Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR027960 Cardamine hirsuta HOM05D007344 ORTHO05D009010 1.9e-124 449.1 223 100.0
BraA09t39269Z Brassica rapa HOM05D007344 ORTHO05D009010 1.3e-75 287.0 227 67.0
A09p37590 Brassica napus HOM05D007344 ORTHO05D009010 2.8e-75 285.8 227 66.5
A07p11180 Brassica napus HOM05D007344 ORTHO05D009010 9.2e-74 280.8 226 64.6
BraA07t28908Z Brassica rapa HOM05D007344 ORTHO05D009010 9.2e-74 280.8 226 64.6
BcaC05g26866 Brassica carinata HOM05D007344 ORTHO05D009010 7.7e-73 277.7 227 65.2
BcaB07g32467 Brassica carinata HOM05D007344 ORTHO05D009010 1.3e-72 276.9 227 65.2
BolC5t31464H Brassica oleracea HOM05D007344 ORTHO05D009010 1.7e-72 276.6 227 64.8
C07p16850 Brassica napus HOM05D007344 ORTHO05D009010 1.1e-71 273.9 226 63.3
BcaC06g35373 Brassica carinata HOM05D007344 ORTHO05D009010 4.3e-71 271.9 226 62.8
BolC7t42191H Brassica oleracea HOM05D007344 ORTHO05D009010 2.8e-70 269.2 226 62.4
C05p27460 Brassica napus HOM05D007344 ORTHO05D009010 4.0e-69 265.4 237 61.2
Thhalv10009709m.g Eutrema salsugineum HOM05D007344 ORTHO05D009010 5.2e-53 211.8 165 69.1
Aa31LG6G10960 Aethionema arabicum HOM05D007344 ORTHO05D009010 1.7e-51 206.8 217 50.2
Sp1g24730 Schrenkiella parvula HOM05D007344 ORTHO05D009010 1.2e-49 200.7 220 52.3
Aa31sc276G90 Aethionema arabicum HOM05D007344 ORTHO05D009010 1.8e-45 186.8 218 50.9
Aa31LG6G10970 Aethionema arabicum HOM05D007344 ORTHO05D009010 1.2e-44 184.1 221 48.0
THA.LOC104813298 Tarenaya hassleriana HOM05D007344 ORTHO05D009010 2.4e-34 149.8 220 42.7
A07p38410 Brassica napus HOM05D007344 ORTHO05D009010 3.5e-25 119.4 236 39.0
BraA07t31402Z Brassica rapa HOM05D007344 ORTHO05D009010 3.5e-25 119.4 236 39.0
Carub.0002s1914 Capsella rubella HOM05D007344 ORTHO05D009010 4.6e-25 119.0 234 39.3
Sp5g27360 Schrenkiella parvula HOM05D007344 ORTHO05D009010 6.0e-25 118.6 238 38.2
Carub.0002s1910 Capsella rubella HOM05D007344 ORTHO05D009010 7.9e-25 118.2 237 37.6
BcaB03g14973 Brassica carinata HOM05D007344 ORTHO05D009010 1.3e-24 117.5 228 40.4
C06p46460 Brassica napus HOM05D007344 ORTHO05D009010 1.8e-24 117.1 228 38.6
BolC6t39698H Brassica oleracea HOM05D007344 ORTHO05D009010 1.8e-24 117.1 230 37.8
BolC6t39693H Brassica oleracea HOM05D007344 ORTHO05D009010 8.7e-24 114.8 228 38.6
AL2G33090 Arabidopsis lyrata HOM05D000535 ORTHO05D000427 1.1e-23 114.4 228 35.1
BcaB02g07012 Brassica carinata HOM05D007344 ORTHO05D009010 1.1e-23 114.4 228 38.6
BolC6t39697H Brassica oleracea HOM05D007344 ORTHO05D009010 1.9e-23 113.6 235 37.4
THA.LOC104813935 Tarenaya hassleriana HOM05D000535 ORTHO05D009010 1.9e-23 113.6 226 33.6
THA.LOC104814040 Tarenaya hassleriana HOM05D000535 ORTHO05D009010 1.9e-23 113.6 219 32.4
BcaC08g46676 Brassica carinata HOM05D007344 ORTHO05D009010 2.5e-23 113.2 235 37.4
C06p46520 Brassica napus HOM05D007344 ORTHO05D009010 2.5e-23 113.2 235 37.4
