248 3.0e-38 161.8 107 80.4
Sp1g25220 Schrenkiella parvula HOM05D005059 ORTHO05D004248 5.1e-38 161.0 107 83.2
A08p25180 Brassica napus HOM05D005059 ORTHO05D004248 1.1e-37 159.8 107 79.4
BraA08t34472Z Brassica rapa HOM05D005059 ORTHO05D004248 1.1e-37 159.8 107 79.4
BcaB03g12151 Brassica carinata HOM05D005059 ORTHO05D004248 9.6e-37 156.8 108 80.6
Aa31LG6G6240 Aethionema arabicum HOM05D005059 ORTHO05D004248 4.5e-26 121.3 109 67.0
THA.LOC104820608 Tarenaya hassleriana HOM05D005059 ORTHO05D004248 2.2e-17 92.4 73 61.6
COL.COLO4_31233 Corchorus olitorius HOM05D005059 ORTHO05D004248 1.9e-13 79.3 99 48.5
CiPaw.09G073100 Carya illinoinensis HOM05D005059 ORTHO05D004248 2.5e-13 79.0 104 47.1
SalBow8G0022 Salvia bowleyana HOM05D005059 ORTHO05D004248 5.6e-13 77.8 63 58.7
Thecc.06G165400 Theobroma cacao HOM05D005059 ORTHO05D004248 7.4e-13 77.4 97 47.4
SalBow7G3765 Salvia bowleyana HOM05D005059 ORTHO05D004248 9.6e-13 77.0 98 46.9
Migut.H01411 Erythranthe guttata HOM05D005059 ORTHO05D004248 1.6e-12 76.3 102 47.1
Gohir.A05G153400 Gossypium hirsutum HOM05D005059 ORTHO05D004248 1.6e-12 76.3 100 50.0
Prupe.4G067000 Prunus persica HOM05D005059 ORTHO05D004248 2.1e-12 75.9 99 49.5
MSTRG.13233 Avicennia marina HOM05D005059 ORTHO05D004248 2.8e-12 75.5 96 49.0
CAN.G411.50 Capsicum annuum HOM05D005059 ORTHO05D004248 2.8e-12 75.5 107 42.1
Cfa000656 Carpinus fangiana HOM05D005059 ORTHO05D004248 2.8e-12 75.5 94 50.0
Haze_06169 Corylus avellana HOM05D005059 ORTHO05D004248 2.8e-12 75.5 104 47.1
Dinv12752 Davidia involucrata HOM05D005059 ORTHO05D004248 3.7e-12 75.1 63 57.1
Sopen02g021130 Solanum pennellii HOM05D005059 ORTHO05D004248 6.2e-12 74.3 98 46.9
Gohir.D05G156000 Gossypium hirsutum HOM05D005059 ORTHO05D004248 8.2e-12 73.9 100 49.0
Gorai.009G160500 Gossypium raimondii HOM05D005059 ORTHO05D004248 8.2e-12 73.9 100 49.0
QL05p049931 Quercus lobata HOM05D005059 ORTHO05D004248 1.1e-11 73.6 101 45.5
TAR624G0872 Trochodendron aralioides HOM05D005059 ORTHO05D004248 1.1e-11 73.6 104 43.3
Cc02_g15600 Coffea canephora HOM05D005059 ORTHO05D004248 1.8e-11 72.8 103 45.6
Oeu060173.1 Olea europaea HOM05D005059 ORTHO05D004248 1.8e-11 72.8 99 46.5
MBI07_g00460_MAGBIO Magnolia biondii HOM05D005059 ORTHO05D004248 2.4e-11 72.4 59 55.9
Potri.004G061300 Populus trichocarpa HOM05D005059 ORTHO05D004248 2.4e-11 72.4 98 43.9
FAN25G1124 Fragaria x ananassa HOM05D005059 ORTHO05D004248 4.0e-11 71.6 99 47.5
Hma1.2p1_0113F.1_g055120 Hydrangea macrophylla HOM05D005059 ORTHO05D004248 4.0e-11 71.6 98 44.9
Nn6g34461 Nelumbo nucifera HOM05D005059 ORTHO05D004248 4.0e-11 71.6 98 43.9
Sabra04G0040600 Salix brachista HOM05D005059 ORTHO05D004248 5.3e-11 71.2 50 64.0
TAR626G0600 Trochodendron aralioides HOM05D005059 ORTHO05D004248 5.3e-11 71.2 98 41.8
