Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR028550 Cardamine hirsuta HOM05D004030 ORTHO05D004952 2.2e-175 619.0 345 100.0
Thhalv10008084m.g Eutrema salsugineum HOM05D004030 ORTHO05D004952 2.4e-129 466.1 355 81.4
Sp1g25170 Schrenkiella parvula HOM05D004030 ORTHO05D004952 2.4e-129 466.1 356 80.9
AT1G29220 Arabidopsis thaliana HOM05D004030 ORTHO05D004952 9.0e-129 464.2 360 80.0
Carub.0001s2743 Capsella rubella HOM05D004030 ORTHO05D004952 1.5e-128 463.4 355 81.7
AL1G42980 Arabidopsis lyrata HOM05D004030 ORTHO05D004952 1.0e-124 450.7 355 80.0
BcaB07g32509 Brassica carinata HOM05D004030 ORTHO05D004952 1.1e-121 440.7 350 74.9
A09p37120 Brassica napus HOM05D004030 ORTHO05D004952 4.2e-118 428.7 354 71.2
BcaC05g26946 Brassica carinata HOM05D004030 ORTHO05D004952 1.5e-115 420.2 354 73.7
C05p27930 Brassica napus HOM05D004030 ORTHO05D004952 1.5e-115 420.2 354 73.7
BraA09t39228Z Brassica rapa HOM05D004030 ORTHO05D004952 2.0e-115 419.9 360 69.7
Aa31LG6G6290 Aethionema arabicum HOM05D004030 ORTHO05D004952 6.3e-114 414.8 356 75.0
BolC5t31519H Brassica oleracea HOM05D004030 ORTHO05D004952 7.7e-112 407.9 370 70.3
THA.LOC104820602 Tarenaya hassleriana HOM05D004030 ORTHO05D004952 2.0e-91 340.1 333 66.7
COL.COLO4_31267 Corchorus olitorius HOM05D004030 ORTHO05D004952 3.4e-75 286.2 420 48.1
MD10G1277900 Malus domestica HOM05D004030 ORTHO05D004952 5.7e-75 285.4 297 57.2
Thecc.06G168200 Theobroma cacao HOM05D004030 ORTHO05D004952 5.7e-75 285.4 307 56.4
MD05G1298600 Malus domestica HOM05D004030 ORTHO05D004952 2.2e-74 283.5 297 56.9
Ciclev10015509m.g Citrus clementina HOM05D004030 ORTHO05D004952 4.9e-74 282.3 409 49.4
Dinv16793 Davidia involucrata HOM05D004030 ORTHO05D004952 5.4e-73 278.9 220 69.5
CSS0010331 Camellia sinensis var. sinensis HOM05D004030 ORTHO05D004952 1.6e-72 277.3 282 58.2
CiPaw.09G071100 Carya illinoinensis HOM05D004030 ORTHO05D004952 3.5e-72 276.2 297 58.2
CANSAT80G0365 Cannabis sativa HOM05D004030 ORTHO05D004952 1.0e-71 274.6 312 52.6
Gohir.D10G036800 Gossypium hirsutum HOM05D004030 ORTHO05D004952 2.3e-71 273.5 305 55.1
TAR627G0229 Trochodendron aralioides HOM05D004030 ORTHO05D004952 1.5e-70 270.8 230 67.8
GSVIVG01021235001 Vitis vinifera HOM05D004030 ORTHO05D004952 1.5e-70 270.8 260 60.0
TWI39G0053 Tripterygium wilfordii HOM05D004030 ORTHO05D004952 1.9e-70 270.4 280 58.6
Phvul.009G089700 Phaseolus vulgaris HOM05D004030 ORTHO05D004952 2.5e-70 270.0 307 54.1
Glyma.04G063400 Glycine max HOM05D004030 ORTHO05D004952 3.3e-70 269.6 307 52.4
Duzib235G1256 Durio zibethinus HOM05D004030 ORTHO05D004952 7.3e-70 268.5 301 54.5
