Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR027740 Cardamine hirsuta HOM05D007285 ORTHO05D009224 3.3e-47 191.4 102 100.0
AT1G28250 Arabidopsis thaliana HOM05D007285 ORTHO05D009224 4.2e-42 174.5 98 92.9
AL1G41800 Arabidopsis lyrata HOM05D007285 ORTHO05D009224 7.2e-42 173.7 102 91.2
Aa31LG6G10160 Aethionema arabicum HOM05D007285 ORTHO05D009224 3.0e-40 168.3 100 87.0
Carub.0001s2669 Capsella rubella HOM05D007285 ORTHO05D009224 4.0e-40 167.9 99 88.9
BcaB07g32433 Brassica carinata HOM05D007285 ORTHO05D009224 6.7e-40 167.2 102 86.3
BcaC05g26830 Brassica carinata HOM05D007285 ORTHO05D009224 2.0e-39 165.6 102 86.3
BolC3t19748H Brassica oleracea HOM05D007285 ORTHO05D009224 2.6e-39 165.2 102 84.3
C05p27060 Brassica napus HOM05D007285 ORTHO05D009224 3.3e-39 164.9 102 85.3
Thhalv10009792m.g Eutrema salsugineum HOM05D007285 ORTHO05D009224 3.3e-39 164.9 109 81.7
A09p37820 Brassica napus HOM05D007285 ORTHO05D009224 4.4e-39 164.5 102 85.3
BraA09t39294Z Brassica rapa HOM05D007285 ORTHO05D009224 4.4e-39 164.5 102 85.3
BolC5t31425H Brassica oleracea HOM05D007285 ORTHO05D009224 4.5e-36 154.5 120 73.3
BcaC01g00030 Brassica carinata HOM05D007285 ORTHO05D009224 5.0e-35 151.0 128 67.2
THA.LOC104820545 Tarenaya hassleriana HOM05D007285 ORTHO05D009224 6.1e-33 144.1 103 73.8
COL.COLO4_31450 Corchorus olitorius HOM05D007285 ORTHO05D009224 2.4e-29 132.1 94 70.2
Ciclev10017252m.g Citrus clementina HOM05D007285 ORTHO05D009224 3.1e-29 131.7 98 67.3
Potri.004G045400 Populus trichocarpa HOM05D007285 ORTHO05D009224 3.1e-29 131.7 101 66.3
Prupe.4G049200 Prunus persica HOM05D007285 ORTHO05D009224 4.1e-29 131.3 103 67.0
Manes.17G046800 Manihot esculenta HOM05D007285 ORTHO05D009224 9.1e-29 130.2 100 64.0
TWI38G2229 Tripterygium wilfordii HOM05D007285 ORTHO05D009224 1.6e-28 129.4 103 65.0
Actinidia07587 Actinidia chinensis HOM05D007285 ORTHO05D009224 2.0e-28 129.0 96 67.7
Thecc.06G185100 Theobroma cacao HOM05D007285 ORTHO05D009224 5.9e-28 127.5 103 64.1
BcaB03g12118 Brassica carinata HOM05D007285 ORTHO05D009224 7.7e-28 127.1 81 80.2
CsaV3_1G012400 Cucumis sativus L. HOM05D007285 ORTHO05D009224 7.7e-28 127.1 93 66.7
MD00G1116000 Malus domestica HOM05D007285 ORTHO05D009224 1.3e-27 126.3 103 63.1
TWI63G1057 Tripterygium wilfordii HOM05D007285 ORTHO05D009224 1.3e-27 126.3 103 63.1
Ca_18554_v3 Cicer arietinum L. HOM05D007285 ORTHO05D009224 1.7e-27 125.9 94 66.0
Gohir.D06G133300 Gossypium hirsutum HOM05D007285 ORTHO05D009224 2.3e-27 125.6 103 63.1
MD10G1292600 Malus domestica HOM05D007285 ORTHO05D009224 2.3e-27 125.6 99 62.6
RcHm_v2.0_Chr5g0008721 Rosa chinensis HOM05D007285 ORTHO05D009224 2.3e-27 125.6 95 65.3
Sed0014393 Sechium edule HOM05D007285 ORTHO05D009224 2.9e-27 125.2 93 65.6
Gorai.010G155100 Gossypium raimondii HOM05D007285 ORTHO05D009224 3.8e-27 124.8 103 63.1
Atru.chr10.1858 Acer truncatum HOM05D007285 ORTHO05D009224 5.0e-27 124.4 99 60.6
Actinidia26129 Actinidia chinensis HOM05D007285 ORTHO05D009224 5.0e-27 124.4 103 65.0
