Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CARHR027570 Cardamine hirsuta HOM05D005869 ORTHO05D007229 1.4e-159 566.2 281 100.0
Carub.0001s2653 Capsella rubella HOM05D005869 ORTHO05D007229 1.6e-139 499.6 282 86.9
AT1G28100 Arabidopsis thaliana HOM05D005869 ORTHO05D007229 3.5e-139 498.4 282 87.2
AL1G41620 Arabidopsis lyrata HOM05D005869 ORTHO05D007229 1.7e-138 496.1 282 86.9
BcaC06g35333 Brassica carinata HOM05D005869 ORTHO05D007229 3.9e-138 495.0 283 86.2
A07p11480 Brassica napus HOM05D005869 ORTHO05D007229 2.1e-136 489.2 292 83.9
Sp1g24290 Schrenkiella parvula HOM05D005869 ORTHO05D007229 3.1e-135 485.3 287 85.0
C07p17290 Brassica napus HOM05D005869 ORTHO05D007229 3.4e-134 481.9 283 84.8
BraA07t28937Z Brassica rapa HOM05D005869 ORTHO05D007229 4.5e-134 481.5 301 81.4
Thhalv10008411m.g Eutrema salsugineum HOM05D005869 ORTHO05D007229 8.4e-133 477.2 283 84.5
BolC7t42232H Brassica oleracea HOM05D005869 ORTHO05D007229 7.1e-132 474.2 292 82.2
BcaB07g32415 Brassica carinata HOM05D005869 ORTHO05D007229 7.6e-126 454.1 284 81.0
A09p37960 Brassica napus HOM05D005869 ORTHO05D007229 1.3e-120 436.8 284 78.5
C05p26800 Brassica napus HOM05D005869 ORTHO05D007229 2.4e-119 432.6 294 75.5
BraA09t39308Z Brassica rapa HOM05D005869 ORTHO05D007229 3.4e-118 428.7 301 74.4
BcaC05g26814 Brassica carinata HOM05D005869 ORTHO05D007229 1.9e-113 412.9 261 80.1
THA.LOC104820535 Tarenaya hassleriana HOM05D005869 ORTHO05D007229 7.4e-113 411.0 285 72.6
BolC5t31401H Brassica oleracea HOM05D005869 ORTHO05D007229 3.7e-112 408.7 270 77.4
Gohir.D02G175000 Gossypium hirsutum HOM05D005869 ORTHO05D007229 2.5e-105 386.0 288 67.7
Gorai.005G196600 Gossypium raimondii HOM05D005869 ORTHO05D007229 2.5e-105 386.0 287 67.2
Gohir.A03G152800 Gossypium hirsutum HOM05D005869 ORTHO05D007229 2.8e-104 382.5 287 66.2
Thecc.02G194400 Theobroma cacao HOM05D005869 ORTHO05D007229 1.4e-103 380.2 284 66.5
Duzib132G0160 Durio zibethinus HOM05D005869 ORTHO05D007229 4.1e-103 378.6 283 66.1
Ciclev10032244m.g Citrus clementina HOM05D005869 ORTHO05D007229 8.5e-101 370.9 290 64.5
Atru.chr11.2424 Acer truncatum HOM05D005869 ORTHO05D007229 3.2e-100 369.0 285 66.3
GSVIVG01004938001 Vitis vinifera HOM05D005869 ORTHO05D007229 5.5e-100 368.2 290 64.8
Aa31sc1106G20 Aethionema arabicum HOM05D005869 ORTHO05D007229 1.0e-98 364.0 335 57.6
Potri.003G163800 Populus trichocarpa HOM05D005869 ORTHO05D007229 1.4e-98 363.6 279 65.2
Prupe.1G217100 Prunus persica HOM05D005869 ORTHO05D007229 1.4e-98 363.6 283 63.6
Potri.001G066000 Populus trichocarpa HOM05D005869 ORTHO05D007229 8.8e-98 360.9 290 63.4
Hma1.2p1_1834F.1_g304595 Hydrangea macrophylla HOM05D005869 ORTHO05D007229 3.3e-97 359.0 285 62.5
Sabra01G0045900 Salix brachista HOM05D005869 ORTHO05D007229 4.4e-97 358.6 295 62.7
Duzib052G0289 Durio zibethinus HOM05D005869 ORTHO05D007229 7.4e-97 357.8 276 65.9
PSO478G4440 Papaver somniferum HOM05D005869 ORTHO05D007229 7.4e-97 357.8 283 60.8