FvH4_3g07300 Fragaria vesca HOM05D005059 ORTHO05D004248 6.9e-11 70.9 99 46.5
Lsat_1_v5_gn_7_25601 Lactuca sativa HOM05D005059 ORTHO05D004248 6.9e-11 70.9 96 43.8
MD00G1009200 Malus domestica HOM05D005059 ORTHO05D004248 6.9e-11 70.9 106 48.1
MD00G1221100 Malus domestica HOM05D005059 ORTHO05D004248 6.9e-11 70.9 106 48.1
Oeu040922.1 Olea europaea HOM05D005059 ORTHO05D004248 6.9e-11 70.9 98 42.9
TAR624G0770 Trochodendron aralioides HOM05D005059 ORTHO05D004248 6.9e-11 70.9 104 41.3
Dinv18371 Davidia involucrata HOM05D000126 ORTHO05D000085 9.0e-11 70.5 95 42.1
FAN21G0043 Fragaria x ananassa HOM05D005059 ORTHO05D004248 9.0e-11 70.5 99 46.5
Nn3g21078 Nelumbo nucifera HOM05D005059 ORTHO05D004248 9.0e-11 70.5 98 45.9
PGSC0003DMG400028485 Solanum tuberosum HOM05D005059 ORTHO05D004248 9.0e-11 70.5 110 40.9
FAN16G0464 Fragaria x ananassa HOM05D005059 ORTHO05D004248 1.2e-10 70.1 99 46.5
Oeu060178.1 Olea europaea HOM05D005059 ORTHO05D004248 1.2e-10 70.1 98 44.9
Oeu043118.1 Olea europaea HOM05D005059 ORTHO05D004248 2.0e-10 69.3 98 41.8
Ciclev10018148m.g Citrus clementina HOM05D005059 ORTHO05D004248 2.6e-10 68.9 97 43.3
FAN11G2282 Fragaria x ananassa HOM05D005059 ORTHO05D004248 2.6e-10 68.9 99 45.5
MD10G1275500 Malus domestica HOM05D005059 ORTHO05D004248 5.8e-10 67.8 98 45.9
PGR042G3020 Punica granatum HOM05D005059 ORTHO05D004248 5.8e-10 67.8 106 47.2
Eucgr.D00466 Eucalyptus grandis HOM05D005059 ORTHO05D004248 7.6e-10 67.4 101 39.6
Manes.16G042800 Manihot esculenta HOM05D005059 ORTHO05D004248 7.6e-10 67.4 96 42.7
Manes.17G059300 Manihot esculenta HOM05D005059 ORTHO05D004248 1.0e-09 67.0 103 42.7
MSTRG.7430 Avicennia marina HOM05D005059 ORTHO05D004248 1.3e-09 66.6 100 44.0
CiPaw.10G061800 Carya illinoinensis HOM05D005059 ORTHO05D004248 1.3e-09 66.6 70 55.7
Potri.011G070500 Populus trichocarpa HOM05D005059 ORTHO05D004248 1.3e-09 66.6 86 45.3
Dinv32337 Davidia involucrata HOM05D005059 ORTHO05D004248 2.2e-09 65.9 61 57.4
TWI53G1149 Tripterygium wilfordii HOM05D005059 ORTHO05D004248 2.9e-09 65.5 102 41.2
Nitab4.5_0000788g0070 Nicotiana tabacum HOM05D005059 ORTHO05D004248 3.8e-09 65.1 97 40.2
MBI06_g16696_MAGBIO Magnolia biondii HOM05D005059 ORTHO05D004248 4.9e-09 64.7 62 51.6
Phvul.002G241108 Phaseolus vulgaris HOM05D005059 ORTHO05D004248 4.9e-09 64.7 99 41.4
TAR627G0439 Trochodendron aralioides HOM05D005059 ORTHO05D004248 4.9e-09 64.7 104 39.4
Glyma.05G161100 Glycine max HOM05D005059 ORTHO05D004248 6.5e-09 64.3 80 48.8
Medtr8g087390 Medicago truncatula HOM05D005059 ORTHO05D004248 6.5e-09 64.3 50 64.0
RcHm_v2.0_Chr5g0011661 Rosa chinensis HOM05D005059 ORTHO05D004248 6.5e-09 64.3 99 43.4
Ca_17896_v3 Cicer arietinum L. HOM05D005059 ORTHO05D004248 8.4e-09 63.9 50 66.0