THA.LOC104814041 Tarenaya hassleriana HOM05D000535 ORTHO05D009010 2.5e-23 113.2 225 34.7
BcaB03g14972 Brassica carinata HOM05D007344 ORTHO05D009010 1.3e-22 110.9 240 39.2
CARHR066380 Cardamine hirsuta HOM05D000535 ORTHO05D000427 1.3e-22 110.9 228 33.3
BcaB03g14974 Brassica carinata HOM05D007344 ORTHO05D009010 1.6e-22 110.5 231 40.3
Carub.0002s1909 Capsella rubella HOM05D007344 ORTHO05D009010 1.6e-22 110.5 237 36.3
CARHR065170 Cardamine hirsuta HOM05D007344 ORTHO05D009010 2.8e-22 109.8 227 37.9
BcaB03g14970 Brassica carinata HOM05D007344 ORTHO05D009010 8.1e-22 108.2 195 37.4
BcaB07g32466 Brassica carinata HOM05D007344 ORTHO05D009010 3.1e-21 106.3 83 61.4
THA.LOC104812190 Tarenaya hassleriana HOM05D000535 ORTHO05D009010 3.1e-21 106.3 187 33.2
AT1G72290 Arabidopsis thaliana HOM05D007344 ORTHO05D009010 4.0e-21 105.9 218 36.2
BcaB05g24743 Brassica carinata HOM05D007344 ORTHO05D009010 6.9e-21 105.1 226 36.3
BcaB05g24740 Brassica carinata HOM05D007344 ORTHO05D009010 1.2e-20 104.4 226 36.7
BcaC08g46673 Brassica carinata HOM05D007344 ORTHO05D009010 2.6e-20 103.2 226 35.0
C06p46430 Brassica napus HOM05D007344 ORTHO05D009010 2.6e-20 103.2 226 35.0
Thhalv10019129m.g Eutrema salsugineum HOM05D000535 ORTHO05D000427 4.5e-20 102.4 226 35.0
A02p17920 Brassica napus HOM05D007344 ORTHO05D009010 5.8e-20 102.1 230 36.5
BraA02t06839Z Brassica rapa HOM05D007344 ORTHO05D009010 5.8e-20 102.1 230 36.5
BcaB03g14976 Brassica carinata HOM05D007344 ORTHO05D009010 1.3e-19 100.9 235 36.6
CARHR065180 Cardamine hirsuta HOM05D007344 ORTHO05D009010 2.2e-19 100.1 237 35.4
C02p29770 Brassica napus HOM05D007344 ORTHO05D009010 2.9e-19 99.8 225 36.0
BolC2t09025H Brassica oleracea HOM05D007344 ORTHO05D009010 2.9e-19 99.8 225 36.0
BraA07t31400Z Brassica rapa HOM05D007344 ORTHO05D009010 3.8e-19 99.4 234 34.2
BcaB03g15050 Brassica carinata HOM05D000535 ORTHO05D000427 6.4e-19 98.6 229 33.2
THA.LOC104812280 Tarenaya hassleriana HOM05D007344 ORTHO05D009010 8.4e-19 98.2 119 46.2
Sp5g28260 Schrenkiella parvula HOM05D000535 ORTHO05D009010 1.1e-18 97.8 227 30.8
AL2G31970 Arabidopsis lyrata HOM05D007344 ORTHO05D009010 4.2e-18 95.9 166 43.4
BolC6t39791H Brassica oleracea HOM05D000535 ORTHO05D009010 2.7e-17 93.2 166 35.5
Aa31LG4G3590 Aethionema arabicum HOM05D000535 ORTHO05D009010 3.5e-17 92.8 164 36.0
AT1G73325 Arabidopsis thaliana HOM05D000535 ORTHO05D000427 7.9e-17 91.7 164 35.4
BcaC08g46756 Brassica carinata HOM05D000535 ORTHO05D009010 7.9e-17 91.7 166 35.5
BcaC08g46677 Brassica carinata HOM05D007344 ORTHO05D009010 2.3e-16 90.1 206 35.0
BcaC08g46679 Brassica carinata HOM05D007344 ORTHO05D009010 3.9e-16 89.4 232 36.2
C06p46550 Brassica napus HOM05D007344 ORTHO05D009010 3.9e-16 89.4 232 36.2
C06p47530 Brassica napus HOM05D000535 ORTHO05D009010 3.9e-16 89.4 166 34.9
BolC6t39700H Brassica oleracea HOM05D007344 ORTHO05D009010 3.9e-16 89.4 232 36.2
BcaC03g15361 Brassica carinata HOM05D007344 ORTHO05D009010 6.7e-16 88.6 231 33.3