Nn4g22166 Nelumbo nucifera HOM05D005869 ORTHO05D007229 9.7e-97 357.5 289 60.9
TWI36G0175 Tripterygium wilfordii HOM05D005869 ORTHO05D007229 2.4e-95 352.8 290 62.8
PSO017G3988 Papaver somniferum HOM05D005869 ORTHO05D007229 6.9e-95 351.3 291 60.5
CSS0039203 Camellia sinensis var. sinensis HOM05D005869 ORTHO05D007229 2.0e-94 349.7 297 59.9
TAR622G0237 Trochodendron aralioides HOM05D005869 ORTHO05D007229 3.4e-94 349.0 288 61.8
Actinidia09599 Actinidia chinensis HOM05D005869 ORTHO05D007229 7.7e-94 347.8 289 61.6
CiPaw.05G102600 Carya illinoinensis HOM05D005869 ORTHO05D007229 1.3e-93 347.1 313 57.5
FvH4_4g22830 Fragaria vesca HOM05D005869 ORTHO05D007229 1.7e-93 346.7 288 61.5
Sopen12g020650 Solanum pennellii HOM05D005869 ORTHO05D007229 2.2e-93 346.3 290 61.7
RcHm_v2.0_Chr4g0429061 Rosa chinensis HOM05D005869 ORTHO05D007229 2.9e-93 345.9 292 59.9
Manes.08G102300 Manihot esculenta HOM05D005869 ORTHO05D007229 5.0e-93 345.1 289 60.9
Solyc12g041880.2 Solanum lycopersicum HOM05D005869 ORTHO05D007229 6.5e-93 344.7 288 61.8
Rhsim12G0098100 Rhododendron simsii HOM05D005869 ORTHO05D007229 1.2e-91 340.5 306 58.5
PGSC0003DMG400014477 Solanum tuberosum HOM05D005869 ORTHO05D007229 2.7e-91 339.3 291 60.8
Cc11_g15130 Coffea canephora HOM05D005869 ORTHO05D007229 3.0e-90 335.9 269 62.1
MD13G1129300 Malus domestica HOM05D005869 ORTHO05D007229 3.9e-90 335.5 287 59.9
MELO3C017808.2 Cucumis melo HOM05D005869 ORTHO05D007229 1.1e-89 334.0 284 62.0
Aqoxy5G03171 Aquilegia oxysepala HOM05D005869 ORTHO05D007229 2.0e-89 333.2 291 57.4
Glyma.13G264200 Glycine max HOM05D005869 ORTHO05D007229 2.0e-89 333.2 290 57.2
vmacro16076 Vaccinium macrocarpon HOM05D005869 ORTHO05D007229 2.0e-89 333.2 319 55.2
Migut.K01077 Erythranthe guttata HOM05D005869 ORTHO05D007229 4.4e-89 332.0 287 58.2
Nitab4.5_0002899g0010 Nicotiana tabacum HOM05D005869 ORTHO05D007229 1.3e-88 330.5 290 59.0
BcaB03g13954 Brassica carinata HOM05D005869 ORTHO05D007229 1.7e-88 330.1 174 90.2
Sed0007329 Sechium edule HOM05D005869 ORTHO05D007229 8.2e-88 327.8 285 59.3
TPR.G35001 Trifolium pratense HOM05D005869 ORTHO05D007229 8.2e-88 327.8 281 60.5
ClCG07G011870 Citrullus lanatus HOM05D005869 ORTHO05D007229 1.8e-87 326.6 284 59.5
MD16G1129300 Malus domestica HOM05D005869 ORTHO05D007229 1.8e-87 326.6 284 59.5
CsaV3_4G002340 Cucumis sativus L. HOM05D005869 ORTHO05D007229 2.4e-87 326.2 282 59.9
Oeu044507.2 Olea europaea HOM05D005869 ORTHO05D007229 2.4e-87 326.2 293 56.7
Phvul.005G075700 Phaseolus vulgaris HOM05D005869 ORTHO05D007229 3.1e-87 325.9 290 56.9
arahy.Tifrunner.gnm1.ann1.WRPQ8T Arachis hypogaea HOM05D005869 ORTHO05D007229 4.1e-87 325.5 272 59.6
Lj3g0004461 Lotus japonicus HOM05D005869 ORTHO05D007229 2.6e-86 322.8 290 55.9
PGR102G3220 Punica granatum HOM05D005869 ORTHO05D007229 2.6e-86 322.8 295 59.0
arahy.Tifrunner.gnm1.ann1.3C70LE Arachis hypogaea HOM05D005869 ORTHO05D007229 3.5e-86 322.4 273 60.1
CDE05G0434 Ceratophyllum demersum HOM05D005869 ORTHO05D007229 1.0e-85 320.9 295 54.9