Gohir.A10G036100 Gossypium hirsutum HOM05D004030 ORTHO05D004952 7.3e-70 268.5 298 55.0
Eucgr.E02762 Eucalyptus grandis HOM05D004030 ORTHO05D004952 3.6e-69 266.2 309 52.4
Prupe.4G063800 Prunus persica HOM05D004030 ORTHO05D004952 1.1e-68 264.6 312 52.6
DCAR_020881 Daucus carota HOM05D004030 ORTHO05D004952 2.3e-68 263.5 278 57.2
Sed0004310 Sechium edule HOM05D004030 ORTHO05D004952 2.6e-67 260.0 314 54.1
MBI07_g09555_MAGBIO Magnolia biondii HOM05D004030 ORTHO05D004952 3.4e-67 259.6 231 62.8
Dinv40699 Davidia involucrata HOM05D004030 ORTHO05D004952 4.4e-67 259.2 254 61.4
VMungo1309G1983 Vigna mungo HOM05D004030 ORTHO05D004952 5.8e-67 258.8 326 50.6
ClCG03G007580 Citrullus lanatus HOM05D004030 ORTHO05D004952 9.8e-67 258.1 311 55.0
Medtr1g087790 Medicago truncatula HOM05D004030 ORTHO05D004952 9.8e-67 258.1 314 53.5
Cfa013812 Carpinus fangiana HOM05D004030 ORTHO05D004952 1.3e-66 257.7 307 52.4
Actinidia16784 Actinidia chinensis HOM05D004030 ORTHO05D004952 1.7e-66 257.3 300 53.0
ECA248G1387 Erigeron canadensis HOM05D004030 ORTHO05D004952 2.2e-66 256.9 281 56.2
MELO3C002663.2 Cucumis melo HOM05D004030 ORTHO05D004952 2.9e-66 256.5 310 54.5
Migut.M01023 Erythranthe guttata HOM05D004030 ORTHO05D004952 2.9e-66 256.5 232 63.4
PGR031G0618 Punica granatum HOM05D004030 ORTHO05D004952 6.4e-66 255.4 355 47.9
DCAR_005202 Daucus carota HOM05D004030 ORTHO05D004952 1.1e-65 254.6 286 55.2
EL10Ac8g20580 Beta vulgaris HOM05D004030 ORTHO05D004952 7.0e-65 251.9 267 55.4
Potri.011G068100 Populus trichocarpa HOM05D004030 ORTHO05D004952 7.0e-65 251.9 429 44.1
Gorai.011G038700 Gossypium raimondii HOM05D004030 ORTHO05D004952 9.2e-65 251.5 284 54.6
Ca_10308_v3 Cicer arietinum L. HOM05D004030 ORTHO05D004952 1.2e-64 251.1 310 51.9
PGSC0003DMG400028477 Solanum tuberosum HOM05D004030 ORTHO05D004952 1.6e-64 250.8 312 50.0
Peaxi162Scf00302g00311 Petunia axillaris HOM05D004030 ORTHO05D004952 2.0e-64 250.4 421 44.4
Hund21166 Selenicereus undatus HOM05D004030 ORTHO05D004952 2.0e-64 250.4 228 62.3
Solyc02g072510.3 Solanum lycopersicum HOM05D004030 ORTHO05D004952 4.6e-64 249.2 312 50.0
Sopen02g021480 Solanum pennellii HOM05D004030 ORTHO05D004952 6.0e-64 248.8 312 50.0
Manes.17G057500 Manihot esculenta HOM05D004030 ORTHO05D004952 1.0e-63 248.1 325 53.2
Cfa000628 Carpinus fangiana HOM05D004030 ORTHO05D004952 1.3e-63 247.7 309 51.8
Manes.16G041300 Manihot esculenta HOM05D004030 ORTHO05D004952 2.3e-63 246.9 286 54.9
CDE10G0195 Ceratophyllum demersum HOM05D004030 ORTHO05D004952 6.6e-63 245.4 282 51.4
Lalb_Chr18g0054631 Lupinus albus HOM05D004030 ORTHO05D004952 6.6e-63 245.4 303 51.8