Rhsim13G0187800 Rhododendron simsii HOM05D005059 ORTHO05D004248 8.4e-09 63.9 98 40.8
Phvul.006G173000 Phaseolus vulgaris HOM05D005059 ORTHO05D004248 1.1e-08 63.5 51 62.7
Psat7g068640 Pisum sativum HOM05D005059 ORTHO05D004248 1.1e-08 63.5 52 59.6
Aqoxy4G00224 Aquilegia oxysepala HOM05D005059 ORTHO05D004248 1.4e-08 63.2 100 40.0
CSS0000215 Camellia sinensis var. sinensis HOM05D005059 ORTHO05D004248 1.4e-08 63.2 83 43.4
DCAR_005145 Daucus carota HOM05D005059 ORTHO05D004248 1.9e-08 62.8 99 34.3
Gorai.010G161500 Gossypium raimondii HOM05D005059 ORTHO05D004248 3.2e-08 62.0 101 41.6
Dinv15004 Davidia involucrata HOM05D005059 ORTHO05D004248 5.5e-08 61.2 83 44.6
Hma1.2p1_0373F.1_g138420 Hydrangea macrophylla HOM05D005059 ORTHO05D004248 7.1e-08 60.8 69 52.2
CSS0038855 Camellia sinensis var. sinensis HOM05D005059 ORTHO05D004248 9.3e-08 60.5 104 41.3
Migut.M01008 Erythranthe guttata HOM05D005059 ORTHO05D004248 9.3e-08 60.5 96 40.6
Sabra11G0055200 Salix brachista HOM05D005059 ORTHO05D004248 9.3e-08 60.5 85 42.4
TPR.G6728 Trifolium pratense HOM05D005059 ORTHO05D004248 9.3e-08 60.5 97 42.3
Gohir.D06G138900 Gossypium hirsutum HOM05D005059 ORTHO05D004248 1.2e-07 60.1 101 41.6
Nitab4.5_0006663g0010 Nicotiana tabacum HOM05D005059 ORTHO05D004248 1.2e-07 60.1 99 39.4
DCAR_027980 Daucus carota HOM05D005059 ORTHO05D004248 1.6e-07 59.7 100 36.0
Glyma.13G226600 Glycine max HOM05D005059 ORTHO05D004248 1.6e-07 59.7 64 50.0
SGA_v2.0_scaffold1G00085 Striga asiatica HOM05D005059 ORTHO05D004248 1.6e-07 59.7 103 39.8
arahy.Tifrunner.gnm1.ann1.YNVN02 Arachis hypogaea HOM05D005059 ORTHO05D004248 3.5e-07 58.5 99 39.4
Glyma.08G118500 Glycine max HOM05D005059 ORTHO05D004248 3.5e-07 58.5 99 40.4
Gohir.A06G133800 Gossypium hirsutum HOM05D005059 ORTHO05D004248 3.5e-07 58.5 100 39.0
Sed0013946 Sechium edule HOM05D005059 ORTHO05D004248 3.5e-07 58.5 59 54.2
Ca_00473_v3 Cicer arietinum L. HOM05D005059 ORTHO05D004248 4.6e-07 58.2 77 45.5
DCAR_027979 Daucus carota HOM05D005059 ORTHO05D004248 4.6e-07 58.2 50 54.0
Lalb_Chr15g0086331 Lupinus albus HOM05D005059 ORTHO05D004248 4.6e-07 58.2 59 55.9
Rhsim04G0027000 Rhododendron simsii HOM05D002453 ORTHO05D008746 4.6e-07 58.2 63 47.6
Atru.chr10.1568 Acer truncatum HOM05D005059 ORTHO05D004248 6.0e-07 57.8 93 38.7
CSS0004272 Camellia sinensis var. sinensis HOM05D005059 ORTHO05D004248 7.9e-07 57.4 97 39.2
arahy.Tifrunner.gnm1.ann1.YXRF57 Arachis hypogaea HOM05D005059 ORTHO05D004248 1.8e-06 56.2 100 40.0
ClCG01G023900 Citrullus lanatus HOM05D005059 ORTHO05D004248 5.1e-06 54.7 53 56.6
Lj6g0009726 Lotus japonicus HOM05D005059 ORTHO05D004248 6.7e-06 54.3 98 38.8
Medtr2g016800 Medicago truncatula HOM05D005059 ORTHO05D004248 6.7e-06 54.3 70 45.7


User provided reference genes

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