Eucgr.B03550 Eucalyptus grandis HOM05D005869 ORTHO05D007229 2.2e-85 319.7 269 62.8
Lalb_Chr25g0285611 Lupinus albus HOM05D005869 ORTHO05D007229 6.5e-85 318.2 288 56.9
Psat1g007680 Pisum sativum HOM05D005869 ORTHO05D007229 6.5e-85 318.2 290 57.2
Medtr2g072940 Medicago truncatula HOM05D005869 ORTHO05D007229 1.1e-84 317.4 288 57.3
EL10Ac6g13596 Beta vulgaris HOM05D005869 ORTHO05D007229 6.7e-82 308.1 291 54.3
Peaxi162Scf00128g01773 Petunia axillaris HOM05D005869 ORTHO05D007229 2.6e-81 306.2 267 61.8
ECA233G2015 Erigeron canadensis HOM05D005869 ORTHO05D007229 2.2e-80 303.1 281 55.9
Manes.09G187100 Manihot esculenta HOM05D005869 ORTHO05D007229 2.2e-80 303.1 217 66.8
ATR0829G022 Amborella trichopoda HOM05D005869 ORTHO05D007229 2.8e-80 302.8 294 54.1
HanXRQChr12g0363371 Helianthus annuus HOM05D005869 ORTHO05D007229 7.0e-79 298.1 281 55.2
MSTRG.8047 Avicennia marina HOM05D005869 ORTHO05D007229 2.0e-78 296.6 291 53.3
HanXRQChr08g0210441 Helianthus annuus HOM05D005869 ORTHO05D007229 7.7e-78 294.7 281 56.9
Zm00001eb044420 Zea mays HOM05D005869 ORTHO05D007229 2.9e-77 292.7 288 55.2
Ah.03g135600 Amaranthus hybridus HOM05D005869 ORTHO05D007229 5.0e-77 292.0 293 53.6
HPP92_000723 Vanilla planifolia HOM05D005869 ORTHO05D007229 3.6e-75 285.8 289 52.6
VMungo1080G1469 Vigna mungo HOM05D005869 ORTHO05D007229 1.3e-72 277.3 270 53.3
Sed0028093 Sechium edule HOM05D005869 ORTHO05D007229 1.7e-72 276.9 305 52.5
Cpa.g.sc498.3 Carica papaya HOM05D005869 ORTHO05D007229 4.8e-72 275.4 174 73.6
Lj6A836G36 Lonicera japonica HOM05D005869 ORTHO05D007229 4.1e-71 272.3 291 52.6
CANSAT01G1948 Cannabis sativa HOM05D005869 ORTHO05D007229 7.2e-68 261.5 238 56.3
Pp3c14_12070 Physcomitrium patens HOM05D005869 ORTHO05D007229 4.7e-67 258.8 269 51.7
QL03p049767 Quercus lobata HOM05D005869 ORTHO05D007229 5.7e-65 251.9 173 69.4
MBI11_g11870_MAGBIO Magnolia biondii HOM05D000422 ORTHO05D001248 1.1e-63 247.7 297 47.8
AagrBONN_evm.TU.Sc2ySwM_368.1764 Anthoceros agrestis HOM05D005869 ORTHO05D007229 7.8e-62 241.5 292 47.6
HanXRQChr08g0210391 Helianthus annuus HOM05D005869 ORTHO05D007229 5.0e-61 238.8 284 47.9
Sabra03G0119100 Salix brachista HOM05D005869 ORTHO05D007229 3.3e-60 236.1 149 75.2
Mapoly0153s0008 Marchantia polymorpha HOM05D005869 ORTHO05D007229 9.8e-57 224.6 285 43.2
Migut.K01074 Erythranthe guttata HOM05D005869 ORTHO05D007229 7.0e-55 218.4 160 64.4
Migut.K01075 Erythranthe guttata HOM05D005869 ORTHO05D007229 6.0e-54 215.3 283 42.0
Haze_12488 Corylus avellana HOM05D005869 ORTHO05D007229 1.0e-53 214.5 280 44.6
MSTRG.8048 Avicennia marina HOM05D005869 ORTHO05D007229 3.6e-51 206.1 277 42.2
Sc04g0000040 Simmondsia chinensis HOM05D005869 ORTHO05D007229 1.1e-50 204.5 118 80.5
Sc04g0000100 Simmondsia chinensis HOM05D005869 ORTHO05D007229 1.1e-50 204.5 118 80.5
SalBow7G3994 Salvia bowleyana HOM05D005869 ORTHO05D007229 1.7e-48 197.2 301 41.9
SalBow2G1918 Salvia bowleyana HOM05D005869 ORTHO05D007229 2.4e-47 193.4 319 40.4