CiPaw.09G061300 Carya illinoinensis HOM05D007285 ORTHO05D009224 6.5e-27 124.0 103 62.1
FvH4_3g08990 Fragaria vesca HOM05D007285 ORTHO05D009224 6.5e-27 124.0 95 63.2
FAN16G1611 Fragaria x ananassa HOM05D007285 ORTHO05D009224 6.5e-27 124.0 95 63.2
FAN21G1653 Fragaria x ananassa HOM05D007285 ORTHO05D009224 6.5e-27 124.0 95 63.2
FAN25G3510 Fragaria x ananassa HOM05D007285 ORTHO05D009224 6.5e-27 124.0 95 63.2
Gohir.A06G129300 Gossypium hirsutum HOM05D007285 ORTHO05D009224 6.5e-27 124.0 103 63.1
Hma1.2p1_0208F.1_g088230 Hydrangea macrophylla HOM05D007285 ORTHO05D009224 6.5e-27 124.0 95 65.3
Lalb_Chr15g0089751 Lupinus albus HOM05D007285 ORTHO05D009224 1.5e-26 122.9 100 63.0
Medtr4g088680 Medicago truncatula HOM05D007285 ORTHO05D009224 1.5e-26 122.9 99 62.6
ClCG03G008150 Citrullus lanatus HOM05D007285 ORTHO05D009224 1.9e-26 122.5 93 64.5
Sed0001788 Sechium edule HOM05D007285 ORTHO05D009224 3.3e-26 121.7 93 63.4
Dinv40575 Davidia involucrata HOM05D007285 ORTHO05D009224 4.2e-26 121.3 95 65.3
Rhsim02G0132100 Rhododendron simsii HOM05D007285 ORTHO05D009224 5.5e-26 120.9 103 63.1
SalBow8G5072 Salvia bowleyana HOM05D007285 ORTHO05D009224 7.2e-26 120.6 100 63.0
Nitab4.5_0005745g0020 Nicotiana tabacum HOM05D007285 ORTHO05D009224 9.5e-26 120.2 100 59.0
Lj4g0016922 Lotus japonicus HOM05D007285 ORTHO05D009224 2.8e-25 118.6 100 61.0
Psat7g114520 Pisum sativum HOM05D007285 ORTHO05D009224 2.8e-25 118.6 93 66.7
Phvul.002G229600 Phaseolus vulgaris HOM05D007285 ORTHO05D009224 3.6e-25 118.2 94 62.8
arahy.Tifrunner.gnm1.ann1.J7N80D Arachis hypogaea HOM05D007285 ORTHO05D009224 4.7e-25 117.9 93 63.4
arahy.Tifrunner.gnm1.ann1.VSLT1W Arachis hypogaea HOM05D007285 ORTHO05D009224 4.7e-25 117.9 93 63.4
Sopen02g022850 Solanum pennellii HOM05D007285 ORTHO05D009224 4.7e-25 117.9 100 60.0
Solyc02g078010.4 Solanum lycopersicum HOM05D007285 ORTHO05D009224 6.1e-25 117.5 100 59.0
CAN.G529.14 Capsicum annuum HOM05D007285 ORTHO05D009224 8.0e-25 117.1 99 60.6
Dinv17325 Davidia involucrata HOM05D007285 ORTHO05D009224 1.0e-24 116.7 95 65.3
TPR.G16329 Trifolium pratense HOM05D007285 ORTHO05D009224 1.4e-24 116.3 94 62.8
Migut.M01131 Erythranthe guttata HOM05D007285 ORTHO05D009224 2.3e-24 115.5 96 62.5
Peaxi162Scf00623g00519 Petunia axillaris HOM05D007285 ORTHO05D009224 2.3e-24 115.5 98 59.2
EL10Ac8g20395 Beta vulgaris HOM05D007285 ORTHO05D009224 3.0e-24 115.2 103 59.2
CSS0032734 Camellia sinensis var. sinensis HOM05D007285 ORTHO05D009224 3.0e-24 115.2 103 61.2
PGR042G2867 Punica granatum HOM05D007285 ORTHO05D009224 3.0e-24 115.2 95 60.0
VMungo0251G0987 Vigna mungo HOM05D007285 ORTHO05D009224 4.0e-24 114.8 94 61.7
Hund23773 Selenicereus undatus HOM05D007285 ORTHO05D009224 5.2e-24 114.4 102 59.8
AUR62017028 Chenopodium quinoa HOM05D007285 ORTHO05D009224 1.2e-23 113.2 103 59.2
Glyma.07G198400 Glycine max HOM05D007285 ORTHO05D009224 1.2e-23 113.2 95 61.1
CANSAT35G0751 Cannabis sativa HOM05D007285 ORTHO05D009224 1.5e-23 112.8 96 57.3