BolC6t39696H Brassica oleracea HOM05D007344 ORTHO05D009010 6.7e-16 88.6 178 36.5
A07p39300 Brassica napus HOM05D000535 ORTHO05D009010 8.7e-16 88.2 166 34.3
BraA07t31479Z Brassica rapa HOM05D000535 ORTHO05D009010 8.7e-16 88.2 166 34.3
BcaB05g24739 Brassica carinata HOM05D007344 ORTHO05D009010 4.3e-15 85.9 233 34.3
A02p17890 Brassica napus HOM05D007344 ORTHO05D009010 9.6e-15 84.7 220 35.0
BraA02t06838Z Brassica rapa HOM05D007344 ORTHO05D009010 9.6e-15 84.7 220 35.0
BcaB03g14975 Brassica carinata HOM05D007344 ORTHO05D009010 1.3e-14 84.3 230 34.3
BcaC03g15366 Brassica carinata HOM05D007344 ORTHO05D009010 6.2e-14 82.0 227 32.6
C02p29750 Brassica napus HOM05D007344 ORTHO05D009010 6.2e-14 82.0 227 32.6
C06p46590 Brassica napus HOM05D007344 ORTHO05D009010 1.8e-13 80.5 227 33.9
BolC6t39705H Brassica oleracea HOM05D007344 ORTHO05D009010 1.8e-13 80.5 227 33.9
BcaB05g24737 Brassica carinata HOM05D007344 ORTHO05D009010 2.4e-13 80.1 226 31.9
BcaC08g46678 Brassica carinata HOM05D007344 ORTHO05D009010 3.1e-13 79.7 212 33.5
C06p46540 Brassica napus HOM05D007344 ORTHO05D009010 3.1e-13 79.7 212 33.5
BolC6t39699H Brassica oleracea HOM05D007344 ORTHO05D009010 3.1e-13 79.7 212 33.5
A02p17860 Brassica napus HOM05D007344 ORTHO05D009010 9.0e-13 78.2 232 31.9
BraA02t06836Z Brassica rapa HOM05D007344 ORTHO05D009010 9.0e-13 78.2 232 31.9
A07p38440 Brassica napus HOM05D007344 ORTHO05D009010 1.2e-12 77.8 230 33.5
BolC2t09022H Brassica oleracea HOM05D007344 ORTHO05D009010 1.2e-12 77.8 205 33.7
BcaB05g24736 Brassica carinata HOM05D007344 ORTHO05D009010 3.4e-12 76.3 226 31.9
BraA07t31405Z Brassica rapa HOM05D007344 ORTHO05D009010 1.7e-11 73.9 230 32.6
C06p46530 Brassica napus HOM05D007344 ORTHO05D009010 2.2e-11 73.6 105 43.8
Cc04_g08380 Coffea canephora HOM05D000535 ORTHO05D000427 3.8e-11 72.8 160 35.0
Oeu020484.1 Olea europaea HOM05D000535 ORTHO05D000427 3.8e-11 72.8 167 31.7
BcaC03g15365 Brassica carinata HOM05D007344 ORTHO05D009010 8.4e-11 71.6 205 32.7
C02p29730 Brassica napus HOM05D007344 ORTHO05D009010 8.4e-11 71.6 205 32.7
Cc04_g08350 Coffea canephora HOM05D000535 ORTHO05D000427 1.4e-10 70.9 165 33.9
A07p38420 Brassica napus HOM05D007344 ORTHO05D009010 3.2e-10 69.7 195 31.8
BraA07t31403Z Brassica rapa HOM05D007344 ORTHO05D009010 3.2e-10 69.7 195 31.8
Nitab4.5_0000477g0200 Nicotiana tabacum HOM05D000535 ORTHO05D000427 3.2e-10 69.7 158 29.7
ClCG01G014760 Citrullus lanatus HOM05D000535 ORTHO05D000427 5.5e-10 68.9 168 31.0
AT1G73330 Arabidopsis thaliana HOM05D000535 ORTHO05D000427 7.1e-10 68.6 222 30.2
Peaxi162Scf00643g00538 Petunia axillaris HOM05D000535 ORTHO05D000427 7.1e-10 68.6 149 30.9
BcaC08g46682 Brassica carinata HOM05D007344 ORTHO05D009010 1.2e-09 67.8 163 35.0
Cc00_g34040 Coffea canephora HOM05D000535 ORTHO05D000427 1.6e-09 67.4 170 34.7
Peaxi162Scf00643g00055 Petunia axillaris HOM05D000535 ORTHO05D000427 1.6e-09 67.4 182 31.3