BcaC05g26813 Brassica carinata HOM05D005869 ORTHO05D007229 4.1e-47 192.6 102 90.2
MCO09G131 Micromonas commoda HOM05D005869 ORTHO05D007229 7.0e-47 191.8 282 41.5
Cre03.g194450 Chlamydomonas reinhardtii HOM05D005869 ORTHO05D007229 4.6e-46 189.1 271 40.6
Oeu019435.1 Olea europaea HOM05D005869 ORTHO05D007229 6.0e-46 188.7 284 41.5
SGA_v2.0_scaffold201G41354 Striga asiatica HOM05D005869 ORTHO05D007229 1.9e-44 183.7 289 39.1
Os10g0499600 Oryza sativa ssp. japonica HOM05D005869 ORTHO05D007229 3.6e-43 179.5 103 80.6
PRCOL_00000815 Prasinoderma coloniale HOM05D005869 ORTHO05D007229 4.7e-43 179.1 280 38.9
AUR62005704 Chenopodium quinoa HOM05D005869 ORTHO05D007229 3.1e-42 176.4 269 42.4
Nitab4.5_0000608g0060 Nicotiana tabacum HOM05D005869 ORTHO05D007229 1.6e-38 164.1 183 49.7
FAN12G1770 Fragaria x ananassa HOM05D000001 ORTHO05D010470 2.1e-38 163.7 321 36.4
Migut.K01072 Erythranthe guttata HOM05D005869 ORTHO05D007229 3.9e-37 159.5 116 63.8
FAN07G2435 Fragaria x ananassa HOM05D000001 ORTHO05D010470 6.6e-37 158.7 321 35.8
SMO115G0111 Selaginella moellendorffii HOM05D005869 ORTHO05D007229 6.6e-37 158.7 95 80.0
FAN17G1058 Fragaria x ananassa HOM05D000001 ORTHO05D010470 1.1e-36 157.9 321 35.8
Hund16126 Selenicereus undatus HOM05D005869 ORTHO05D007229 1.5e-36 157.5 215 44.2
Dinv19137 Davidia involucrata HOM05D005869 ORTHO05D007229 4.3e-36 156.0 174 47.7
CBR_g3946 Chara braunii HOM05D005869 ORTHO05D007229 1.2e-35 154.5 285 35.4
Lsat_1_v5_gn_4_151180 Lactuca sativa HOM05D005869 ORTHO05D007229 3.1e-34 149.8 215 42.3
COL.COLO4_06415 Corchorus olitorius HOM05D005869 ORTHO05D007229 4.0e-34 149.4 150 52.7
Migut.O00624 Erythranthe guttata HOM05D005869 ORTHO05D007229 1.2e-33 147.9 204 40.7
Migut.K01076 Erythranthe guttata HOM05D005869 ORTHO05D007229 4.4e-25 119.4 102 57.8
unitig_26.g10430 Utricularia gibba HOM05D005869 ORTHO05D007229 2.9e-24 116.7 195 37.9
Ca_03922_v3 Cicer arietinum L. HOM05D005869 ORTHO05D007229 9.3e-23 111.7 151 41.7
QL03p049770 Quercus lobata HOM05D005869 ORTHO05D007229 1.2e-22 111.3 112 54.5
Sc04g0000090 Simmondsia chinensis HOM05D005869 ORTHO05D007229 8.7e-21 105.1 153 41.8
Actinidia34002 Actinidia chinensis HOM05D005869 ORTHO05D007229 1.1e-20 104.8 55 87.3
Sc04g0000050 Simmondsia chinensis HOM05D005869 ORTHO05D007229 3.3e-20 103.2 153 41.2
Hund16125 Selenicereus undatus HOM05D005869 ORTHO05D007229 4.5e-17 92.8 50 86.0
Glyma.12G234900 Glycine max HOM05D005869 ORTHO05D007229 8.7e-13 78.6 50 70.0
Pp3c14_11090 Physcomitrium patens HOM05D005869 ORTHO05D007229 1.3e-08 64.7 96 43.8
Migut.K01073 Erythranthe guttata HOM05D005869 ORTHO05D007229 6.4e-08 62.4 101 35.6
COL.COLO4_06414 Corchorus olitorius HOM05D005869 ORTHO05D007229 1.9e-07 60.8 71 46.5
arahy.Tifrunner.gnm1.ann1.6GV0UE Arachis hypogaea HOM05D001662 ORTHO05D005318 2.4e-07 60.5 63 52.4
SEGI_05009 Sequoiadendron giganteum HOM05D005869 ORTHO05D007229 2.7e-06 57.0 93 39.8


User provided reference genes

Program Settings