Eucgr.E03264 Eucalyptus grandis HOM05D007285 ORTHO05D009224 1.5e-23 112.8 97 58.8
C03p74970 Brassica napus HOM05D007285 ORTHO05D009224 2.0e-23 112.5 114 57.9
DCAR_008032 Daucus carota HOM05D007285 ORTHO05D009224 2.0e-23 112.5 97 59.8
HanXRQChr14g0435131 Helianthus annuus HOM05D007285 ORTHO05D009224 2.0e-23 112.5 96 61.5
Cc02_g13540 Coffea canephora HOM05D007285 ORTHO05D009224 3.4e-23 111.7 95 60.0
Lsat_1_v5_gn_4_52261 Lactuca sativa HOM05D007285 ORTHO05D009224 3.4e-23 111.7 100 60.0
MSTRG.7339 Avicennia marina HOM05D007285 ORTHO05D009224 4.4e-23 111.3 92 63.0
Glyma.13G178000 Glycine max HOM05D007285 ORTHO05D009224 4.4e-23 111.3 90 63.3
SGA_v2.0_scaffold100G29692 Striga asiatica HOM05D007285 ORTHO05D009224 4.4e-23 111.3 99 59.6
Ah.09g237440 Amaranthus hybridus HOM05D007285 ORTHO05D009224 5.7e-23 110.9 95 58.9
TAR626G1757 Trochodendron aralioides HOM05D007285 ORTHO05D009224 4.9e-22 107.8 96 57.3
Nn1g04136 Nelumbo nucifera HOM05D007285 ORTHO05D009224 6.3e-22 107.5 96 57.3
PSO541G0778 Papaver somniferum HOM05D007285 ORTHO05D009224 8.3e-22 107.1 98 55.1
unitig_27.g24965 Utricularia gibba HOM05D007285 ORTHO05D009224 8.3e-22 107.1 95 58.9
ATR0763G085 Amborella trichopoda HOM05D007285 ORTHO05D009224 4.1e-21 104.8 92 59.8
HPP92_007016 Vanilla planifolia HOM05D007285 ORTHO05D009224 5.9e-20 100.9 99 55.6
Sabra04G0028300 Salix brachista HOM05D007285 ORTHO05D009224 1.7e-19 99.4 153 42.5
Sc05g0007570 Simmondsia chinensis HOM05D007285 ORTHO05D009224 2.3e-19 99.0 95 54.7
CDE01G0551 Ceratophyllum demersum HOM05D007285 ORTHO05D009224 3.8e-19 98.2 93 51.6
QL05p041285 Quercus lobata HOM05D007285 ORTHO05D009224 3.8e-19 98.2 80 63.8
SEGI_38595 Sequoiadendron giganteum HOM05D007285 ORTHO05D009224 5.6e-18 94.4 96 47.9
Haze_06424 Corylus avellana HOM05D007285 ORTHO05D009224 7.3e-18 94.0 82 59.8
Zm00001eb305570 Zea mays HOM05D007285 ORTHO05D009224 1.6e-17 92.8 94 51.1
ECA234G4273 Erigeron canadensis HOM05D007285 ORTHO05D009224 1.8e-16 89.4 73 60.3
vmacro15913 Vaccinium macrocarpon HOM05D007285 ORTHO05D009224 2.3e-16 89.0 83 59.0
PGSC0003DMG401029703 Solanum tuberosum HOM05D007285 ORTHO05D009224 8.9e-16 87.0 79 57.0
SalBow8G3155 Salvia bowleyana HOM05D007285 ORTHO05D009224 1.3e-14 83.2 68 61.8
Pp3c8_510 Physcomitrium patens HOM05D007285 ORTHO05D009224 2.2e-14 82.4 101 50.5
MELO3C002614.2 Cucumis melo HOM05D007285 ORTHO05D009224 1.4e-13 79.7 60 63.3
DCAR_004065 Daucus carota HOM05D007285 ORTHO05D009224 1.8e-13 79.3 75 53.3
Mapoly0007s0165 Marchantia polymorpha HOM05D007285 ORTHO05D009224 1.8e-13 79.3 95 48.4
Os07g0299600 Oryza sativa ssp. japonica HOM05D007285 ORTHO05D009224 6.0e-12 74.3 75 52.0
CDE12G0235 Ceratophyllum demersum HOM05D007285 ORTHO05D009224 1.1e-08 63.5 93 40.9
A08p25730 Brassica napus HOM05D007285 ORTHO05D009224 6.4e-06 54.3 36 75.0
BraA08t34523Z Brassica rapa HOM05D007285 ORTHO05D009224 6.4e-06 54.3 36 75.0


User provided reference genes

Program Settings