Potri.004G067900 Populus trichocarpa HOM05D000535 ORTHO05D000427 1.6e-09 67.4 202 29.2
CSS0021540 Camellia sinensis var. sinensis HOM05D000535 ORTHO05D000427 2.7e-09 66.6 171 33.9
Cc00_g28690 Coffea canephora HOM05D000535 ORTHO05D000427 2.7e-09 66.6 170 34.7
BraA07t31310Z Brassica rapa HOM05D008834 ORTHO05D011314 3.5e-09 66.2 143 32.9
Nitab4.5_0002771g0010 Nicotiana tabacum HOM05D000535 ORTHO05D000427 3.5e-09 66.2 158 28.5
Solyc06g072230.1 Solanum lycopersicum HOM05D000535 ORTHO05D000427 3.5e-09 66.2 184 29.3
Cc00_g23760 Coffea canephora HOM05D000535 ORTHO05D000427 4.6e-09 65.9 169 34.3
Glyma.16G212100 Glycine max HOM05D000535 ORTHO05D000427 4.6e-09 65.9 169 35.5
BolC2t09020H Brassica oleracea HOM05D007344 ORTHO05D009010 6.0e-09 65.5 190 32.6
Oeu029075.1 Olea europaea HOM05D000535 ORTHO05D000427 6.0e-09 65.5 167 29.9
CSS0003160 Camellia sinensis var. sinensis HOM05D000535 ORTHO05D000427 1.0e-08 64.7 175 34.3
CSS0030185 Camellia sinensis var. sinensis HOM05D000535 ORTHO05D000427 1.0e-08 64.7 172 34.3
Glyma.09G162700 Glycine max HOM05D000535 ORTHO05D000427 1.3e-08 64.3 160 34.4
Glyma.09G162800 Glycine max HOM05D000535 ORTHO05D000427 1.3e-08 64.3 160 34.4
THA.LOC104812195 Tarenaya hassleriana HOM05D000535 ORTHO05D000427 1.3e-08 64.3 158 30.4
Glyma.09G162500 Glycine max HOM05D000535 ORTHO05D000427 2.3e-08 63.5 160 34.4
Glyma.09G163000 Glycine max HOM05D000535 ORTHO05D000427 2.3e-08 63.5 167 33.5
Cc00_g28730 Coffea canephora HOM05D000535 ORTHO05D000427 3.0e-08 63.2 170 34.7
AL2G33100 Arabidopsis lyrata HOM05D000535 ORTHO05D000427 3.9e-08 62.8 220 29.1
CAN.G65.72 Capsicum annuum HOM05D000535 ORTHO05D000427 3.9e-08 62.8 188 27.7
DCAR_011421 Daucus carota HOM05D000535 ORTHO05D000427 3.9e-08 62.8 152 32.9
Sopen06g028550 Solanum pennellii HOM05D000535 ORTHO05D000427 5.1e-08 62.4 157 29.9
CAN.G765.33 Capsicum annuum HOM05D000535 ORTHO05D011982 6.7e-08 62.0 171 32.2
Rhsim08G0010200 Rhododendron simsii HOM05D000535 ORTHO05D000427 6.7e-08 62.0 162 34.0
PGSC0003DMG400027052 Solanum tuberosum HOM05D000535 ORTHO05D000427 6.7e-08 62.0 164 29.9
Ah.02g129700 Amaranthus hybridus HOM05D000535 ORTHO05D000427 8.7e-08 61.6 164 31.7
Hma1.2p1_1624F.1_g294263 Hydrangea macrophylla HOM05D000535 ORTHO05D000427 8.7e-08 61.6 171 30.4
Hma1.2p1_1624F.1_g294280 Hydrangea macrophylla HOM05D000535 ORTHO05D000427 8.7e-08 61.6 176 28.4
PSO017G1606 Papaver somniferum HOM05D000535 ORTHO05D000427 8.7e-08 61.6 166 30.7
Carub.0004s1488 Capsella rubella HOM05D000535 ORTHO05D000427 1.1e-07 61.2 221 29.9
CAN.G861.39 Capsicum annuum HOM05D000535 ORTHO05D000427 1.1e-07 61.2 144 30.6
Oeu029073.1 Olea europaea HOM05D000535 ORTHO05D000427 1.1e-07 61.2 175 28.0
Sed0020580 Sechium edule HOM05D000535 ORTHO05D000427 1.5e-07 60.8 167 30.5
Nitab4.5_0000339g0140 Nicotiana tabacum HOM05D000535 ORTHO05D000427 1.9e-07 60.5 158 29.7
