Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR028360 Cardamine hirsuta HOM05D009058 ORTHO05D010761 2.8e-41 171.4 81 100.0
AT2G12465 Arabidopsis thaliana HOM05D008895 ORTHO05D010761 3.7e-25 117.9 85 65.9
AT5G42232 Arabidopsis thaliana HOM05D008895 ORTHO05D010761 4.0e-19 97.8 83 57.8
AL8G19420 Arabidopsis lyrata HOM05D008895 ORTHO05D010761 1.2e-18 96.3 84 57.1
AL8G19430 Arabidopsis lyrata HOM05D008895 ORTHO05D010761 1.2e-18 96.3 84 56.0
AL8G19452 Arabidopsis lyrata HOM05D008895 ORTHO05D010761 1.2e-18 96.3 84 57.1
AL8G19400 Arabidopsis lyrata HOM05D008895 ORTHO05D010761 9.8e-18 93.2 84 56.0
AL8G19410 Arabidopsis lyrata HOM05D008895 ORTHO05D010761 9.8e-18 93.2 84 56.0
Carub.0008s0699 Capsella rubella HOM05D008895 ORTHO05D010761 3.2e-16 88.2 80 55.0
AL2G17930 Arabidopsis lyrata HOM05D008895 ORTHO05D010761 1.2e-15 86.3 78 52.6
AL6G39510 Arabidopsis lyrata HOM05D008895 ORTHO05D031419 2.0e-15 85.5 80 55.0
A09p10320 Brassica napus HOM05D009058 ORTHO05D010761 3.0e-14 81.6 80 51.2
Carub.0003s3322 Capsella rubella HOM05D008895 ORTHO05D010761 3.0e-14 81.6 81 53.1
Carub.0003s2779 Capsella rubella HOM05D008895 ORTHO05D010761 1.1e-13 79.7 83 53.0
AT1G58055 Arabidopsis thaliana HOM05D008895 ORTHO05D010761 2.5e-13 78.6 78 47.4
BolC3t21014H Brassica oleracea HOM05D009058 ORTHO05D010761 3.3e-13 78.2 80 51.2
AT2G12475 Arabidopsis thaliana HOM05D008895 ORTHO05D010761 4.3e-13 77.8 83 53.0
C03p87140 Brassica napus HOM05D009058 ORTHO05D010761 5.6e-13 77.4 80 50.0
A08p15980 Brassica napus HOM05D008895 ORTHO05D012825 7.3e-13 77.0 83 47.0
BolC3t21016H Brassica oleracea HOM05D009058 ORTHO05D010761 7.3e-13 77.0 80 48.8
BraA08t33570Z Brassica rapa HOM05D008895 ORTHO05D012825 7.3e-13 77.0 83 47.0
C03p87120 Brassica napus HOM05D009058 ORTHO05D010761 9.5e-13 76.6 80 50.0
C03p87130 Brassica napus HOM05D009058 ORTHO05D010761 9.5e-13 76.6 80 50.0
BolC3t21015H Brassica oleracea HOM05D009058 ORTHO05D010761 9.5e-13 76.6 80 50.0
A08p17970 Brassica napus HOM05D009058 ORTHO05D010761 2.1e-12 75.5 80 48.8
A08p17990 Brassica napus HOM05D009058 ORTHO05D010761 2.1e-12 75.5 80 48.8
C03p87090 Brassica napus HOM05D009058 ORTHO05D010761 2.1e-12 75.5 80 48.8
BolC3t21011H Brassica oleracea HOM05D009058 ORTHO05D010761 2.1e-12 75.5 80 48.8
BraA08t33748Z Brassica rapa HOM05D009058 ORTHO05D010761 2.1e-12 75.5 80 48.8
BraA08t33749Z Brassica rapa HOM05D009058 ORTHO05D010761 2.1e-12 75.5 80 48.8
BraA08t33751Z Brassica rapa HOM05D009058 ORTHO05D010761 2.1e-12 75.5 80 48.8
BraA08t33752Z Brassica rapa HOM05D009058 ORTHO05D010761 2.1e-12 75.5 80 48.8
BolC3t21013H Brassica oleracea HOM05D009058 ORTHO05D010761 2.8e-12 75.1 80 48.8
BraA08t33750Z Brassica rapa HOM05D009058 ORTHO05D010761 2.8e-12 75.1 80 48.8
AT5G42235 Arabidopsis thaliana HOM05D008895 ORTHO05D010761 3.6e-12 74.7 83 45.8
C03p87110 Brassica napus HOM05D009058 ORTHO05D010761 3.6e-12 74.7 80 48.8
BolC3t20732H Brassica oleracea HOM05D008895 ORTHO05D012825 3.6e-12 74.7 83 45.8
A08p18020 Brassica napus HOM05D009058 ORTHO05D010761 8.1e-12 73.6 80 48.8
A08p17960 Brassica napus HOM05D009058 ORTHO05D010761 1.1e-11 73.2 80 47.5
A08p17980 Brassica napus HOM05D009058 ORTHO05D010761 1.1e-11 73.2 80 47.5
A08p18000 Brassica napus HOM05D009058 ORTHO05D010761 1.1e-11 73.2 80 47.5
BraA08t33753Z Brassica rapa HOM05D009058 ORTHO05D010761 1.1e-11 73.2 80 47.5
C03p87100 Brassica napus HOM05D009058 ORTHO05D010761 1.8e-11 72.4 80 47.5