arahy.Tifrunner.gnm1.ann1.M207AG Arachis hypogaea HOM05D004030 ORTHO05D004952 8.6e-63 245.0 309 50.5
arahy.Tifrunner.gnm1.ann1.6TT57W Arachis hypogaea HOM05D004030 ORTHO05D004952 1.9e-62 243.8 307 50.2
CsaV3_1G033240 Cucumis sativus L. HOM05D004030 ORTHO05D004952 1.9e-62 243.8 303 53.1
Rhsim13G0189000 Rhododendron simsii HOM05D004030 ORTHO05D004952 2.5e-62 243.4 308 51.0
CAN.G411.88 Capsicum annuum HOM05D004030 ORTHO05D004952 4.3e-62 242.7 315 50.2
Lj6g0006857 Lotus japonicus HOM05D004030 ORTHO05D004952 2.8e-61 240.0 312 51.0
Duzib160G0274 Durio zibethinus HOM05D004030 ORTHO05D004952 3.6e-61 239.6 291 52.2
HPP92_021480 Vanilla planifolia HOM05D004030 ORTHO05D004952 4.7e-61 239.2 237 57.0
Cc02_g15190 Coffea canephora HOM05D004030 ORTHO05D004952 8.1e-61 238.4 275 52.7
Potri.004G058700 Populus trichocarpa HOM05D004030 ORTHO05D004952 1.4e-60 237.7 230 61.3
Nn3g19533 Nelumbo nucifera HOM05D004030 ORTHO05D004952 1.8e-60 237.3 315 49.8
Sabra11G0049100 Salix brachista HOM05D004030 ORTHO05D004952 8.9e-60 235.0 263 54.8
SGA_v2.0_scaffold1G00064 Striga asiatica HOM05D004030 ORTHO05D004952 4.4e-59 232.6 336 47.9
Oeu043115.1 Olea europaea HOM05D004030 ORTHO05D004952 7.5e-59 231.9 249 55.4
AUR62027698 Chenopodium quinoa HOM05D004030 ORTHO05D004952 9.9e-59 231.5 217 59.9
Nn1g02598 Nelumbo nucifera HOM05D004030 ORTHO05D004952 9.9e-59 231.5 222 62.6
QL05p048142 Quercus lobata HOM05D004030 ORTHO05D004952 1.3e-58 231.1 286 52.8
Aqoxy1G02017 Aquilegia oxysepala HOM05D004030 ORTHO05D004952 2.2e-58 230.3 313 48.9
SalBow8G0896 Salvia bowleyana HOM05D004030 ORTHO05D004952 2.2e-58 230.3 266 54.1
Nitab4.5_0005171g0040 Nicotiana tabacum HOM05D004030 ORTHO05D004952 3.7e-58 229.6 285 50.2
arahy.Tifrunner.gnm1.ann1.HYDG6Q Arachis hypogaea HOM05D004030 ORTHO05D004952 1.1e-57 228.0 363 43.5
AUR62031227 Chenopodium quinoa HOM05D004030 ORTHO05D004952 1.9e-57 227.3 206 61.2
Haze_22485 Corylus avellana HOM05D004030 ORTHO05D004952 1.9e-57 227.3 285 50.9
ATR0824G134 Amborella trichopoda HOM05D004030 ORTHO05D004952 3.2e-57 226.5 215 59.1
Nitab4.5_0007465g0050 Nicotiana tabacum HOM05D004030 ORTHO05D004952 3.2e-57 226.5 322 47.5
SEGI_23147 Sequoiadendron giganteum HOM05D004030 ORTHO05D004952 2.1e-56 223.8 237 53.6
Ah.09g233420 Amaranthus hybridus HOM05D004030 ORTHO05D004952 2.7e-56 223.4 262 53.1
Haze_06204 Corylus avellana HOM05D004030 ORTHO05D004952 2.7e-56 223.4 294 50.0
Glyma.06G064600 Glycine max HOM05D004030 ORTHO05D004952 3.5e-56 223.0 244 53.3
RcHm_v2.0_Chr5g0011231 Rosa chinensis HOM05D004030 ORTHO05D004952 4.6e-56 222.6 230 57.8
PSO063G1415 Papaver somniferum HOM05D004030 ORTHO05D004952 1.7e-55 220.7 165 69.1