Lsat_1_v5_gn_2_112040 Lactuca sativa HOM05D000535 ORTHO05D000427 2.5e-07 60.1 155 29.7
Nitab4.5_0000339g0150 Nicotiana tabacum HOM05D000535 ORTHO05D000427 2.5e-07 60.1 163 29.4
Oeu032705.1 Olea europaea HOM05D000535 ORTHO05D000427 2.5e-07 60.1 144 34.0
BolC6t39707H Brassica oleracea HOM05D007344 ORTHO05D009010 3.3e-07 59.7 213 30.5
Glyma.08G341400 Glycine max HOM05D000535 ORTHO05D011300 3.3e-07 59.7 157 31.2
Lj5P167T32 Lonicera japonica HOM05D000535 ORTHO05D000427 3.3e-07 59.7 136 35.3
Hma1.2p1_0060F.1_g032810 Hydrangea macrophylla HOM05D000535 ORTHO05D000427 4.3e-07 59.3 148 31.8
Hma1.2p1_0816F.1_g222920 Hydrangea macrophylla HOM05D000535 ORTHO05D000427 4.3e-07 59.3 150 31.3
AUR62028777 Chenopodium quinoa HOM05D000535 ORTHO05D000427 5.7e-07 58.9 161 29.2
Ciclev10016767m.g Citrus clementina HOM05D000535 ORTHO05D000427 5.7e-07 58.9 153 31.4
Actinidia26771 Actinidia chinensis HOM05D000535 ORTHO05D000427 7.4e-07 58.5 163 35.0
Glyma.16G212200 Glycine max HOM05D000535 ORTHO05D000427 7.4e-07 58.5 164 30.5
MBI18_g32029_MAGBIO Magnolia biondii HOM05D000535 ORTHO05D000427 7.4e-07 58.5 149 33.6
Medtr7g037410 Medicago truncatula HOM05D000535 ORTHO05D000427 7.4e-07 58.5 165 31.5
ECA238G3099 Erigeron canadensis HOM05D000535 ORTHO05D000427 9.6e-07 58.2 158 30.4
HanXRQChr05g0161361 Helianthus annuus HOM05D000535 ORTHO05D000427 9.6e-07 58.2 154 31.2
Medtr6g078280 Medicago truncatula HOM05D000535 ORTHO05D000427 9.6e-07 58.2 171 31.6
AUR62005785 Chenopodium quinoa HOM05D000535 ORTHO05D000427 1.3e-06 57.8 164 28.7
Lalb_Chr19g0133691 Lupinus albus HOM05D000535 ORTHO05D000427 1.3e-06 57.8 142 31.7
TWI32G1004 Tripterygium wilfordii HOM05D000535 ORTHO05D000427 1.3e-06 57.8 164 31.1
Lj2g0010766 Lotus japonicus HOM05D000535 ORTHO05D000427 1.6e-06 57.4 174 32.8
PSO782G5179 Papaver somniferum HOM05D000535 ORTHO05D000427 1.6e-06 57.4 169 28.4
Hma1.2p1_0135F.1_g061615 Hydrangea macrophylla HOM05D000535 ORTHO05D000427 2.1e-06 57.0 152 30.3
Hma1.2p1_0135F.1_g061660 Hydrangea macrophylla HOM05D000535 ORTHO05D000427 2.1e-06 57.0 152 30.3
Hma1.2p1_1624F.1_g294266 Hydrangea macrophylla HOM05D000535 ORTHO05D000427 2.1e-06 57.0 152 30.3
EL10Ac6g13199 Beta vulgaris HOM05D000535 ORTHO05D000427 2.8e-06 56.6 170 25.9
Medtr3g463590 Medicago truncatula HOM05D000535 ORTHO05D000427 2.8e-06 56.6 164 28.7
DCAR_011686 Daucus carota HOM05D000535 ORTHO05D000427 3.7e-06 56.2 156 27.6
ECA238G4632 Erigeron canadensis HOM05D000535 ORTHO05D000427 3.7e-06 56.2 158 32.3
Manes.01G126000 Manihot esculenta HOM05D000535 ORTHO05D000427 4.8e-06 55.8 205 27.3
PSO170G2432 Papaver somniferum HOM05D000535 ORTHO05D000427 4.8e-06 55.8 171 30.4
DCAR_011685 Daucus carota HOM05D000535 ORTHO05D000427 6.3e-06 55.5 158 31.6
Oeu018758.1 Olea europaea HOM05D000535 ORTHO05D000427 6.3e-06 55.5 158 33.5


User provided reference genes

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