AT5G27495 Arabidopsis thaliana HOM05D008895 ORTHO05D031419 4.0e-11 71.2 81 48.1
AT2G40995 Arabidopsis thaliana HOM05D009157 ORTHO05D011114 4.4e-10 67.8 82 46.3
Carub.0008s0698 Capsella rubella HOM05D008895 ORTHO05D010761 2.2e-09 65.5 81 39.5
A08p18010 Brassica napus HOM05D009058 ORTHO05D010761 6.4e-09 63.9 74 47.3
C03p55210 Brassica napus HOM05D008895 ORTHO05D012825 8.3e-09 63.5 81 45.7
BolC3t17794H Brassica oleracea HOM05D008895 ORTHO05D012825 8.3e-09 63.5 81 45.7
Carub.0007s3316 Capsella rubella HOM05D009997 ORTHO05D013470 1.4e-08 62.8 87 42.5
Thhalv10017522m.g Eutrema salsugineum HOM05D008895 ORTHO05D010761 3.2e-08 61.6 74 47.3
CARHR052530 Cardamine hirsuta HOM05D008895 ORTHO05D010761 5.4e-08 60.8 82 45.1
A03p44450 Brassica napus HOM05D008895 ORTHO05D012825 9.2e-08 60.1 81 44.4
C03p55220 Brassica napus HOM05D008895 ORTHO05D012825 9.2e-08 60.1 81 44.4
BolC3t17795H Brassica oleracea HOM05D008895 ORTHO05D012825 9.2e-08 60.1 81 44.4
BraA03t13578Z Brassica rapa HOM05D008895 ORTHO05D012825 9.2e-08 60.1 81 44.4
Carub.0003s2778 Capsella rubella HOM05D009997 ORTHO05D013532 9.2e-08 60.1 82 43.9
BolC7t42591H Brassica oleracea HOM05D009997 ORTHO05D011114 1.2e-07 59.7 85 43.5
AL872U10010 Arabidopsis lyrata HOM05D009157 ORTHO05D011114 1.6e-07 59.3 83 42.2
C03p55160 Brassica napus HOM05D008895 ORTHO05D012825 1.6e-07 59.3 81 42.0
C03p55190 Brassica napus HOM05D008895 ORTHO05D012825 1.6e-07 59.3 81 42.0
C03p55200 Brassica napus HOM05D008895 ORTHO05D012825 1.6e-07 59.3 81 42.0
BolC3t17788H Brassica oleracea HOM05D008895 ORTHO05D012825 1.6e-07 59.3 81 42.0
BolC3t17792H Brassica oleracea HOM05D008895 ORTHO05D012825 1.6e-07 59.3 81 42.0
BraA10t45181Z Brassica rapa HOM05D011549 ORTHO05D013532 1.6e-07 59.3 78 37.2
C03p55150 Brassica napus HOM05D008895 ORTHO05D012825 2.1e-07 58.9 81 43.2
BolC3t13839H Brassica oleracea HOM05D009997 ORTHO05D013470 2.1e-07 58.9 84 41.7
BolC3t17787H Brassica oleracea HOM05D008895 ORTHO05D012825 2.1e-07 58.9 81 43.2
Thhalv10015910m.g Eutrema salsugineum HOM05D009997 ORTHO05D011114 2.1e-07 58.9 80 42.5
C03p54740 Brassica napus HOM05D009058 ORTHO05D010761 2.7e-07 58.5 79 39.2
BraA07t29157Z Brassica rapa HOM05D009997 ORTHO05D011114 3.5e-07 58.2 85 43.5
AT1G15757 Arabidopsis thaliana HOM05D009997 ORTHO05D013470 6.0e-07 57.4 81 42.0
A03p11850 Brassica napus HOM05D009997 ORTHO05D013470 1.0e-06 56.6 84 41.7
A10p31360 Brassica napus HOM05D011549 ORTHO05D013532 1.0e-06 56.6 78 35.9
Carub.0001s1553 Capsella rubella HOM05D009997 ORTHO05D013470 1.0e-06 56.6 88 43.2
Carub.0006s2505 Capsella rubella HOM05D009058 ORTHO05D031419 1.0e-06 56.6 80 43.8
A10p31080 Brassica napus HOM05D011549 ORTHO05D013532 1.7e-06 55.8 78 38.5
C03p13920 Brassica napus HOM05D009997 ORTHO05D013470 1.7e-06 55.8 84 41.7
BraA03t10496Z Brassica rapa HOM05D009997 ORTHO05D013470 2.3e-06 55.5 84 40.5
C09p71660 Brassica napus HOM05D011549 ORTHO05D013532 5.1e-06 54.3 78 37.2
Sp1g14050 Schrenkiella parvula HOM05D009997 ORTHO05D013470 5.1e-06 54.3 88 39.8
C09p72010 Brassica napus HOM05D011549 ORTHO05D013532 6.6e-06 53.9 78 41.0
A06p14610 Brassica napus HOM05D011549 ORTHO05D013532 8.6e-06 53.5 78 39.7
BraA06t24588Z Brassica rapa HOM05D011549 ORTHO05D013532 8.6e-06 53.5 78 39.7
BraA06t24784Z Brassica rapa HOM05D009157 ORTHO05D011114 8.6e-06 53.5 81 39.5


User provided reference genes

Program Settings