Os01g0759700 Oryza sativa ssp. japonica HOM05D004030 ORTHO05D004952 3.9e-55 219.5 244 53.7
HanXRQChr11g0350521 Helianthus annuus HOM05D004030 ORTHO05D004952 5.1e-55 219.2 403 44.9
Zm00001eb370530 Zea mays HOM05D004030 ORTHO05D004952 1.1e-54 218.0 243 53.5
PSO782G4674 Papaver somniferum HOM05D004030 ORTHO05D004952 5.6e-54 215.7 165 68.5
FAN25G0294 Fragaria x ananassa HOM05D004030 ORTHO05D004952 3.6e-53 213.0 287 48.8
FAN21G1198 Fragaria x ananassa HOM05D004030 ORTHO05D004952 4.7e-53 212.6 285 49.5
FvH4_3g07540 Fragaria vesca HOM05D004030 ORTHO05D004952 8.1e-53 211.8 293 48.5
FAN11G3556 Fragaria x ananassa HOM05D004030 ORTHO05D004952 8.1e-53 211.8 293 48.5
FAN16G1462 Fragaria x ananassa HOM05D004030 ORTHO05D004952 1.8e-52 210.7 261 51.7
Psat6g163160 Pisum sativum HOM05D004030 ORTHO05D004952 6.8e-52 208.8 243 51.9
FAN11G0126 Fragaria x ananassa HOM05D004030 ORTHO05D004952 8.9e-52 208.4 260 50.4
TWI63G1163 Tripterygium wilfordii HOM05D004030 ORTHO05D004952 1.2e-51 208.0 300 49.0
TPR.G40724 Trifolium pratense HOM05D004030 ORTHO05D004952 2.0e-51 207.2 194 61.3
BcaB03g13895 Brassica carinata HOM05D004030 ORTHO05D004952 7.6e-51 205.3 163 71.2
Atru.chr10.1642 Acer truncatum HOM05D004030 ORTHO05D004952 8.4e-50 201.8 306 46.4
Sc07g0007700 Simmondsia chinensis HOM05D004030 ORTHO05D004952 1.4e-49 201.1 205 54.1
arahy.Tifrunner.gnm1.ann1.JIP48Q Arachis hypogaea HOM05D004030 ORTHO05D004952 1.9e-49 200.7 306 44.8
arahy.Tifrunner.gnm1.ann1.G7P63M Arachis hypogaea HOM05D004030 ORTHO05D004952 4.6e-48 196.1 365 45.2
vmacro03922 Vaccinium macrocarpon HOM05D004030 ORTHO05D004952 3.9e-47 193.0 375 37.9
FvH4_3g37800 Fragaria vesca HOM05D004030 ORTHO05D004952 2.5e-46 190.3 246 48.4
HPP92_010042 Vanilla planifolia HOM05D004030 ORTHO05D004952 1.7e-42 177.6 162 58.6
COL.COLO4_06310 Corchorus olitorius HOM05D004030 ORTHO05D004952 6.4e-42 175.6 305 45.6
Sabra04G0038000 Salix brachista HOM05D004030 ORTHO05D004952 6.4e-42 175.6 201 54.2
Lsat_1_v5_gn_1_111240 Lactuca sativa HOM05D004030 ORTHO05D004952 3.5e-40 169.9 300 42.3
SHI28530 Sapria himalayana HOM05D004030 ORTHO05D004952 4.6e-40 169.5 190 52.6
AagrBONN_evm.TU.Sc2ySwM_344.2041 Anthoceros agrestis HOM05D004030 ORTHO05D004952 5.1e-39 166.0 264 43.2
SMO266G0004 Selaginella moellendorffii HOM05D004030 ORTHO05D004952 2.8e-37 160.2 333 38.1
AagrBONN_evm.TU.Sc2ySwM_362.2754 Anthoceros agrestis HOM05D004030 ORTHO05D004952 5.3e-36 156.0 332 38.0
Mapoly0022s0014 Marchantia polymorpha HOM05D004030 ORTHO05D004952 5.3e-36 156.0 300 37.7
Actinidia35586 Actinidia chinensis HOM05D004030 ORTHO05D004952 3.4e-35 153.3 230 46.5
Lj1A1189T62 Lonicera japonica HOM05D004030 ORTHO05D004952 9.9e-35 151.8 194 51.5
Cpa.g.sc7.87 Carica papaya HOM05D004030 ORTHO05D004952 1.7e-34 151.0 139 64.0
Lalb_Chr15g0086161 Lupinus albus HOM05D004030 ORTHO05D004952 2.7e-32 143.7 154 54.5
arahy.Tifrunner.gnm1.ann1.LWKQ47 Arachis hypogaea HOM05D004030 ORTHO05D004952 1.0e-31 141.7 163 49.7
SalBow5G1441 Salvia bowleyana HOM05D004030 ORTHO05D004952 3.0e-31 140.2 86 80.2
Peaxi162Scf00912g00019 Petunia axillaris HOM05D004030 ORTHO05D004952 5.1e-31 139.4 94 73.4
Ah.16g107150 Amaranthus hybridus HOM05D004030 ORTHO05D004952 1.6e-29 134.4 167 50.3
Lsat_1_v5_gn_6_74880 Lactuca sativa HOM05D004030 ORTHO05D004952 1.6e-29 134.4 281 36.7
CAN.G566.51 Capsicum annuum HOM05D004030 ORTHO05D004952 6.9e-28 129.0 220 40.5
Lj9A197T43 Lonicera japonica HOM05D004030 ORTHO05D004952 3.4e-27 126.7 157 54.8
Zm00001eb152490 Zea mays HOM05D004030 ORTHO05D004952 7.6e-27 125.6 164 45.1
Nitab4.5_0000271g0330 Nicotiana tabacum HOM05D004030 ORTHO05D004952 1.7e-26 124.4 203 45.3
CSS0023477 Camellia sinensis var. sinensis HOM05D004030 ORTHO05D004952 7.1e-25 119.0 70 75.7
CSS0003365 Camellia sinensis var. sinensis HOM05D004030 ORTHO05D004952 2.7e-24 117.1 70 74.3
SalBow5G5223 Salvia bowleyana HOM05D004030 ORTHO05D004952 2.7e-24 117.1 70 80.0
Ah.16g108320 Amaranthus hybridus HOM05D004030 ORTHO05D004952 7.9e-24 115.5 69 75.4
Nitab4.5_0004602g0020 Nicotiana tabacum HOM05D004030 ORTHO05D004952 1.0e-23 115.2 124 53.2
CDE10G0435 Ceratophyllum demersum HOM05D004030 ORTHO05D004952 1.8e-23 114.4 143 49.7
Aqoxy2G00428 Aquilegia oxysepala HOM05D004030 ORTHO05D004952 3.3e-22 110.2 132 49.2
CBR_g31948 Chara braunii HOM05D004030 ORTHO05D004952 8.2e-21 105.5 87 54.0
unitig_899.g15398 Utricularia gibba HOM05D004030 ORTHO05D004952 6.9e-20 102.4 398 29.6
Pp3c22_6900 Physcomitrium patens HOM05D004030 ORTHO05D004952 2.6e-19 100.5 106 48.1
SGA_v2.0_scaffold16G07708 Striga asiatica HOM05D004030 ORTHO05D004952 6.5e-18 95.9 194 38.1
Actinidia37045 Actinidia chinensis HOM05D004030 ORTHO05D004952 8.4e-18 95.5 231 35.1
Pp3c21_660 Physcomitrium patens HOM05D004030 ORTHO05D004952 4.1e-12 76.6 189 33.3
MCO08G144 Micromonas commoda HOM05D004030 ORTHO05D004952 2.9e-10 70.5 99 36.4
FAN23G1607 Fragaria x ananassa HOM05D000005 ORTHO05D000012 4.2e-09 66.6 83 48.2
A07p10840 Brassica napus HOM05D004030 ORTHO05D041112 7.9e-08 62.4 52 61.5
BraA07t28874Z Brassica rapa HOM05D004030 ORTHO05D041112 7.9e-08 62.4 52 61.5
Lalb_Chr15g0086171 Lupinus albus HOM05D004030 ORTHO05D004952 4.3e-06 56.6 93 46.2


User provided reference genes

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